Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

9794448 .. 9802000

Gene Structure 7553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3765 bp

ATGAGGAGCTTGAGGCGGTTGCCGGAGGCAGTTCGGAGCTCGATTCGGTCTGGGGTGATTCTGTATGACGTGGCTAGGGTTGTGGAGGAGCTCGTCTTTAATAGCTTGGACGCTGGCGCAAGAAAGGTGTCAGTTTTCGTAGGAATTGGGACTTGTTATGTGAAAGTAGTTGATGATGGATGTGGGATTACTCGTGATGGATTGGTGTTGTTGGGAGAAAGATATGCCACGTCGAAGTTTGAACAATTTACTGAGGCGGATGCTGCCAGTGTGAGCTTTGGTTCCAGAGGGGAAGCACTGGCTTCGATTTCTGACGTGGCATTGCTTGAAGTTGTAACCAAAGCTTCTGGGAGGCCAAATGGGTATCGCAAAGTGATGAAGGGATTCAAATGTTTGTATCTTGGGGTAGATGACGATAGGAAGGATGTTGGCACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGGAGGAAGTGCATGCGATCCAGCCCGAAGAAGGTATTGGACACTGTCAAGAAATGTGTACACAGGATCGCACTGGTGCACTCAATGGTTTCCTTCAAAGTTGTCGATATGGAGAGTGAGGATGAGCTTCTTCGTACCATTCCTTCTCCTTCTCCCATGACATTATTGGAAAGTGCTTTTGGGAGCGAGGTCTCTGATGCACTTCACGAATTGAACATAAGTGACGGAAAATTAGAGCTTTCTGGATACATATCTACTCCTTGCAATAGTCTCGCCATTAAGGCCATCCAATATTTCTATATTAATTCACGGTTCATTTGCAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACAGCTGCTGTTGGATCCCGCAACAGGAAGAGAAGTAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAAGTTGTCCCCAATCATTCTATGATTTAAACTTTGAACCATCGAAGACATATGCTGAGTTCAAGGATTGGGGTCCTGTACTCAACTTTATTGATAAGGCCATTCAAAGCTTCTGGAAGGAAAAGATATCCTATGAATCTGTTTGTCATGGAGCTGATATACGAAGCGAAGGTCAAATGTGGGAGGAACGTGACAACACTGTATCTGTAGATGAAAATTTGCTGGATGTAGATTTGTCAGAAATGTCTCCAATAAGGAAAAAGAGGAGCAGGATACAAGATCTTGAGACTTCTCCGGACATTATGAAGATTCTAAGTAAAGAGGGCAGCGATGTATCTCAGAGGAAATATATCAGAATTCCATTTGACTACTTGCATGAAAATACTGATGATGTCAAAGGCTTCAAAGATCGAGATAGTGAGATTGATTTTCGTCATGATAGTGACTATTCATTTCAACCACAGGATCAGAATCTTGCTAAATGTATGGTCGCAACAACTCTGAAGAGGGAAAATCATAGTTGGATGTCTGATATCAATTTTTCACCTGATGAAGATTATATGATGGATAGTGGCTACTCTGCTGCCAAAAGATCCAGTAATTTGGAAGATAATATGTTTACCTCAGCATGGCAAGATCAGCCCTTTAAACTCTGTGCTAGTGTTAGCAAGGTTTCAGCAGATACTGGAGTATCACATCATGATTTCAGTAGCAATGTAGAGGTCACCTGTGATTTAAGACAACCTTTCCTCAATAGTTGTTCCTCCCGAGGAAGGCTTCCATCTGAGAGGGATTTGCTTACAGAGAGTGGGATTAAATGTCAAAATGATTACTTTGGGAGCAAGAGAATGCAGGATGGCTCTTACAACACTTTAGACTTTTCAGAAATTGATGGCAGCAGCAAGAGAATTCGGAGTGGTTCTTATAACAGTGTAGAAGTTCCAGATATCTCTTCAATGACTTCATCCCCAGGGATGGTTTCTAGTGCTCAGCCCTATGCCAGAGTTAGATCAAAGTTTGACCCGTTTGCAGAGTTTGACCCTCTGTCAAGAGCTAATTTGAATTCAATTCCATCCTGTAAGGGCCGTTTAGATGAGGCAAGTTTAGACATAAGTGAAGAGTATATTGGTTCGTGCAACCAGACCTTAAAAACTGAATGGTACTCTGTGACATCCAATCCGTTATCCCAAAGTACCTATTTGGATTTTGAACCTTTCTCTAATGAAGATTCAGTTGAAGGGCATTACAGATATAAATATGATAAGAGGGATACTGACAAATATTTTGTTGATGCTGAAGAATTTGAATGCAGCTTTGGATCGGATATAGTGTCAAATATCAGAGAACACTGCATTACAGATATAGACTGTGGACTAGGTTATAATGACAATGCTGGTTCTAGAAAATTCCTTCACCAAGACAATATAGATAGAGAGTTTTCTAGTGGACGCCGAGGTAAATTAGCTTATGAGACAGACTGGTTAAGCTGGCATTCACGCAGCAAAGATAACATTTGTATTGACATGCATAATAGACATGAGGAGCAGTCAAAATATCGGGATTGTCTCAAGAGTCATGTTTTAAACAGAAGATCGATACGAAGCCACTCAGCTCCACCATTTCCTAGAAGCAAGAGGAAGTACTTCACTTTAAATCATCCTGCGACAACAGCAGGCAAACATGATGCACAAACCTTCCATGATTCAGCTACTTATCCAGAAGCTGGCACAGTGAAGGATCTCTGTCAACCTCGTAATGGTAATCATCAAAATTTGAAGACAACTTCTGTGGAGGATTTATTGTTAGACACCAGACCAGATATTAACGCTGGTGCAAGCAAGATGCAAAAATTGGAAATGTTTGAACAATCTAAAAGGTCTGAGGTTCAAGCCACAGCTCCAATTAAAGAAATTATATCCATGAATCAAGATTCGCTGAATTGTGGGACCAAATGGCGGAATTGTTGTCCCCAAATTATAAGCAAAAGTAAAGTGCACGGTGTTCAAGATGGAAATGATATACTTGACATATCTTCCGGATTCTTGAATCTTGCTGCTGACTCATTAGTTCCTGAATCTCTCCATAAGAACTGTCTCAAGCATTCCAGAGTTCTTCAGCAGGTGGATAAGAAATTTATTCCAGTCATGGCCGGCCAAACACTTGCTGTTATTGACCAGCATGCTGCAGATGAAAGGATCCGATTGGAGGAGCTGCGTCACAAGGTTTTGTCTGGAGATGGAGAAGCAAAGACCGTTACTTTTCTGGATTTTGAACAAGAGCTGGTGCTGCCAGAGATTGGTTACCAGTTACTGCATAACTATGCTAAAACAATAGAAGAGTGGGGTTGGCGCTGCAACATACATGCTCAAGATTCAGGGTCTTTCAAGAGGAATTTGAATTTCCTTCACAGGCAGCCAACCGTCATCACACTTATTGCGGTTCCCTGCATCTTAGGTGTCAATTTATCTGATGTAGATCTTATGGAATTTCTTCAGCAGCTTTCTGATACAGATGGATCATCAACAATGCCACCATCTGTTCTTCGAATCCTAAATTCTAAAGCATGTAGAGGTGCAATTATGTTTGGGGATTCCTTGCTACCTTCAGAGTGTTGCCTCATCGTTGATGAGCTAAAGCAGACCTCATTGTGTTTCCAATGTGCTCATGGTCGACCAACAACCGCCCCACTAGTAAATTTGGAAGCGTTGCACAAGCAAATAGCTAAGATTGCATCTTTGAATCTGAACAATGGTGCAGATCAGGCGTGGCATGGGTTACATCAACATGAGCTTAGTCTTGCACGTGCAGAACAACGTTTAAACTCGGCTACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1254

Amino Acids

141.12

Weight (kDa)

5.97

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	22 - 120	1.7e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	215 - 347	3.1e-12	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	1014 - 1175	3.4e-09	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1854, 2310, 2906
AarI	CACCTGC	1 cut(s)	3037
Acc36I	ACCTGC	1 cut(s)	3037
AccB7I	CCANNNNNTGG	2 cut(s)	2651, 3224
AccI	GTMKAC	2 cut(s)	895, 3598
AccIII	TCCGGA	2 cut(s)	1222, 2963
AciI	CCGC	6 cut(s)	16, 257, 877, 2884, 3365, 3609
AclI	AACGTT	1 cut(s)	3742
AcoI	YGGCCR	2 cut(s)	3075, 3079
AcuI	CTGAAG	5 cut(s)	1451, 2244, 3026, 3404, 3516
AcvI	CACGTG	1 cut(s)	3731
AcyI	GRCGYC	1 cut(s)	2377
AfaI	GTAC	6 cut(s)	534, 610, 1008, 2090, 2122, 2570
AhdI	GACNNNNNGTC	1 cut(s)	1972
AhlI	ACTAGT	1 cut(s)	3616
AjiI	CACGTC	3 cut(s)	70, 231, 316
AjnI	CCWGG	2 cut(s)	853, 1897
AjuI	GAANNNNNNNTTGG	8 cut(s)	494, 526, 636, 668, 2037, 2069, 2226, 2258
