Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

9454761 .. 9462389

Gene Structure 7629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3207 bp

ATGAGGAGCTTGAGGCGGTTGCCGGAGGCAGTTCGGAGCTCGATTCGGTCTGGGGTGATTCTGTATGACGTGGCTAGGGTTGTGGAGGAGCTCGTCTTTAATAGCTTGGACGCTGGCGCAAGAAAGGTGTCAGTTTTCGTAGGAATTGGGACTTGTTATGTGAAAGTAGTTGATGATGGATGTGGGATTACTCGTGATGGATTGGTGTTGTTGGGAGAAAGATATGCCACGTCGAAGTTTGAACAATTTACTGAGGCGGATGCTGCCAGTGTGAGCTTTGGTTCCAGAGGGGAAGCACTGGCTTCGATTTCTGACGTGGCATTGCTTGAAGTTGTAACCAAAGCTTCTGGGAGGCCAAATGGGTATCGCAAAGTGATGAAGGGATTCAAATGTTTGTATCTTGGGGTAGATGACGATAGGAAGGATGTTGGCACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGGAGGAAGTGCATGCGATCCAGCCCGAAGAAGGTATTGGACACTGTCAAGAAATGTGTACACAGGATCGCACTGGTGCACTCAATGGTTTCCTTCAAAGTTGTCGATATGGAGAGTGAGGATGAGCTTCTTCGTACCATTCCTTCTCCTTCTCCCATGACATTATTGGAAAGTGCTTTTGGGAGCGAGGTCTCTGATGCACTTCACGAATTGAACATAAGTGACGGAAAATTAGAGCTTTCTGGATACATATCTACTCCTTGCAATAGTCTCGCCATTAAGGCCATCCAATATTTCTATATTAATTCACGGTTCATTTGCAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACAGCTGCTGTTGGATCCCGCAACAGGAAGAGAAGTAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAAGTTGTCCCCAATCATTCTATGATTTAAACTTTGAACCATCGAAGACATATGCTGAGTTCAAGGATTGGGGTCCTGTACTCAACTTTATTGATAAGGCCATTCAAAGCTTCTGGAAGGAAAAGATATCCTATGTAGAATCTGTTTGTCATGGAGCTGATATACGAAGCGAAGGTCAAATGTGGGAGGAACGTGACAACACTGTATCTGTAGATGAAAATTTGCTGGATGTAGATTTGTCAGAAATGTCTCCAATAAGGAAAAAGAGGAGCAGGATACAAGATCTTGAGACTTCTCCGGACATTATGAAGATTCTAAGTAAAGAGGGCAGCGATGTATCTCAGAGGAAATATATCAGAATTCCATTTGACTACTTGCATGAAAATACTGATGATGTCAAAGGCTTCAAAGATCGAGATAGTGAGATTGATTTTCGTCATGATAGTGACTATTCATTTCAACCACAGGATCAGAATCTTGCTAAATGTATGGTCGCAACAACTCTGAAGAGGGAAAATCATAGTTGGATGTCTGATATCAATTTTTCACCTGATGAAGATTATATGATGGATAGTGGCTACTCTGCTGCCAAAAGATCCAGTAATTTGGAAGATAATATGTTTACCTCAGCATGGCAAGATCAGCCCTTTAAACTCTGTGCTAGTGTTAGCAAGGTTTCAGCAGATACTGGAGTATCACATCATGATTTCAGTAGCAATGTAGAGGTCACCTGTGATTTAAGACAACCTTTCCTCAATAGTTGTTCCTCCCGAGGAAGGCTTCCATCTGAGAGGGATTTGCTTACAGAGAGTGGGATTAAATGTCAAAATGATTACTTTGGGAGCAAGAGAATGCAGGATGGCTCTTACAACACTTTAGACTTTTCAGAAATTGATGGCAGCAGCAAGAGAATTCGGAGTGGTTCTTATAACAGTGTAGAAGTTCCAGATATCTCTTCAATGACTTCATCCCCAGGGATGGTTTCTAGTGCTCAGCCCTATGCCAGAGTTAGATCAAAGTTTGACCCGTTTGCAGAGTTTGACCCTCTGTCAAGAGCTAATTTGAATTCAATTCCATCCTGTAAGGGCCGTTTAGATGAGGCAAGTTTAGACATAAGTGAAGAGTATATTGGTTCGTGCAACCAGACCTTAAAAACTGAATGGTACTCTGTGACATCCAATCCGTTATCCCAAAGTACCTATTTGGATTTTGAACCTTTCTCTAATGAAGATTCAGTTGAAGGGCATTACAGATATAAATATGATAAGAGGGATACTGACAAATATTTTGTTGATGCTGAAGAATTTGAATGCAGCTTTGGATCGGATATAGTGTCAAATATCAGAGAACACTGCATTACAGATATAGACTGTGGACTAGGTTATAATGACAATGCTGGTTCTAGAAAATTCCTTCACCAAGACAATATAGATAGAGAGTTTTCTAGTGGACGCCGAGGTAAATTAGCTTATGAGACAGACTGGTTAAGCTGGCATTCACGCAGCAAAGATAACATTTGTATTGACATGCATAATAGACATGAGGAGCAGTCAAAATATCGGGATTGTCTCAAGAGTCATGTTTTAAACAGAAGATCGATACGAAGCCACTCAGCTCCACCATTTCCTAGAAGCAAGAGGAAGTACTTCACTTTAAATCATCCTGCGACAACAGCAGGCAAACATGATGCACAAACCTTCCATGATTCAGCTACTTATCCAGAAGCTGGCACAGTGAAGGATCTCTGTCAACCTCGTAATGGTAATCATCAAAATTTGAAGACAACTTCTGTGGAGGATTTATTGTTAGACACCAGACCAGATATTAACGCTGGTGCAAGCAAGATGCAAAAATTGGAAATGTTTGAACAATCTAAAAGGTCTGAGGTTCAAGCCACAGCTCCAATTAAAGAAATTATATCCATGAATCAAGATTCGCTGAATTGTGGGACCAAATGGCGGAATTGTTGTCCCCAAATTATAAGCAAAAGTAAAGTGCACGGTGTTCAAGATGGAAATGATATACTTGACATATCTTCCGGATTCTTGAATCTTGCTGCTGACTCATTAGTTCCTGAATCTCTCCATAAGAACTGTCTCAAGCATTCCAGAGTTCTTCAGCAGGTGGATAAGAAATTTATTCCAGTCATGGCCGGCCAAACACTTGCTGTTATTGACCAGGTCCGTTTCTTGGATATCTTTTTCAAGTTTGAATGGCAAGGGAAGCAATTCACTTCACTTATAGATTACAAGGTTACAATAGAGCTTTCATGCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1068

Amino Acids

120.76

Weight (kDa)

6.04

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	22 - 120	1.4e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	215 - 347	2.5e-12	DNA mismatch repair protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1857, 2313, 2909
AarI	CACCTGC	1 cut(s)	3040
Acc36I	ACCTGC	1 cut(s)	3040
AccB7I	CCANNNNNTGG	1 cut(s)	2654
AccI	GTMKAC	1 cut(s)	895
AccIII	TCCGGA	2 cut(s)	1225, 2966
AciI	CCGC	4 cut(s)	16, 257, 877, 2887
AclWI	GGATC	8 cut(s)	486, 548, 867, 880, 1404, 1518, 2257, 2676
AcoI	YGGCCR	2 cut(s)	3078, 3082
AcsI	RAATTY	9 cut(s)	925, 1147, 1287, 1839, 1993, 2231, 2336, 2701, 3062
AcuI	CTGAAG	3 cut(s)	1454, 2247, 3029
AcyI	GRCGYC	1 cut(s)	2380
AfaI	GTAC	6 cut(s)	534, 610, 1008, 2093, 2125, 2573
AfiI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1704, 1906, 2654, 2687, 2886, 3118
AhdI	GACNNNNNGTC	1 cut(s)	1975
AjiI	CACGTC	3 cut(s)	70, 231, 316
AjnI	CCWGG	3 cut(s)	853, 1900, 3105
AjuI	GAANNNNNNNTTGG	8 cut(s)	494, 526, 636, 668, 2040, 2072, 2229, 2261
Alw21I	GWGCWC	5 cut(s)	41, 93, 555, 1921, 2928
Alw26I	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
Alw44I	GTGCAC	2 cut(s)	551, 2924
AlwI	GGATC	8 cut(s)	486, 548, 867, 880, 1404, 1518, 2257, 2676
AlwNI	CAGNNNCTG	3 cut(s)	866, 1616, 2654
Ama87I	CYCGRG	1 cut(s)	1698
Aor13HI	TCCGGA	2 cut(s)	1225, 2966
AoxI	GGCC	7 cut(s)	353, 756, 828, 1026, 2014, 3078, 3082
ApaLI	GTGCAC	2 cut(s)	551, 2924
ApeKI	GCWGC	9 cut(s)	263, 863, 1257, 1514, 1827, 1830, 2241, 2430, 2984
ApoI	RAATTY	9 cut(s)	925, 1147, 1287, 1839, 1993, 2231, 2336, 2701, 3062
ArsI	GACNNNNNNTTYG	4 cut(s)	1087, 1119, 2198, 2230
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	3 cut(s)	383, 2573, 3155
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	6 cut(s)	800, 850, 1001, 2014, 2877, 3109
AsuHPI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
AsuII	TTCGAA	1 cut(s)	840
AvaI	CYCGRG	1 cut(s)	1698
AvaII	GGWCC	5 cut(s)	800, 850, 1001, 2877, 3109
BaeGI	GKGCMC	2 cut(s)	555, 2928
