FvH4_1g10270

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
5590773 .. 5598440
7668 bp
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UTR
Exon/CDS
Intron
FvH4_1g10270.t8

Sequence Viewer

Length: 3720 bp
ATGAGAGGCGTGAAGCTGTTGCCGGAGGCGGTTCGGAGCTCGATTCGGTCTGGAGTGGTTCTGTATGACGTGGCTAGGGTTGTGGAGGAGCTCGTCTTCAATAGCTTGGACGCTGGAGCAAGAAAGGTGTCGGTTTTCGTGGGAATTGGGACTTGCTATGTGAAAGTAGTGGATGATGGATGTGGGATTACTCGTGATGGATTGGTGTTGCTGGGAGAAAGATATGCCACGTCGAAGTTTGGACAATGTTCTGAGGGGGATGGTGCGGGTGGGAGTTTTGGTTCCAGAGGGGAAGCATTGGCTTCGATTTCTGACGTGGCATTGCTTGAAGTTGTCACGAAAGCGTCGGGGAGGCCAAATGGGTATCGTAAAGTGATGAAGGGATCCAAATGTTTGTATCTTGGAGTAGATGACGATAGGAAGGATGTGGGCACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGGAGGAAGTGCATGCAATCCAGCCCAAAGAAGGTACTGGACACTGTCAAGAAATGTGTGCACAGGATCGCGCTGGTGCACTCAAAGGTTTCCTTTAAAGTTGTTGATATAGAAAGTGAGGATGAGCTTCTTCGTACCATTCCTTCTCCTTCTCCCTTGACATTATTGAGAACTGCTTTTGGGATCGAGGTCTCTGATGCACTTCATGAATTGAACATAAGTGATGGCAAATTAGAGCTTTCTGGATACCTATCTACTCCTTGCAATTGTCTTGCCATTAAGGCCTTCCAATATTTCTATATTAATTCACGGTTCATTTGTAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACAGCTGTTGTTGGATCCCACAACAGGAAGAGAAGTAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAAGTTGCCCCCACTCATTCTATGATTTGACCTTTGAACCGTCGAAGACATATGTTGAGTTCAAGGATTGGGTTCCTGTACTCAACTTTATTGAAAAGGCCATTCAAAGCTTCTGGAAGGAAAAGATATCCTATGTAGAACCTGCTTGTCATGGAGCTGATATACGAAGAGAAGGTCGAATGTGGGAGGAACATGACAATATTGTATCTGCAGATGAAAATTTGCTGGATGTAGATTTGTCAGAAATGTCACCAATAGGGAAAAAGAGAAGCAGGACACAAGATTTTGAGACATCTCCTGACATTATGAAGATTTTAAGTAAAGAGGACAGCGATGTATCTCAGAGGAGGCATGTCAGTGTTCCATTCGACTACTTGCATGGAAATATTGATGATGTCTTCAAAGATCGAGCTAGTGAGATTGATTTTGGTCATGATACTGACTATTCATTTAAACCACGGGATCAGAGTCTTGCTAAATGTATTCTCAGAACAACCCTGAAGAGGGAAAATGATAGTTGGATGTCTGAAATCAATGTTTCACCCGATGAAGATTATATGATGGATAGTGGATGCTCTGCTGCCAAAAGATCCTGCAATGTGGAAGATAATATCTTTAGTTTTAGCAAGGGTTCAGCAGTTATTGGAGTACCACATCATGATTCCAGTAGCGATGTGGATGTCACCTGTGATTTAAGACAACCTTTCCTCAAGAGTTGTTCCTCCCGAGGAAGGCTTCCATCTGAGAGGGATTTGTTTACAGAAAGTGGGATTAAATGTCATAATGATTACATTGGGAGTAAGAGAGTGTGGGAGGGCTCTTGCAACACTGCAGATATTTCAGAAATTGATGGCAGCTGTAAGAGAATGTGTAGTGGTTCTTATAAACGTGCAGAAGTTCCAGATATCCTGTCAATGACTTCATCACCAGGGAGGGTATCTAGTGCTCAGCCCTATCCCAGAGATAGATCAAAGTTTGATCCGTTTGCAGAGTTTGACCCTCTGTCAGGAGCTTATTTGAATTCAATACCATCCTGTAGGGAGCTTTTTAATGACTCAAGTTCAGACATTGGCTCCTACAATCAGACCTCAAAAACTGAATGGTACTCAGTGACGTCCAATCCCTTATCCCAGAGTGCCTATATGGCTTTTGAACCTTTCTCTAATGAAGATTCAGATGAAGGGTGTTACAGATATAAATATGATAAGAGGGATACTGAAAAGTATTTTGTTGATGCTGAAGAATTTGATTGCAGCTTTGGATCGGATATTGTATCAAAGATCACAGAACACTGTGCTGCAGATATAGACTGTGGACTTGATTATGATGTCAAAACTGGTTTTAGAAAATTCCTTCACCAAGACAAAATAGATAGAGAGATTTATACTGGTCACCGAGATAAATTAGCTGATGAGACAGATTGGTTACATTGGCATTCACGCAGCAAAGATAACATATGTATTGACATGCATAATAGACATGAGGAACAGTTAAAATATCAGGATAGTCTTAAGAATCGTATTTCAGTCAGAAGATCGTTGCGAAGCCACTCAGCTCCACCATTACCTAGAAGCAAGAGGAAGTACTTCACTTTAAACCATCCTGCGCCAACAGAAAGCAAACATGATGCACAACCCTTCCATGATTCAGCTACTTATCCAGAAGCTGGCACAATGAAGGATCTCTGTCAACCTCCTTATGGTAGTCATCAAAATTTGATGACAACTTCTGTGGAAGATTTATTGTTAGACACCAGATGTGAAGAATCTCAAGATATTAACGCTGGTGCAAGCAAGATGCAAAGATTGGAAATGTTTGAGCAATCTAAAAGGTCTGAGGTTCAAGCCATGGCTCCAAATAAAGAAATTATATCCAAGAATCAAGATTCCCTGAACTGCGGGACCAAATGGCGGAATTGTTGTCCCCAAAACACAAGCACAAGTATAATGCATGGTAGTCAAGCTGGAAATGATATACTTGACATATCTTCCGGATTCTTGCATCTTGCTGCTGATTCATTAGTTCCTGAATCTATCAATAAGAACTGTCTCAAGGATTGCAGAGTTCTTCAGCAGGTGGATAAGAAATATATTCCAGTCATGGCTGGCCAAACACTTGCTGTTATTGACCAGCATGCTGCAGATGAAAGGATCCGATTGGAGGAGCTGCGTCTGAAGGTCTTGTCCGGAGATGGAGAAGCAAAGACCATTACTTTTCTGGATATTGAACAAGAGCTGATGCTGCCGGAGATTGGTTACCAGTTACTTCATAACTATGCTAAACCAATAGAAGAGTGGGGTTGGCGCTGCAACATACATGCTCAAGATTCAGGGTCTTTCAAGAGGAATTTGAATATCCTTCACAGGCAGCCAACCGTCATCACACTTATTGCGGTTCCGTGCATCTTAGGTGTCAATCTATCTGATGTTGATCTTATGGAATTTCTTCAGCAGCTTTCTGACACAGATGGATCATCAACAATGCCACCGTCTGTTCTTCGGATCCTAAATTCTAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCCTTGCTACCTTCAGAGTGTTCCCTCATCGTTGATGAGCTGAAGCAGACCTCATTGTGTTTCCAATGTGCTCATGGTCGACCAACAACTGCCCCACTAGTAAATTTGGAAGCGTTGCACAAGCAAATAGCTAAGATTGCATCTTTGAATCAGAAGAGTGGTGCAGATCAAGGCTGGCATGGATTACATCGACATGAACTTAGTCTTGCACGTGCAGAACAACGTTTAAACTCGGCTAGAAGCTAG

Protein Analysis

1240

Amino Acids

138.98

Weight (kDa)

5.93

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 22 - 120 1.3e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair PF01119 215 - 347 1e-10 DNA mismatch repair protein, C-terminal domain
MutL_C PF08676 993 - 1154 4e-09 MutL C terminal dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1812
AarI CACCTGC 1 cut(s) 2992
AatII GACGTC 1 cut(s) 2045