Alw21I	GWGCWC	6 cut(s)	41, 93, 555, 1918, 2925, 3592
Alw26I	GTCTC	7 cut(s)	670, 749, 1179, 1208, 2393, 2498, 3026
Alw44I	GTGCAC	2 cut(s)	551, 2921
AlwNI	CAGNNNCTG	4 cut(s)	866, 1613, 2651, 3238
Ama87I	CYCGRG	1 cut(s)	1695
Aor13HI	TCCGGA	2 cut(s)	1222, 2963
AoxI	GGCC	7 cut(s)	353, 756, 828, 1026, 2011, 3075, 3079
ApaLI	GTGCAC	2 cut(s)	551, 2921
ArsI	GACNNNNNNTTYG	4 cut(s)	1084, 1116, 2195, 2227
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	3 cut(s)	383, 2570, 3417
AspLEI	GCGC	2 cut(s)	119, 3279
AspS9I	GGNCC	5 cut(s)	800, 850, 1001, 2011, 2874
AsuHPI	GGTGA	4 cut(s)	67, 1464, 1645, 2333
AsuII	TTCGAA	2 cut(s)	840, 3472
AvaI	CYCGRG	1 cut(s)	1695
AvaII	GGWCC	4 cut(s)	800, 850, 1001, 2874
BaeGI	GKGCMC	2 cut(s)	555, 2925
BaeI	ACNNNNGTAYC	4 cut(s)	1602, 1602, 1635, 1635
BamHI	GGATCC	2 cut(s)	872, 3123
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	3731
BbsI	GAAGAC	2 cut(s)	980, 2711
Bbv12I	GWGCWC	6 cut(s)	41, 93, 555, 1918, 2925, 3592
BbvCI	CCTCAGC	1 cut(s)	1552
BceAI	ACGGC	1 cut(s)	1998
BcgI	CGANNNNNNTGC	4 cut(s)	285, 319, 727, 761
BciT130I	CCWGG	2 cut(s)	855, 1899
BciVI	GTATCC	3 cut(s)	713, 1194, 2191
BcoDI	GTCTC	7 cut(s)	670, 749, 1179, 1208, 2393, 2498, 3026
BcuI	ACTAGT	1 cut(s)	3616
BfmI	CTRYAG	2 cut(s)	1134, 3111
BfoI	RGCGCY	1 cut(s)	3280
BfuAI	ACCTGC	1 cut(s)	3037
BfuI	GTATCC	3 cut(s)	713, 1194, 2191
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	2 cut(s)	1207, 3403
BlpI	GCTNAGC	1 cut(s)	1917
BmcAI	AGTACT	1 cut(s)	2570
Bme1390I	CCNGG	2 cut(s)	855, 1899
Bme18I	GGWCC	4 cut(s)	800, 850, 1001, 2874
BmeRI	GACNNNNNGTC	1 cut(s)	1972
BmeT110I	CYCGRG	1 cut(s)	1695
BmgBI	CACGTC	3 cut(s)	70, 231, 316
BmgT120I	GGNCC	5 cut(s)	800, 850, 1001, 2011, 2874
BmiI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
BmrFI	CCNGG	2 cut(s)	855, 1899
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	7 cut(s)	250, 661, 2209, 2602, 2760, 3384, 3668
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	980, 2711
BpmI	CTGGAG	2 cut(s)	1635, 3180
Bpu10I	CCTNAGC	1 cut(s)	1552
Bpu1102I	GCTNAGC	1 cut(s)	1917
Bpu14I	TTCGAA	2 cut(s)	840, 3472
BpuEI	CTTGAG	6 cut(s)	31, 885, 1232, 2480, 3008, 3279
Bsa29I	ATCGAT	1 cut(s)	2522
BsaAI	YACGTR	1 cut(s)	3731
BsaBI	GATNNNNATC	3 cut(s)	724, 1398, 3402
BsaHI	GRCGYC	1 cut(s)	2377
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	6 cut(s)	853, 854, 1696, 1897, 1898, 2380
BsaWI	WCCGGW	2 cut(s)	1222, 2963
Bse118I	RCCGGY	1 cut(s)	3077
Bse3DI	GCAATG	2 cut(s)	320, 1648