BaeI	ACNNNNGTAYC	4 cut(s)	1605, 1605, 1638, 1638
BamHI	GGATCC	1 cut(s)	872
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	2 cut(s)	980, 2714
Bbv12I	GWGCWC	5 cut(s)	41, 93, 555, 1921, 2928
BbvCI	CCTCAGC	1 cut(s)	1555
BbvI	GCAGC	9 cut(s)	250, 850, 1269, 1501, 1839, 1842, 2253, 2442, 2971
BceAI	ACGGC	1 cut(s)	2001
BcgI	CGANNNNNNTGC	4 cut(s)	285, 319, 727, 761
BciT130I	CCWGG	3 cut(s)	855, 1902, 3107
BciVI	GTATCC	3 cut(s)	713, 1197, 2194
BcoDI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
BfaI	CTAG	8 cut(s)	75, 834, 1590, 1914, 2306, 2331, 2373, 2556
BfmI	CTRYAG	1 cut(s)	1137
BfuAI	ACCTGC	1 cut(s)	3040
BfuI	GTATCC	3 cut(s)	713, 1197, 2194
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	1 cut(s)	1210
BisI	GCNGC	9 cut(s)	264, 864, 1258, 1515, 1828, 1831, 2242, 2431, 2985
BlpI	GCTNAGC	1 cut(s)	1920
BlsI	GCNGC	9 cut(s)	265, 865, 1259, 1516, 1829, 1832, 2243, 2432, 2986
BmcAI	AGTACT	1 cut(s)	2573
Bme1390I	CCNGG	3 cut(s)	855, 1902, 3107
Bme18I	GGWCC	5 cut(s)	800, 850, 1001, 2877, 3109
BmeRI	GACNNNNNGTC	1 cut(s)	1975
BmeT110I	CYCGRG	1 cut(s)	1698
BmgBI	CACGTC	3 cut(s)	70, 231, 316
BmgT120I	GGNCC	6 cut(s)	800, 850, 1001, 2014, 2877, 3109
BmiI	GGNNCC	6 cut(s)	283, 851, 852, 874, 1002, 2878
BmrFI	CCNGG	3 cut(s)	855, 1902, 3107
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	5 cut(s)	250, 661, 2212, 2605, 2763
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	980, 2714
BpmI	CTGGAG	1 cut(s)	1638
Bpu10I	CCTNAGC	1 cut(s)	1555
Bpu1102I	GCTNAGC	1 cut(s)	1920
Bpu14I	TTCGAA	1 cut(s)	840
BpuEI	CTTGAG	5 cut(s)	31, 885, 1235, 2483, 3011
Bsa29I	ATCGAT	1 cut(s)	2525
BsaBI	GATNNNNATC	2 cut(s)	724, 1401
BsaHI	GRCGYC	1 cut(s)	2380
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	6 cut(s)	853, 854, 1699, 1900, 1901, 2383
BsaWI	WCCGGW	2 cut(s)	1225, 2966
Bsc4I	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1704, 1906, 2654, 2687, 2886, 3118
Bse118I	RCCGGY	1 cut(s)	3080
Bse1I	ACTGG	9 cut(s)	267, 303, 470, 552, 911, 1527, 1621, 2414, 3071
Bse3DI	GCAATG	2 cut(s)	320, 1651
Bse8I	GATNNNNATC	2 cut(s)	724, 1401
BseAI	TCCGGA	2 cut(s)	1225, 2966
BseBI	CCWGG	3 cut(s)	855, 1902, 3107
BseCI	ATCGAT	1 cut(s)	2525
BseDI	CCNNGG	6 cut(s)	853, 854, 1699, 1900, 1901, 2383
BseJI	GATNNNNATC	2 cut(s)	724, 1401
BseLI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1704, 1906, 2654, 2687, 2886, 3118
BseMI	GCAATG	2 cut(s)	320, 1651
BseMII	CTCAG	8 cut(s)	243, 975, 1283, 1569, 1707, 1934, 2553, 2802
BseNI	ACTGG	9 cut(s)	267, 303, 470, 552, 911, 1527, 1621, 2414, 3071
BseRI	GAGGAG	4 cut(s)	19, 101, 1210, 2486
BseSI	GKGCMC	2 cut(s)	555, 2928
BseXI	GCAGC	9 cut(s)	250, 850, 1269, 1501, 1839, 1842, 2253, 2442, 2971
BseYI	CCCAGC	1 cut(s)	846
BshFI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3080, 3084