Acc36I ACCTGC 2 cut(s) 1078, 2992
AccB7I CCANNNNNTGG 1 cut(s) 2594
AccI GTMKAC 2 cut(s) 895, 3553
AccII CGCG 1 cut(s) 545
AccIII TCCGGA 2 cut(s) 2918, 3113
AciI CCGC 5 cut(s) 29, 266, 2826, 2839, 3320
AclI AACGTT 1 cut(s) 3697
AcoI YGGCCR 1 cut(s) 3034
AcuI CTGAAG 7 cut(s) 1448, 2187, 2981, 3122, 3359, 3471, 3536
AcvI CACGTG 1 cut(s) 3686
AcyI GRCGYC 1 cut(s) 2042
AfaI GTAC 6 cut(s) 510, 610, 1008, 1578, 2033, 2513
AflII CTTAAG 1 cut(s) 2438
AhdI GACNNNNNGTC 1 cut(s) 1930
AhlI ACTAGT 1 cut(s) 3571
AjiI CACGTC 3 cut(s) 70, 231, 316
AjnI CCWGG 2 cut(s) 853, 1855
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
Alw21I GWGCWC 6 cut(s) 41, 93, 537, 555, 1876, 3547
Alw26I GTCTC 4 cut(s) 670, 1211, 2336, 2981
Alw44I GTGCAC 2 cut(s) 533, 551
AlwNI CAGNNNCTG 1 cut(s) 2594
Ama87I CYCGRG 1 cut(s) 1653
Aor13HI TCCGGA 2 cut(s) 2918, 3113
AoxI GGCC 5 cut(s) 353, 756, 828, 1026, 3034
ApaLI GTGCAC 2 cut(s) 533, 551
ArsI GACNNNNNNTTYG 2 cut(s) 1087, 1119
AseI ATTAAT 1 cut(s) 777
Asp700I GAANNNNTTC 2 cut(s) 2513, 3372
AspLEI GCGC 3 cut(s) 547, 2536, 3234
AspS9I GGNCC 3 cut(s) 800, 850, 2829
AsuHPI GGTGA 6 cut(s) 1170, 1461, 1603, 1845, 2276, 2312
AsuII TTCGAA 1 cut(s) 840
AvaI CYCGRG 1 cut(s) 1653
AvaII GGWCC 3 cut(s) 800, 850, 2829
BaeGI GKGCMC 3 cut(s) 434, 537, 555
BalI TGGCCA 1 cut(s) 3036
BamHI GGATCC 4 cut(s) 383, 872, 3078, 3429
BanII GRGCYC 3 cut(s) 41, 93, 1748
BarI GAAGNNNNNNTAC 2 cut(s) 601, 633
BauI CACGAG 1 cut(s) 192
BbrPI CACGTG 1 cut(s) 3686
BbsI GAAGAC 3 cut(s) 88, 980, 1318
Bbv12I GWGCWC 6 cut(s) 41, 93, 537, 555, 1876, 3547
BcgI CGANNNNNNTGC 2 cut(s) 285, 319
BciT130I CCWGG 2 cut(s) 855, 1857
BciVI GTATCC 2 cut(s) 713, 2134
BcoDI GTCTC 4 cut(s) 670, 1211, 2336, 2981
BcuI ACTAGT 1 cut(s) 3571
BfaI CTAG 8 cut(s) 75, 834, 1341, 1869, 2496, 3572, 3711, 3718
BfmI CTRYAG 5 cut(s) 1137, 1758, 1963, 2226, 3066
BfoI RGCGCY 1 cut(s) 3235
BfrI CTTAAG 1 cut(s) 2438
BfuAI ACCTGC 2 cut(s) 1078, 2992
BfuI GTATCC 2 cut(s) 713, 2134
BglI GCCNNNNNGGC 2 cut(s) 755, 2072
BlpI GCTNAGC 1 cut(s) 1875
BmcAI AGTACT 1 cut(s) 2513
Bme1390I CCNGG 2 cut(s) 855, 1857
Bme18I GGWCC 3 cut(s) 800, 850, 2829
BmeRI GACNNNNNGTC 1 cut(s) 1930
BmeT110I CYCGRG 1 cut(s) 1653