Bse8I	GATNNNNATC	3 cut(s)	724, 1398, 3402
BseAI	TCCGGA	2 cut(s)	1222, 2963
BseBI	CCWGG	2 cut(s)	855, 1899
BseCI	ATCGAT	1 cut(s)	2522
BseDI	CCNNGG	6 cut(s)	853, 854, 1696, 1897, 1898, 2380
BseJI	GATNNNNATC	3 cut(s)	724, 1398, 3402
BseMI	GCAATG	2 cut(s)	320, 1648
BseMII	CTCAG	8 cut(s)	243, 975, 1280, 1566, 1704, 1931, 2550, 2799
BseRI	GAGGAG	5 cut(s)	19, 101, 1207, 2483, 3149
BseSI	GKGCMC	2 cut(s)	555, 2925
BseYI	CCCAGC	1 cut(s)	846
BsgI	GTGCAG	2 cut(s)	3702, 3753
BshFI	GGCC	7 cut(s)	355, 758, 830, 1028, 2013, 3077, 3081
BshVI	ATCGAT	1 cut(s)	2522
BsiHKAI	GWGCWC	6 cut(s)	41, 93, 555, 1918, 2925, 3592
BsiHKCI	CYCGRG	1 cut(s)	1695
BsiSI	CCGG	4 cut(s)	23, 1223, 2964, 3078
BslFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2880, 2887
BsmAI	GTCTC	7 cut(s)	670, 749, 1179, 1208, 2393, 2498, 3026
BsmFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2880, 2887
BsmI	GAATGC	6 cut(s)	848, 905, 1782, 2240, 2419, 3028
BsnI	GGCC	7 cut(s)	355, 758, 830, 1028, 2013, 3077, 3081
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	1695
Bsp119I	TTCGAA	2 cut(s)	840, 3472
Bsp1286I	GDGCHC	6 cut(s)	41, 93, 555, 1918, 2925, 3592
Bsp13I	TCCGGA	2 cut(s)	1222, 2963
Bsp1407I	TGTACA	1 cut(s)	532
Bsp1720I	GCTNAGC	1 cut(s)	1917
BspACI	CCGC	6 cut(s)	16, 257, 877, 2884, 3365, 3609
BspANI	GGCC	7 cut(s)	355, 758, 830, 1028, 2013, 3077, 3081
BspCNI	CTCAG	8 cut(s)	244, 976, 1279, 1565, 1705, 1930, 2549, 2800
BspDI	ATCGAT	1 cut(s)	2522
BspEI	TCCGGA	2 cut(s)	1222, 2963
BspHI	TCATGA	2 cut(s)	1363, 1627
BspLI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
BspMAI	CTGCAG	1 cut(s)	3115
BspMI	ACCTGC	1 cut(s)	3037
BspT104I	TTCGAA	2 cut(s)	840, 3472
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	320, 1648
BsrFI	RCCGGY	1 cut(s)	3077
BsrGI	TGTACA	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	3077
BssECI	CCNNGG	6 cut(s)	853, 854, 1696, 1897, 1898, 2380
BssNI	GRCGYC	1 cut(s)	2377
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	855, 1899
Bst6I	CTCTTC	5 cut(s)	881, 1427, 1885, 2040, 3258
BstACI	GRCGYC	1 cut(s)	2377
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	3731
BstBI	TTCGAA	2 cut(s)	840, 3472
BstC8I	GCNNGC	8 cut(s)	115, 488, 2417, 2602, 2653, 2764, 3079, 3108
BstEII	GGTNACC	2 cut(s)	1651, 3227
BstH2I	RGCGCY	1 cut(s)	3280
BstHHI	GCGC	2 cut(s)	119, 3279
BstMAI	GTCTC	7 cut(s)	670, 749, 1179, 1208, 2393, 2498, 3026
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 755, 843, 1567, 2597, 3214, 3656, 3689
BstNI	CCWGG	2 cut(s)	855, 1899