BshVI	ATCGAT	1 cut(s)	2525
BsiHKAI	GWGCWC	5 cut(s)	41, 93, 555, 1921, 2928
BsiHKCI	CYCGRG	1 cut(s)	1698
BsiSI	CCGG	4 cut(s)	23, 1226, 2967, 3081
BslFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
BslI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1704, 1906, 2654, 2687, 2886, 3118
BsmAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
BsmFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
BsmI	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3031
BsnI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3080, 3084
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	1698
Bsp119I	TTCGAA	1 cut(s)	840
Bsp1286I	GDGCHC	5 cut(s)	41, 93, 555, 1921, 2928
Bsp13I	TCCGGA	2 cut(s)	1225, 2966
Bsp1407I	TGTACA	1 cut(s)	532
Bsp1720I	GCTNAGC	1 cut(s)	1920
BspACI	CCGC	4 cut(s)	16, 257, 877, 2887
BspANI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3080, 3084
BspCNI	CTCAG	8 cut(s)	244, 976, 1282, 1568, 1708, 1933, 2552, 2803
BspDI	ATCGAT	1 cut(s)	2525
BspEI	TCCGGA	2 cut(s)	1225, 2966
BspHI	TCATGA	2 cut(s)	1366, 1630
BspLI	GGNNCC	6 cut(s)	283, 851, 852, 874, 1002, 2878
BspMI	ACCTGC	1 cut(s)	3040
BspPI	GGATC	8 cut(s)	486, 548, 867, 880, 1404, 1518, 2257, 2676
BspT104I	TTCGAA	1 cut(s)	840
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	320, 1651
BsrFI	RCCGGY	1 cut(s)	3080
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	9 cut(s)	267, 303, 470, 552, 911, 1527, 1621, 2414, 3071
BssAI	RCCGGY	1 cut(s)	3080
BssECI	CCNNGG	6 cut(s)	853, 854, 1699, 1900, 1901, 2383
BssNI	GRCGYC	1 cut(s)	2380
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	855, 1902, 3107
Bst4CI	ACNGT	9 cut(s)	439, 520, 786, 1132, 1862, 2300, 2662, 2930, 3023
Bst6I	CTCTTC	4 cut(s)	881, 1430, 1888, 2043
BstACI	GRCGYC	1 cut(s)	2380
BstAUI	TGTACA	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	840
BstC8I	GCNNGC	7 cut(s)	115, 488, 2420, 2605, 2656, 2767, 3082
BstDEI	CTNAG	9 cut(s)	252, 984, 1244, 1269, 1555, 1716, 1920, 2539, 2811
BstEII	GGTNACC	1 cut(s)	1654
BstHHI	GCGC	1 cut(s)	119
BstMAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3029
BstMWI	GCNNNNNNNGC	6 cut(s)	263, 755, 843, 1570, 2600, 3151
BstNI	CCWGG	3 cut(s)	855, 1902, 3107
BstNSI	RCATGY	2 cut(s)	490, 2458
BstPI	GGTNACC	1 cut(s)	1654
BstSCI	CCNGG	3 cut(s)	853, 1900, 3105
BstSFI	CTRYAG	1 cut(s)	1137
BstSLI	GKGCMC	2 cut(s)	555, 2928
BstV1I	GCAGC	9 cut(s)	250, 850, 1269, 1501, 1839, 1842, 2253, 2442, 2971
BstV2I	GAAGAC	2 cut(s)	980, 2714
BstX2I	RGATCY	4 cut(s)	872, 1210, 1523, 2668
BstXI	CCANNNNNNTGG	1 cut(s)	1534
BstYI	RGATCY	4 cut(s)	872, 1210, 1523, 2668
Bsu15I	ATCGAT	1 cut(s)	2525
BsuI	GTATCC	3 cut(s)	713, 1197, 2194
BsuRI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3080, 3084