BmgBI CACGTC 3 cut(s) 70, 231, 316
BmgT120I GGNCC 3 cut(s) 800, 850, 2829
BmrFI CCNGG 2 cut(s) 855, 1857
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 9 cut(s) 661, 1490, 2152, 2545, 2715, 2938, 3156, 3339, 3623
BmuI ACTGGG 1 cut(s) 905
BpiI GAAGAC 3 cut(s) 88, 980, 1318
BpmI CTGGAG 2 cut(s) 72, 135
Bpu1102I GCTNAGC 1 cut(s) 1875
Bpu14I TTCGAA 1 cut(s) 840
BpuEI CTTGAG 6 cut(s) 885, 1622, 1969, 2682, 2963, 3234
BsaAI YACGTR 1 cut(s) 3686
BsaBI GATNNNNATC 2 cut(s) 724, 3357
BsaHI GRCGYC 1 cut(s) 2042
BsaI GGTCTC 1 cut(s) 670
BsaJI CCNNGG 6 cut(s) 853, 854, 1385, 1654, 1856, 2775
BsaWI WCCGGW 2 cut(s) 2918, 3113
BsaXI ACNNNNNCTCC 4 cut(s) 265, 295, 1985, 2015
Bse1I ACTGG 8 cut(s) 470, 516, 911, 1593, 2269, 2320, 3023, 3187
Bse3DI GCAATG 2 cut(s) 320, 1531
Bse8I GATNNNNATC 2 cut(s) 724, 3357
BseAI TCCGGA 2 cut(s) 2918, 3113
BseBI CCWGG 2 cut(s) 855, 1857
BseDI CCNNGG 6 cut(s) 853, 854, 1385, 1654, 1856, 2775
BseJI GATNNNNATC 2 cut(s) 724, 3357
BseMI GCAATG 2 cut(s) 320, 1531
BseMII CTCAG 8 cut(s) 243, 1283, 1429, 1662, 1889, 2049, 2493, 2754
BseNI ACTGG 8 cut(s) 470, 516, 911, 1593, 2269, 2320, 3023, 3187
BseRI GAGGAG 3 cut(s) 101, 1288, 3104
BseSI GKGCMC 3 cut(s) 434, 537, 555
BseYI CCCAGC 2 cut(s) 211, 846
BsgI GTGCAG 3 cut(s) 1839, 3657, 3708
Bsh1236I CGCG 1 cut(s) 545
BshFI GGCC 5 cut(s) 355, 758, 830, 1028, 3036
BsiHKAI GWGCWC 6 cut(s) 41, 93, 537, 555, 1876, 3547
BsiHKCI CYCGRG 1 cut(s) 1653
BsiSI CCGG 4 cut(s) 23, 2919, 3114, 3173
BslFI GGGAC 5 cut(s) 163, 863, 871, 2835, 2842
BsmAI GTCTC 4 cut(s) 670, 1211, 2336, 2981
BsmFI GGGAC 5 cut(s) 163, 863, 871, 2835, 2842
BsmI GAATGC 3 cut(s) 848, 905, 2362
BsnI GGCC 5 cut(s) 355, 758, 830, 1028, 3036
Bso31I GGTCTC 1 cut(s) 670
BsoBI CYCGRG 1 cut(s) 1653
Bsp119I TTCGAA 1 cut(s) 840
Bsp1286I GDGCHC 8 cut(s) 41, 93, 434, 537, 555, 1748, 1876, 3547
Bsp13I TCCGGA 2 cut(s) 2918, 3113
Bsp1720I GCTNAGC 1 cut(s) 1875
Bsp19I CCATGG 1 cut(s) 2775
BspACI CCGC 5 cut(s) 29, 266, 2826, 2839, 3320
BspANI GGCC 5 cut(s) 355, 758, 830, 1028, 3036
BspCNI CTCAG 8 cut(s) 244, 1282, 1428, 1663, 1888, 2048, 2492, 2755
BspEI TCCGGA 2 cut(s) 2918, 3113
BspFNI CGCG 1 cut(s) 545
BspHI TCATGA 3 cut(s) 679, 1360, 1585