BstNSI	RCATGY	5 cut(s)	490, 2455, 3110, 3293, 3495
BstPI	GGTNACC	2 cut(s)	1651, 3227
BstSCI	CCNGG	2 cut(s)	853, 1897
BstSFI	CTRYAG	2 cut(s)	1134, 3111
BstSLI	GKGCMC	2 cut(s)	555, 2925
BstV2I	GAAGAC	2 cut(s)	980, 2711
BstX2I	RGATCY	6 cut(s)	872, 1207, 1520, 2665, 3123, 3403
BstXI	CCANNNNNNTGG	1 cut(s)	1531
BstYI	RGATCY	6 cut(s)	872, 1207, 1520, 2665, 3123, 3403
Bsu15I	ATCGAT	1 cut(s)	2522
BsuI	GTATCC	3 cut(s)	713, 1194, 2191
BsuRI	GGCC	7 cut(s)	355, 758, 830, 1028, 2013, 3077, 3081
BsuTUI	ATCGAT	1 cut(s)	2522
BtgZI	GCGATG	1 cut(s)	1272
BtrI	CACGTC	3 cut(s)	70, 231, 316
BtsI	GCAGTG	1 cut(s)	2275
BtsIMutI	CAGTG	8 cut(s)	274, 296, 516, 545, 1125, 1864, 2275, 2664
BveI	ACCTGC	1 cut(s)	3037
Cac8I	GCNNGC	8 cut(s)	115, 488, 2417, 2602, 2653, 2764, 3079, 3108
CaiI	CAGNNNCTG	4 cut(s)	866, 1613, 2651, 3238
CciI	TCATGA	2 cut(s)	1363, 1627
CfoI	GCGC	2 cut(s)	119, 3279
Cfr10I	RCCGGY	1 cut(s)	3077
Cfr13I	GGNCC	5 cut(s)	800, 850, 1001, 2011, 2874
ClaI	ATCGAT	1 cut(s)	2522
CseI	GACGC	3 cut(s)	119, 2385, 3131
Csp6I	GTAC	6 cut(s)	533, 609, 1007, 2089, 2121, 2569
CspCI	CAANNNNNGTGG	2 cut(s)	2697, 2732
CviQI	GTAC	6 cut(s)	533, 609, 1007, 2089, 2121, 2569
DraI	TTTAAA	5 cut(s)	957, 1576, 2511, 2580, 3747
DriI	GACNNNNNGTC	1 cut(s)	1972
EaeI	YGGCCR	2 cut(s)	3075, 3079
Eam1104I	CTCTTC	5 cut(s)	881, 1427, 1885, 2040, 3258
Eam1105I	GACNNNNNGTC	1 cut(s)	1972
EarI	CTCTTC	5 cut(s)	881, 1427, 1885, 2040, 3258
EciI	GGCGGA	2 cut(s)	272, 2899
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	3 cut(s)	1056, 1462, 1876
Eco47I	GGWCC	4 cut(s)	800, 850, 1001, 2874
Eco53kI	GAGCTC	2 cut(s)	39, 91
Eco57I	CTGAAG	5 cut(s)	1451, 2244, 3026, 3404, 3516
Eco72I	CACGTG	1 cut(s)	3731
Eco88I	CYCGRG	1 cut(s)	1695
Eco91I	GGTNACC	2 cut(s)	1651, 3227
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoO109I	RGGNCCY	2 cut(s)	850, 1001
EcoO65I	GGTNACC	2 cut(s)	1651, 3227
EcoRI	GAATTC	3 cut(s)	1284, 1836, 1990
EcoRII	CCWGG	2 cut(s)	853, 1897
EcoRV	GATATC	3 cut(s)	1056, 1462, 1876
EcoT22I	ATGCAT	1 cut(s)	2457
EcoT38I	GRGCYC	2 cut(s)	41, 93
FalI	AAGNNNNNCTT	2 cut(s)	1657, 1689
FaqI	GGGAC	6 cut(s)	163, 863, 871, 921, 2880, 2887
FauI	CCCGC	1 cut(s)	884
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	2 cut(s)	895, 3598
FriOI	GRGCYC	2 cut(s)	41, 93
FseI	GGCCGGCC	1 cut(s)	3081
GlaI	GCGC	2 cut(s)	118, 3278
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	2 cut(s)	1635, 3180
HaeII	RGCGCY	1 cut(s)	3280
HaeIII	GGCC	7 cut(s)	355, 758, 830, 1028, 2013, 3077, 3081
