Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

4986144 .. 4994193

Gene Structure 8050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0063600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAACTCCAGAAACTTCTCGGCAGCCGTGCCCGGACCGAATCCTCGACGACGCCGGAGGAGCCTTCGGGATGGGCGCCATCGGAGGAGGCGCGTACCACTTCTTCAAAGGAATCTACAACTCGCCCAGGGGAGCGCGTCTCTCCGGCGCGTCCCAGGCCATCCGGATGAACGCGCCGCGCGTGGGAGGCGGCTTCGCCGTATGGGGCGGCGTCTTCTCCACCTTCGACTGCGCGTTGGTCCACATTCGGAAAAAAGAGGACCCTTGGAACTCGATCATCTCCGGCGCGGCCACCGGCGGCTTCCTCCAGATGCGTCAGGGGCTCGGCGCGACGGCGAGGTCCGCCGCCGTGGGAGGGATGTTTTTGGCCCTAATCGAAGGCGCCGGGATCATTGTGGGCAAGTGCATGGAGCAGAAACAGAATGAGATGGCGATAGCTGCTGGTATGCACGGTCTGCCTGGACCGGAGGCGGTTGGGTCGGATGGAAGCTCCTCCGGTGGTTCGTGGTTGGGAGGGTGGTTTGGGAAAGGCAAAGAGGCTGAGGCGGCCGGCAGCGGAAGCGAGACGAAGGTTCTGGAGAGTTTTGATGCGCCTCCGGTGCCGAGTTTTGAGTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

207

Amino Acids

21.13

Weight (kDa)