BspMAI CTGCAG 4 cut(s) 1141, 1762, 2230, 3070
BspMI ACCTGC 2 cut(s) 1078, 2992
BspT104I TTCGAA 1 cut(s) 840
BspTI CTTAAG 1 cut(s) 2438
BspTNI GGTCTC 1 cut(s) 670
BsrDI GCAATG 2 cut(s) 320, 1531
BsrI ACTGG 8 cut(s) 470, 516, 911, 1593, 2269, 2320, 3023, 3187
BssECI CCNNGG 6 cut(s) 853, 854, 1385, 1654, 1856, 2775
BssNI GRCGYC 1 cut(s) 2042
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 2775
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 855, 1857
Bst6I CTCTTC 5 cut(s) 881, 1090, 1424, 3213, 3623
BstACI GRCGYC 1 cut(s) 2042
BstAFI CTTAAG 1 cut(s) 2438
BstBAI YACGTR 1 cut(s) 3686
BstBI TTCGAA 1 cut(s) 840
BstC8I GCNNGC 7 cut(s) 488, 2596, 2719, 3034, 3063, 3448, 3650
BstDSI CCRYGG 2 cut(s) 1385, 2775
BstEII GGTNACC 2 cut(s) 2318, 3182
BstENI CCTNNNNNAGG 1 cut(s) 1932
BstFNI CGCG 1 cut(s) 545
BstH2I RGCGCY 1 cut(s) 3235
BstHHI GCGC 3 cut(s) 547, 2536, 3234
BstMAI GTCTC 4 cut(s) 670, 1211, 2336, 2981
BstMWI GCNNNNNNNGC 5 cut(s) 755, 843, 2072, 3169, 3611
BstNI CCWGG 2 cut(s) 855, 1857
BstNSI RCATGY 6 cut(s) 490, 1283, 2398, 3065, 3248, 3450
BstPI GGTNACC 2 cut(s) 2318, 3182
BstSCI CCNGG 2 cut(s) 853, 1855
BstSFI CTRYAG 5 cut(s) 1137, 1758, 1963, 2226, 3066
BstSLI GKGCMC 3 cut(s) 434, 537, 555
BstUI CGCG 1 cut(s) 545
BstV2I GAAGAC 3 cut(s) 88, 980, 1318
BstX2I RGATCY 6 cut(s) 383, 872, 1517, 2608, 3078, 3429
BstYI RGATCY 6 cut(s) 383, 872, 1517, 2608, 3078, 3429
BsuI GTATCC 2 cut(s) 713, 2134
BsuRI GGCC 5 cut(s) 355, 758, 830, 1028, 3036
BtgI CCRYGG 2 cut(s) 1385, 2775
BtgZI GCGATG 2 cut(s) 1275, 1614
BtrI CACGTC 3 cut(s) 70, 231, 316
BtsI GCAGTG 1 cut(s) 1755
BtsIMutI CAGTG 5 cut(s) 516, 1291, 1755, 2043, 2218
BveI ACCTGC 2 cut(s) 1078, 2992
Cac8I GCNNGC 7 cut(s) 488, 2596, 2719, 3034, 3063, 3448, 3650
CaiI CAGNNNCTG 1 cut(s) 2594
CciI TCATGA 3 cut(s) 679, 1360, 1585
CfoI GCGC 3 cut(s) 547, 2536, 3234
Cfr13I GGNCC 3 cut(s) 800, 850, 2829
CseI GACGC 3 cut(s) 119, 333, 3086
Csp6I GTAC 6 cut(s) 509, 609, 1007, 1577, 2032, 2512
CspCI CAANNNNNGTGG 2 cut(s) 2640, 2675
CviQI GTAC 6 cut(s) 509, 609, 1007, 1577, 2032, 2512
DraI TTTAAA 4 cut(s) 571, 1381, 2523, 3702
DriI GACNNNNNGTC 1 cut(s) 1930
EaeI YGGCCR 1 cut(s) 3034
Eam1104I CTCTTC 5 cut(s) 881, 1090, 1424, 3213, 3623