HapII	CCGG	4 cut(s)	23, 1223, 2964, 3078
HgaI	GACGC	3 cut(s)	119, 2385, 3131
HhaI	GCGC	2 cut(s)	119, 3279
Hin1I	GRCGYC	1 cut(s)	2377
Hin6I	GCGC	2 cut(s)	117, 3277
HinP1I	GCGC	2 cut(s)	117, 3277
HincII	GTYRAC	2 cut(s)	2675, 3599
HindII	GTYRAC	2 cut(s)	2675, 3599
HindIII	AAGCTT	2 cut(s)	342, 1036
HpaII	CCGG	4 cut(s)	23, 1223, 2964, 3078
HphI	GGTGA	4 cut(s)	67, 1464, 1645, 2333
Hpy99I	CGWCG	1 cut(s)	235
HpyCH4IV	ACGT	6 cut(s)	69, 230, 315, 1117, 3730, 3742
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 755, 843, 1567, 2597, 3214, 3656, 3689
HpySE526I	ACGT	6 cut(s)	69, 230, 315, 1117, 3730, 3742
Hsp92I	GRCGYC	1 cut(s)	2377
HspAI	GCGC	2 cut(s)	117, 3277
KflI	GGGWCCC	1 cut(s)	850
Kpn2I	TCCGGA	2 cut(s)	1222, 2963
KroI	GCCGGC	1 cut(s)	3077
KroNI	GCCGGC	1 cut(s)	3079
LweI	GCATC	7 cut(s)	250, 661, 2209, 2602, 2760, 3384, 3668
MaeII	ACGT	6 cut(s)	69, 230, 315, 1117, 3730, 3742
MfeI	CAATTG	1 cut(s)	824
MflI	RGATCY	6 cut(s)	872, 1207, 1520, 2665, 3123, 3403
MhlI	GDGCHC	6 cut(s)	41, 93, 555, 1918, 2925, 3592
MlyI	GAGTC	2 cut(s)	2509, 2981
MmeI	TCCRAC	2 cut(s)	850, 1430
Mph1103I	ATGCAT	1 cut(s)	2457
MroI	TCCGGA	2 cut(s)	1222, 2963
MroNI	GCCGGC	1 cut(s)	3077
MroXI	GAANNNNTTC	3 cut(s)	383, 2570, 3417
MslI	CAYNNNNRTG	3 cut(s)	1368, 3246, 3711
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	4 cut(s)	23, 1223, 2964, 3078
MspR9I	CCNGG	2 cut(s)	855, 1899
MssI	GTTTAAAC	1 cut(s)	3747
MunI	CAATTG	1 cut(s)	824
Mva1269I	GAATGC	6 cut(s)	848, 905, 1782, 2240, 2419, 3028
MvaI	CCWGG	2 cut(s)	855, 1899
MwoI	GCNNNNNNNGC	8 cut(s)	263, 755, 843, 1567, 2597, 3214, 3656, 3689
NaeI	GCCGGC	1 cut(s)	3079
NdeI	CATATG	1 cut(s)	979
NgoMIV	GCCGGC	1 cut(s)	3077
NlaIV	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
NmeAIII	GCCGAG	2 cut(s)	2405, 3731
NmuCI	GTSAC	6 cut(s)	695, 1118, 1370, 1651, 2095, 3143
NsiI	ATGCAT	1 cut(s)	2457
NspI	RCATGY	5 cut(s)	490, 2455, 3110, 3293, 3495
NspV	TTCGAA	2 cut(s)	840, 3472
PaeI	GCATGC	2 cut(s)	490, 3110
PagI	TCATGA	2 cut(s)	1363, 1627
PaqCI	CACCTGC	1 cut(s)	3037
PasI	CCCWGGG	2 cut(s)	854, 1898
PctI	GAATGC	6 cut(s)	848, 905, 1782, 2240, 2419, 3028
PdiI	GCCGGC	1 cut(s)	3079
PdmI	GAANNNNTTC	3 cut(s)	383, 2570, 3417
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	2651, 3224
PleI	GAGTC	2 cut(s)	2508, 2981
PmaCI	CACGTG	1 cut(s)	3731
PmeI	GTTTAAAC	1 cut(s)	3747
PmlI	CACGTG	1 cut(s)	3731
PpsI	GAGTC	2 cut(s)	2508, 2981
Ppu21I	YACGTR	1 cut(s)	3731
PpuMI	RGGWCCY	2 cut(s)	850, 1001
PshBI	ATTAAT	1 cut(s)	777