6.83

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	15 - 122	7.6e-31	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	340
AccB1I	GGYRCC	3 cut(s)	77, 383, 601
AccII	CGCG	9 cut(s)	95, 139, 152, 176, 181, 183, 236, 290, 332
AccIII	TCCGGA	1 cut(s)	165
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	2 cut(s)	291, 549
AcyI	GRCGYC	4 cut(s)	54, 78, 213, 384
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	185, 357
AgsI	TTSAA	2 cut(s)	109, 619
AjnI	CCWGG	3 cut(s)	128, 156, 460
AluBI	AGCT	2 cut(s)	440, 492
AluI	AGCT	2 cut(s)	440, 492
Alw26I	GTCTC	2 cut(s)	146, 560
AlwI	GGATC	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	4 cut(s)	159, 291, 369, 549
ApeKI	GCWGC	3 cut(s)	25, 440, 555
AspS9I	GGNCC	6 cut(s)	37, 241, 262, 342, 370, 464
AsuC2I	CCSGG	2 cut(s)	35, 388
AvaII	GGWCC	5 cut(s)	37, 241, 262, 342, 464
BaeGI	GKGCMC	1 cut(s)	35
BanI	GGYRCC	3 cut(s)	77, 383, 601
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	37, 427, 567
BccI	CCATC	5 cut(s)	67, 89, 170, 424, 479
BceAI	ACGGC	4 cut(s)	13, 185, 335, 351
BciT130I	CCWGG	3 cut(s)	130, 158, 462
BcnI	CCSGG	2 cut(s)	35, 388
BcoDI	GTCTC	2 cut(s)	146, 560
BfoI	RGCGCY	2 cut(s)	81, 387
Bme1390I	CCNGG	5 cut(s)	35, 130, 158, 388, 462
Bme18I	GGWCC	5 cut(s)	37, 241, 262, 342, 464
BmgT120I	GGNCC	6 cut(s)	37, 241, 262, 342, 370, 464
BmiI	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
BmrFI	CCNGG	5 cut(s)	35, 130, 158, 388, 462
BmsI	GCATC	2 cut(s)	303, 580
BpiI	GAAGAC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	2 cut(s)	293, 599
Bpu10I	CCTNAGC	1 cut(s)	543
BpuMI	CCSGG	2 cut(s)	35, 388
BsaHI	GRCGYC	4 cut(s)	54, 78, 213, 384
BsaJI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BsaWI	WCCGGW	4 cut(s)	165, 466, 497, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 357
Bse118I	RCCGGY	2 cut(s)	296, 551
BseAI	TCCGGA	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	130, 158, 462
BseDI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BseGI	GGATG	5 cut(s)	78, 162, 174, 366, 490
BseLI	CCNNNNNNNGG	2 cut(s)	185, 357
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	3 cut(s)	75, 102, 484
BseSI	GKGCMC	1 cut(s)	35
BseX3I	CGGCCG	1 cut(s)	549
BseXI	GCAGC	3 cut(s)	37, 427, 567
Bsh1236I	CGCG	9 cut(s)	95, 139, 152, 176, 181, 183, 236, 290, 332
Bsh1285I	CGRYCG	1 cut(s)	552
BshFI	GGCC	4 cut(s)	161, 293, 371, 551
BshNI	GGYRCC	3 cut(s)	77, 383, 601
BsiEI	CGRYCG	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	185, 357
BsmAI	GTCTC	2 cut(s)	146, 560
BsmBI	CGTCTC	2 cut(s)	146, 560
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	4 cut(s)	161, 293, 371, 551
Bsp1286I	GDGCHC	2 cut(s)	35, 327
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	276, 390
BspANI	GGCC	4 cut(s)	161, 293, 371, 551
BspCNI	CTCAG	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	165
BspFNI	CGCG	9 cut(s)	95, 139, 152, 176, 181, 183, 236, 290, 332
BspLI	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	3 cut(s)	77, 383, 601
BsrFI	RCCGGY	2 cut(s)	296, 551
BssAI	RCCGGY	2 cut(s)	296, 551
BssECI	CCNNGG	5 cut(s)	128, 129, 156, 266, 351
BssMI	GATC	2 cut(s)	276, 390
BssNI	GRCGYC	4 cut(s)	54, 78, 213, 384
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	3 cut(s)	130, 158, 462
Bst4CI	ACNGT	1 cut(s)	455
BstACI	GRCGYC	4 cut(s)	54, 78, 213, 384
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	5 cut(s)	78, 162, 174, 366, 490
BstFNI	CGCG	9 cut(s)	95, 139, 152, 176, 181, 183, 236, 290, 332
BstH2I	RGCGCY	2 cut(s)	81, 387
BstKTI	GATC	2 cut(s)	279, 393
BstMAI	GTCTC	2 cut(s)	146, 560
BstMBI	GATC	2 cut(s)	276, 390
BstMCI	CGRYCG	1 cut(s)	552
BstNI	CCWGG	3 cut(s)	130, 158, 462
BstSCI	CCNGG	5 cut(s)	33, 128, 156, 386, 460
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	9 cut(s)	95, 139, 152, 176, 181, 183, 236, 290, 332
BstV1I	GCAGC	3 cut(s)	37, 427, 567
BstV2I	GAAGAC	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	549
BsuRI	GGCC	4 cut(s)	161, 293, 371, 551