Eam1105I GACNNNNNGTC 1 cut(s) 1930
EarI CTCTTC 5 cut(s) 881, 1090, 1424, 3213, 3623
EciI GGCGGA 1 cut(s) 2854
Ecl136II GAGCTC 2 cut(s) 39, 91
Eco130I CCWWGG 1 cut(s) 2775
Eco147I AGGCCT 1 cut(s) 758
Eco24I GRGCYC 3 cut(s) 41, 93, 1748
Eco31I GGTCTC 1 cut(s) 670
Eco32I GATATC 2 cut(s) 1056, 1834
Eco47I GGWCC 3 cut(s) 800, 850, 2829
Eco53kI GAGCTC 2 cut(s) 39, 91
Eco57I CTGAAG 7 cut(s) 1448, 2187, 2981, 3122, 3359, 3471, 3536
Eco72I CACGTG 1 cut(s) 3686
Eco88I CYCGRG 1 cut(s) 1653
Eco91I GGTNACC 2 cut(s) 2318, 3182
EcoICRI GAGCTC 2 cut(s) 39, 91
EcoNI CCTNNNNNAGG 1 cut(s) 1932
EcoO109I RGGNCCY 1 cut(s) 850
EcoO65I GGTNACC 2 cut(s) 2318, 3182
EcoRI GAATTC 1 cut(s) 1948
EcoRII CCWGG 2 cut(s) 853, 1855
EcoRV GATATC 2 cut(s) 1056, 1834
EcoT14I CCWWGG 1 cut(s) 2775
EcoT22I ATGCAT 2 cut(s) 2400, 2880
EcoT38I GRGCYC 3 cut(s) 41, 93, 1748
ErhI CCWWGG 1 cut(s) 2775
FalI AAGNNNNNCTT 4 cut(s) 551, 583, 1615, 1647
FaqI GGGAC 5 cut(s) 163, 863, 871, 2835, 2842
FauI CCCGC 2 cut(s) 259, 2819
FauNDI CATATG 2 cut(s) 979, 2384
FblI GTMKAC 2 cut(s) 895, 3553
FriOI GRGCYC 3 cut(s) 41, 93, 1748
FspBI CTAG 8 cut(s) 75, 834, 1341, 1869, 2496, 3572, 3711, 3718
GlaI GCGC 3 cut(s) 546, 2535, 3233
GsaI CCCAGC 2 cut(s) 215, 850
GsuI CTGGAG 2 cut(s) 72, 135
HaeII RGCGCY 1 cut(s) 3235
HaeIII GGCC 5 cut(s) 355, 758, 830, 1028, 3036
HapII CCGG 4 cut(s) 23, 2919, 3114, 3173
HgaI GACGC 3 cut(s) 119, 333, 3086
HhaI GCGC 3 cut(s) 547, 2536, 3234
Hin1I GRCGYC 1 cut(s) 2042
Hin6I GCGC 3 cut(s) 545, 2534, 3232
HinP1I GCGC 3 cut(s) 545, 2534, 3232
HincII GTYRAC 2 cut(s) 2618, 3554
HindII GTYRAC 2 cut(s) 2618, 3554
HindIII AAGCTT 1 cut(s) 1036
HpaII CCGG 4 cut(s) 23, 2919, 3114, 3173
HphI GGTGA 6 cut(s) 1170, 1461, 1603, 1845, 2276, 2312
Hpy166II GTNNAC 7 cut(s) 535, 553, 896, 1686, 2243, 2618, 3554
Hpy8I GTNNAC 7 cut(s) 535, 553, 896, 1686, 2243, 2618, 3554
Hpy99I CGWCG 3 cut(s) 235, 349, 973
HpyCH4IV ACGT 7 cut(s) 69, 230, 315, 1816, 2042, 3685, 3697
HpyF10VI GCNNNNNNNGC 5 cut(s) 755, 843, 2072, 3169, 3611
HpySE526I ACGT 7 cut(s) 69, 230, 315, 1816, 2042, 3685, 3697
Hsp92I GRCGYC 1 cut(s) 2042
HspAI GCGC 3 cut(s) 545, 2534, 3232
KflI GGGWCCC 1 cut(s) 850
Kpn2I TCCGGA 2 cut(s) 2918, 3113