PsiI	TTATAA	3 cut(s)	1854, 2310, 2906
Psp124BI	GAGCTC	2 cut(s)	41, 93
Psp1406I	AACGTT	1 cut(s)	3742
Psp5II	RGGWCCY	2 cut(s)	850, 1001
Psp6I	CCWGG	2 cut(s)	853, 1897
PspCI	CACGTG	1 cut(s)	3731
PspEI	GGTNACC	2 cut(s)	1651, 3227
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	2 cut(s)	853, 1897
PspN4I	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
PspPI	GGNCC	5 cut(s)	800, 850, 1001, 2011, 2874
PspPPI	RGGWCCY	2 cut(s)	850, 1001
PstI	CTGCAG	1 cut(s)	3115
PstNI	CAGNNNCTG	4 cut(s)	866, 1613, 2651, 3238
PsuI	RGATCY	6 cut(s)	872, 1207, 1520, 2665, 3123, 3403
PsyI	GACNNNGTC	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	863
RigI	GGCCGGCC	1 cut(s)	3081
RsaI	GTAC	6 cut(s)	534, 610, 1008, 2090, 2122, 2570
RsaNI	GTAC	6 cut(s)	533, 609, 1007, 2089, 2121, 2569
RseI	CAYNNNNRTG	3 cut(s)	1368, 3246, 3711
SacI	GAGCTC	2 cut(s)	41, 93
SalI	GTCGAC	1 cut(s)	3597
Sau96I	GGNCC	5 cut(s)	800, 850, 1001, 2011, 2874
ScaI	AGTACT	1 cut(s)	2570
SchI	GAGTC	2 cut(s)	2509, 2981
ScrFI	CCNGG	2 cut(s)	855, 1899
SduI	GDGCHC	6 cut(s)	41, 93, 555, 1918, 2925, 3592
SfaNI	GCATC	7 cut(s)	250, 661, 2209, 2602, 2760, 3384, 3668
SfcI	CTRYAG	2 cut(s)	1134, 3111
SfuI	TTCGAA	2 cut(s)	840, 3472
SinI	GGWCC	4 cut(s)	800, 850, 1001, 2874
SmiMI	CAYNNNNRTG	3 cut(s)	1368, 3246, 3711
SmlI	CTYRAG	6 cut(s)	10, 900, 1211, 2495, 3023, 3294
SmoI	CTYRAG	6 cut(s)	10, 900, 1211, 2495, 3023, 3294
SpeI	ACTAGT	1 cut(s)	3616
SphI	GCATGC	2 cut(s)	490, 3110
SsiI	CCGC	6 cut(s)	16, 257, 877, 2884, 3365, 3609
SspI	AATATT	2 cut(s)	767, 2210
SstI	GAGCTC	2 cut(s)	41, 93
StyD4I	CCNGG	2 cut(s)	853, 1897
TaiI	ACGT	6 cut(s)	72, 233, 318, 1120, 3733, 3745
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	3 cut(s)	532, 1006, 2568
TscAI	CASTG	8 cut(s)	274, 303, 523, 552, 1132, 1864, 2282, 2664
TseFI	GTSAC	6 cut(s)	695, 1118, 1370, 1651, 2095, 3143
Tsp45I	GTSAC	6 cut(s)	695, 1118, 1370, 1651, 2095, 3143
TspGWI	ACGGA	2 cut(s)	714, 2097
TspRI	CASTG	8 cut(s)	274, 303, 523, 552, 1132, 1864, 2282, 2664
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	2 cut(s)	2651, 3224
VneI	GTGCAC	2 cut(s)	551, 2921
VpaK11BI	GGWCC	4 cut(s)	800, 850, 1001, 2874
VspI	ATTAAT	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	2327
XceI	RCATGY	5 cut(s)	490, 2455, 3110, 3293, 3495
XcmI	CCANNNNNNNNNTGG	2 cut(s)	637, 3590
XmiI	GTMKAC	2 cut(s)	895, 3598
XmnI	GAANNNNTTC	3 cut(s)	383, 2570, 3417
ZrmI	AGTACT	1 cut(s)	2570
Zsp2I	ATGCAT	1 cut(s)	2457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.