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	5 cut(s)	78, 162, 174, 366, 490
Cac8I	GCNNGC	1 cut(s)	553
Cfr10I	RCCGGY	2 cut(s)	296, 551
Cfr13I	GGNCC	6 cut(s)	37, 241, 262, 342, 370, 464
CpoI	CGGWCCG	1 cut(s)	37
CseI	GACGC	5 cut(s)	62, 128, 141, 202, 305
Csp6I	GTAC	1 cut(s)	97
CspI	CGGWCCG	1 cut(s)	37
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	543
DinI	GGCGCC	2 cut(s)	79, 385
DpnI	GATC	2 cut(s)	278, 392
DpnII	GATC	2 cut(s)	276, 390
DrdI	GACNNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	2 cut(s)	291, 549
EagI	CGGCCG	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	334
EclXI	CGGCCG	1 cut(s)	549
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	5 cut(s)	37, 241, 262, 342, 464
Eco52I	CGGCCG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	128, 156, 460
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	327
EgeI	GGCGCC	2 cut(s)	79, 385
EheI	GGCGCC	2 cut(s)	79, 385
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	2 cut(s)	146, 560
FaeI	CATG	1 cut(s)	412
FaiI	YATR	3 cut(s)	205, 410, 449
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	408
FokI	GGATG	5 cut(s)	85, 149, 181, 373, 497
FriOI	GRGCYC	1 cut(s)	327
GsuI	CTGGAG	2 cut(s)	293, 599
HaeII	RGCGCY	2 cut(s)	81, 387
HaeIII	GGCC	4 cut(s)	161, 293, 371, 551
HgaI	GACGC	5 cut(s)	62, 128, 141, 202, 305
Hin1I	GRCGYC	4 cut(s)	54, 78, 213, 384
Hin1II	CATG	1 cut(s)	412
HinfI	GANTC	2 cut(s)	42, 114
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	86, 252, 484
Hpy188III	TCNNGA	5 cut(s)	11, 70, 166, 310, 578
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	53, 56, 337
HpyAV	CCTTC	4 cut(s)	76, 235, 374, 565
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	408, 451
HpyF3I	CTNAG	1 cut(s)	543
Hsp92I	GRCGYC	4 cut(s)	54, 78, 213, 384
Hsp92II	CATG	1 cut(s)	412
KasI	GGCGCC	2 cut(s)	77, 383
Kpn2I	TCCGGA	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	551
KroNI	GCCGGC	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	276, 390
LmnI	GCTCC	4 cut(s)	62, 134, 412, 497
Lsp1109I	GCAGC	3 cut(s)	37, 427, 567
LweI	GCATC	2 cut(s)	303, 580
MalI	GATC	2 cut(s)	278, 392
MboI	GATC	2 cut(s)	276, 390
MboII	GAAGA	2 cut(s)	97, 208
MhlI	GDGCHC	2 cut(s)	35, 327
Mly113I	GGCGCC	2 cut(s)	78, 384
MmeI	TCCRAC	1 cut(s)	462
MroI	TCCGGA	1 cut(s)	165
MroNI	GCCGGC	1 cut(s)	551
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	558
MspR9I	CCNGG	5 cut(s)	35, 130, 158, 388, 462
MteI	GCGCNGCGC	1 cut(s)	179
MvaI	CCWGG	3 cut(s)	130, 158, 462
MvnI	CGCG	9 cut(s)	95, 139, 152, 176, 181, 183, 236, 290, 332
NaeI	GCCGGC	1 cut(s)	553
NarI	GGCGCC	2 cut(s)	78, 384
NciI	CCSGG	2 cut(s)	35, 388
NdeII	GATC	2 cut(s)	276, 390
NgoMIV	GCCGGC	1 cut(s)	551
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
NmeAIII	GCCGAG	1 cut(s)	306
PasI	CCCWGGG	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	42, 114
PluTI	GGCGCC	2 cut(s)	81, 387
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	128, 156, 460
PspGI	CCWGG	3 cut(s)	128, 156, 460
PspN4I	GGNNCC	5 cut(s)	64, 79, 264, 385, 603
PspPI	GGNCC	6 cut(s)	37, 241, 262, 342, 370, 464
PspPPI	RGGWCCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	167
Rsr2I	CGGWCCG	1 cut(s)	37
RsrII	CGGWCCG	1 cut(s)	37
Sau3AI	GATC	2 cut(s)	276, 390
Sau96I	GGNCC	6 cut(s)	37, 241, 262, 342, 370, 464
ScrFI	CCNGG	5 cut(s)	35, 130, 158, 388, 462
SduI	GDGCHC	2 cut(s)	35, 327
SetI	ASST	5 cut(s)	227, 344, 442, 494, 576
SfaNI	GCATC	2 cut(s)	303, 580
SfoI	GGCGCC	2 cut(s)	79, 385
SgrAI	CRCCGGYG	1 cut(s)	296
SinI	GGWCC	5 cut(s)	37, 241, 262, 342, 464
SmiMI	CAYNNNNRTG	1 cut(s)	167
SspDI	GGCGCC	2 cut(s)	77, 383
StyD4I	CCNGG	5 cut(s)	33, 128, 156, 386, 460
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	455
TaqI	TCGA	4 cut(s)	48, 228, 275, 378
TaqII	GACCGA	1 cut(s)	54
TauI	GCSGC	7 cut(s)	181, 195, 213, 293, 303, 350, 551
TfiI	GAWTC	2 cut(s)	42, 114
TseI	GCWGC	3 cut(s)	25, 440, 555
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	5 cut(s)	37, 241, 262, 342, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.