LweI GCATC 9 cut(s) 661, 1490, 2152, 2545, 2715, 2938, 3156, 3339, 3623
MaeI CTAG 8 cut(s) 75, 834, 1341, 1869, 2496, 3572, 3711, 3718
MaeII ACGT 7 cut(s) 69, 230, 315, 1816, 2042, 3685, 3697
MaeIII GTNAC 9 cut(s) 334, 1176, 1609, 2038, 2114, 2318, 2352, 3182, 3189
MfeI CAATTG 2 cut(s) 739, 824
MflI RGATCY 6 cut(s) 383, 872, 1517, 2608, 3078, 3429
MhlI GDGCHC 8 cut(s) 41, 93, 434, 537, 555, 1748, 1876, 3547
MlsI TGGCCA 1 cut(s) 3036
MluNI TGGCCA 1 cut(s) 3036
MlyI GAGTC 2 cut(s) 1405, 1976
MmeI TCCRAC 2 cut(s) 850, 1427
Mox20I TGGCCA 1 cut(s) 3036
Mph1103I ATGCAT 2 cut(s) 2400, 2880
MroI TCCGGA 2 cut(s) 2918, 3113
MroXI GAANNNNTTC 2 cut(s) 2513, 3372
MscI TGGCCA 1 cut(s) 3036
MslI CAYNNNNRTG 3 cut(s) 1284, 3201, 3666
Msp20I TGGCCA 1 cut(s) 3036
MspA1I CMGCKG 2 cut(s) 863, 1785
MspCI CTTAAG 1 cut(s) 2438
MspI CCGG 4 cut(s) 23, 2919, 3114, 3173
MspR9I CCNGG 2 cut(s) 855, 1857
MssI GTTTAAAC 1 cut(s) 3702
MunI CAATTG 2 cut(s) 739, 824
Mva1269I GAATGC 3 cut(s) 848, 905, 2362
MvaI CCWGG 2 cut(s) 855, 1857
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 5 cut(s) 755, 843, 2072, 3169, 3611
NcoI CCATGG 1 cut(s) 2775
NdeI CATATG 2 cut(s) 979, 2384
NmeAIII GCCGAG 1 cut(s) 3686
NmuCI GTSAC 5 cut(s) 334, 1176, 1609, 2038, 2318
NsiI ATGCAT 2 cut(s) 2400, 2880
NspI RCATGY 6 cut(s) 490, 1283, 2398, 3065, 3248, 3450
NspV TTCGAA 1 cut(s) 840
PaeI GCATGC 3 cut(s) 490, 3065, 3450
PagI TCATGA 3 cut(s) 679, 1360, 1585
PaqCI CACCTGC 1 cut(s) 2992
PasI CCCWGGG 1 cut(s) 854
PceI AGGCCT 1 cut(s) 758
PctI GAATGC 3 cut(s) 848, 905, 2362
PdmI GAANNNNTTC 2 cut(s) 2513, 3372
PflFI GACNNNGTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 2594
PleI GAGTC 2 cut(s) 1404, 1976
PmaCI CACGTG 1 cut(s) 3686
PmeI GTTTAAAC 1 cut(s) 3702
PmlI CACGTG 1 cut(s) 3686
PpsI GAGTC 2 cut(s) 1404, 1976
Ppu21I YACGTR 1 cut(s) 3686
PpuMI RGGWCCY 1 cut(s) 850
PshBI ATTAAT 1 cut(s) 777
PsiI TTATAA 1 cut(s) 1812
Psp124BI GAGCTC 2 cut(s) 41, 93
Psp1406I AACGTT 1 cut(s) 3697
Psp5II RGGWCCY 1 cut(s) 850
Psp6I CCWGG 2 cut(s) 853, 1855
PspCI CACGTG 1 cut(s) 3686
PspEI GGTNACC 2 cut(s) 2318, 3182
PspFI CCCAGC 2 cut(s) 211, 846
PspGI CCWGG 2 cut(s) 853, 1855
PspPI GGNCC 3 cut(s) 800, 850, 2829
PspPPI RGGWCCY 1 cut(s) 850
