Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

18864414 .. 18865889

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1230500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGGGCGTAAAGCCGTTGCCGGAGGCGGTGCGTAGCTCGATGCGCTCTGGAGTTGTTCTGCTCGAGCTGACTAGCTTTGTGGAGGAGCTGATTTTTAATAGCTTGTATGCCGGCGCAACGAAGGTATCGGTTTTCGTAGGTGTTGGGACATGCTATGTAAAAGGATGCAAATGTTTGTATCTTGGAATGGATGATAACAGGAAGGATGTGGGTACTACAGTTGTTGTTCGTGATCTGTTCTACAATCAACCAGTTCGGAGGAAGTACATGCAATCCAGCCCCAAGAAAGTATTGCACTCTGTCAATAAATGTGTACATCGGATCGCCCTTGTGCACTCAAATGTTTCCTTCAAAGTTGTAGACATTGAAAGTGAGGATGAGCTTCTTCGTACAACTCCTTCTCCCTCTCCCTTGATACTATTGAAAAGGACTTTTGGGACTGAGATCTCCAATGCTCTTCATGAATTGAACATAAGTGATGGCAGATTAGAGCTTTCTGGATACATATCTACTCCTTGCAATAACCTTGCTGATAAGGCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

183

Amino Acids

20.2

Weight (kDa)

8.98

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	332
AfaI	GTAC	4 cut(s)	217, 269, 318, 394
AgsI	TTSAA	4 cut(s)	355, 371, 427, 472
AluBI	AGCT	7 cut(s)	39, 70, 78, 91, 105, 385, 496
AluI	AGCT	7 cut(s)	39, 70, 78, 91, 105, 385, 496
Alw21I	GWGCWC	1 cut(s)	339
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	540
ApaLI	GTGCAC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	48, 119
AvaI	CYCGRG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	339
BaeI	ACNNNNGTAYC	4 cut(s)	111, 144, 207, 240
BarI	GAAGNNNNNNTAC	2 cut(s)	385, 417
Bbv12I	GWGCWC	1 cut(s)	339
BccI	CCATC	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	497
BfaI	CTAG	2 cut(s)	75, 547
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	497
BglII	AGATCT	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	33, 158
BpmI	CTGGAG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	508
BsaXI	ACNNNNNCTCC	2 cut(s)	388, 418
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	508
BseGI	GGATG	4 cut(s)	173, 199, 214, 385
BseJI	GATNNNNATC	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	339
BshFI	GGCC	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	23, 114
BslFI	GGGAC	2 cut(s)	163, 454
BsmFI	GGGAC	2 cut(s)	163, 454
BsnI	GGCC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	235, 324, 447
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	463
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	3 cut(s)	235, 324, 447
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	173, 199, 214, 385
BstHHI	GCGC	2 cut(s)	48, 119
BstKTI	GATC	3 cut(s)	238, 327, 450
BstMBI	GATC	3 cut(s)	235, 324, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 539
BstNSI	RCATGY	2 cut(s)	156, 274
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	542
BtsCI	GGATG	4 cut(s)	173, 199, 214, 385
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	48, 119
Cfr10I	RCCGGY	1 cut(s)	113
Csp6I	GTAC	4 cut(s)	216, 268, 317, 393
CviAII	CATG	3 cut(s)	153, 271, 464
CviQI	GTAC	4 cut(s)	216, 268, 317, 393
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	3 cut(s)	237, 326, 449
DpnII	GATC	3 cut(s)	235, 324, 447
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	65
FaeI	CATG	3 cut(s)	156, 274, 467
FaiI	YATR	7 cut(s)	111, 154, 159, 272, 465, 476, 509
FaqI	GGGAC	2 cut(s)	163, 454
FatI	CATG	3 cut(s)	152, 270, 463
FblI	GTMKAC	1 cut(s)	363
FokI	GGATG	4 cut(s)	180, 206, 221, 392
FspBI	CTAG	2 cut(s)	75, 547
GlaI	GCGC	2 cut(s)	47, 118
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	2 cut(s)	23, 114
HhaI	GCGC	2 cut(s)	48, 119
Hin1II	CATG	3 cut(s)	156, 274, 467
Hin6I	GCGC	2 cut(s)	46, 117
HinP1I	GCGC	2 cut(s)	46, 117
HpaII	CCGG	2 cut(s)	23, 114
Hpy166II	GTNNAC	3 cut(s)	317, 337, 364
Hpy188I	TCNGA	2 cut(s)	261, 324
Hpy188III	TCNNGA	4 cut(s)	51, 233, 464, 501
Hpy8I	GTNNAC	3 cut(s)	317, 337, 364
HpyAV	CCTTC	4 cut(s)	118, 199, 361, 411
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	171, 274, 298, 337, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 539
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	156, 274, 467
HspAI	GCGC	2 cut(s)	46, 117
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	235, 324, 447
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	36, 36, 127, 187, 267, 292, 486
LweI	GCATC	2 cut(s)	33, 158
MaeI	CTAG	2 cut(s)	75, 547
MalI	GATC	3 cut(s)	237, 326, 449
MboI	GATC	3 cut(s)	235, 324, 447
MboII	GAAGA	2 cut(s)	380, 452
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	1 cut(s)	467
MnlI	CCTC	5 cut(s)	19, 79, 255, 370, 418
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	2 cut(s)	23, 114
MwoI	GCNNNNNNNGC	2 cut(s)	45, 539
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	3 cut(s)	235, 324, 447
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	156, 274, 467
NspI	RCATGY	2 cut(s)	156, 274
PaeR7I	CTCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	465
PdiI	GCCGGC	1 cut(s)	115
PspXI	VCTCGAGB	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	447
RsaI	GTAC	4 cut(s)	217, 269, 318, 394
RsaNI	GTAC	4 cut(s)	216, 268, 317, 393
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	235, 324, 447
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	2 cut(s)	33, 158
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	467
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	75, 547
StuI	AGGCCT	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	41, 66
TasI	AATT	1 cut(s)	467
TatI	WGTACW	2 cut(s)	267, 316
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	452, 480
VneI	GTGCAC	1 cut(s)	335
XceI	RCATGY	2 cut(s)	156, 274
XhoI	CTCGAG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	75, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.