PstI CTGCAG 4 cut(s) 1141, 1762, 2230, 3070
PstNI CAGNNNCTG 1 cut(s) 2594
PsuI RGATCY 6 cut(s) 383, 872, 1517, 2608, 3078, 3429
PsyI GACNNNGTC 1 cut(s) 518
PvuII CAGCTG 2 cut(s) 863, 1785
RsaI GTAC 6 cut(s) 510, 610, 1008, 1578, 2033, 2513
RsaNI GTAC 6 cut(s) 509, 609, 1007, 1577, 2032, 2512
RseI CAYNNNNRTG 3 cut(s) 1284, 3201, 3666
SacI GAGCTC 2 cut(s) 41, 93
SalI GTCGAC 1 cut(s) 3552
Sau96I GGNCC 3 cut(s) 800, 850, 2829
ScaI AGTACT 1 cut(s) 2513
SchI GAGTC 2 cut(s) 1405, 1976
ScrFI CCNGG 2 cut(s) 855, 1857
SduI GDGCHC 8 cut(s) 41, 93, 434, 537, 555, 1748, 1876, 3547
SfaNI GCATC 9 cut(s) 661, 1490, 2152, 2545, 2715, 2938, 3156, 3339, 3623
SfcI CTRYAG 5 cut(s) 1137, 1758, 1963, 2226, 3066
SfuI TTCGAA 1 cut(s) 840
SinI GGWCC 3 cut(s) 800, 850, 2829
SmiMI CAYNNNNRTG 3 cut(s) 1284, 3201, 3666
SmlI CTYRAG 7 cut(s) 900, 1637, 1984, 2438, 2697, 2978, 3249
SmoI CTYRAG 7 cut(s) 900, 1637, 1984, 2438, 2697, 2978, 3249
SpeI ACTAGT 1 cut(s) 3571
SphI GCATGC 3 cut(s) 490, 3065, 3450
SseBI AGGCCT 1 cut(s) 758
SsiI CCGC 5 cut(s) 29, 266, 2826, 2839, 3320
SspI AATATT 3 cut(s) 767, 1129, 1315
SspMI CTAG 8 cut(s) 75, 834, 1341, 1869, 2496, 3572, 3711, 3718
SstI GAGCTC 2 cut(s) 41, 93
StuI AGGCCT 1 cut(s) 758
StyD4I CCNGG 2 cut(s) 853, 1855
StyI CCWWGG 1 cut(s) 2775
TaiI ACGT 7 cut(s) 72, 233, 318, 1819, 2045, 3688, 3700
TaqII GACCGA 1 cut(s) 36
TatI WGTACW 2 cut(s) 1006, 2511
TscAI CASTG 5 cut(s) 523, 1291, 1762, 2043, 2225
TseFI GTSAC 5 cut(s) 334, 1176, 1609, 2038, 2318
Tsp45I GTSAC 5 cut(s) 334, 1176, 1609, 2038, 2318
TspGWI ACGGA 2 cut(s) 1899, 3315
TspRI CASTG 5 cut(s) 523, 1291, 1762, 2043, 2225
Tth111I GACNNNGTC 1 cut(s) 518
Van91I CCANNNNNTGG 1 cut(s) 2594
Vha464I CTTAAG 1 cut(s) 2438
VneI GTGCAC 2 cut(s) 533, 551
VpaK11BI GGWCC 3 cut(s) 800, 850, 2829
VspI ATTAAT 1 cut(s) 777
XagI CCTNNNNNAGG 1 cut(s) 1932
XceI RCATGY 6 cut(s) 490, 1283, 2398, 3065, 3248, 3450
XcmI CCANNNNNNNNNTGG 4 cut(s) 1600, 3142, 3219, 3545
XmiI GTMKAC 2 cut(s) 895, 3553
XmnI GAANNNNTTC 2 cut(s) 2513, 3372
XspI CTAG 8 cut(s) 75, 834, 1341, 1869, 2496, 3572, 3711, 3718
ZraI GACGTC 1 cut(s) 2043
ZrmI AGTACT 1 cut(s) 2513
Zsp2I ATGCAT 2 cut(s) 2400, 2880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.