BsuTUI	ATCGAT	1 cut(s)	2525
BtgZI	GCGATG	1 cut(s)	1275
BtrI	CACGTC	3 cut(s)	70, 231, 316
BtsI	GCAGTG	1 cut(s)	2278
BtsIMutI	CAGTG	8 cut(s)	274, 296, 516, 545, 1128, 1867, 2278, 2667
BveI	ACCTGC	1 cut(s)	3040
Cac8I	GCNNGC	7 cut(s)	115, 488, 2420, 2605, 2656, 2767, 3082
CaiI	CAGNNNCTG	3 cut(s)	866, 1616, 2654
CciI	TCATGA	2 cut(s)	1366, 1630
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	3080
Cfr13I	GGNCC	6 cut(s)	800, 850, 1001, 2014, 2877, 3109
ClaI	ATCGAT	1 cut(s)	2525
CseI	GACGC	2 cut(s)	119, 2388
CsiI	ACCWGGT	1 cut(s)	3105
Csp6I	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
CspCI	CAANNNNNGTGG	2 cut(s)	2700, 2735
CviQI	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
DdeI	CTNAG	9 cut(s)	252, 984, 1244, 1269, 1555, 1716, 1920, 2539, 2811
DraI	TTTAAA	4 cut(s)	957, 1579, 2514, 2583
DriI	GACNNNNNGTC	1 cut(s)	1975
EaeI	YGGCCR	2 cut(s)	3078, 3082
Eam1104I	CTCTTC	4 cut(s)	881, 1430, 1888, 2043
Eam1105I	GACNNNNNGTC	1 cut(s)	1975
EarI	CTCTTC	4 cut(s)	881, 1430, 1888, 2043
EciI	GGCGGA	2 cut(s)	272, 2902
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	4 cut(s)	1056, 1465, 1879, 3124
Eco47I	GGWCC	5 cut(s)	800, 850, 1001, 2877, 3109
Eco53kI	GAGCTC	2 cut(s)	39, 91
Eco57I	CTGAAG	3 cut(s)	1454, 2247, 3029
Eco88I	CYCGRG	1 cut(s)	1698
Eco91I	GGTNACC	1 cut(s)	1654
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoO109I	RGGNCCY	2 cut(s)	850, 1001
EcoO65I	GGTNACC	1 cut(s)	1654
EcoRI	GAATTC	3 cut(s)	1287, 1839, 1993
EcoRII	CCWGG	3 cut(s)	853, 1900, 3105
EcoRV	GATATC	4 cut(s)	1056, 1465, 1879, 3124
EcoT22I	ATGCAT	2 cut(s)	2460, 3203
EcoT38I	GRGCYC	2 cut(s)	41, 93
FalI	AAGNNNNNCTT	2 cut(s)	1660, 1692
FaqI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
FauI	CCCGC	1 cut(s)	884
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	895
Fnu4HI	GCNGC	9 cut(s)	264, 864, 1258, 1515, 1828, 1831, 2242, 2431, 2985
FriOI	GRGCYC	2 cut(s)	41, 93
FseI	GGCCGGCC	1 cut(s)	3084
Fsp4HI	GCNGC	9 cut(s)	264, 864, 1258, 1515, 1828, 1831, 2242, 2431, 2985
FspBI	CTAG	8 cut(s)	75, 834, 1590, 1914, 2306, 2331, 2373, 2556
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	9 cut(s)	264, 864, 1258, 1515, 1828, 1831, 2242, 2431, 2985
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	1 cut(s)	1638
HaeIII	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3080, 3084
HapII	CCGG	4 cut(s)	23, 1226, 2967, 3081
HgaI	GACGC	2 cut(s)	119, 2388
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	2380
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	2678
HindII	GTYRAC	1 cut(s)	2678
HindIII	AAGCTT	2 cut(s)	342, 1036
HpaII	CCGG	4 cut(s)	23, 1226, 2967, 3081
HphI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
Hpy166II	GTNNAC	9 cut(s)	533, 535, 553, 896, 1551, 2303, 2378, 2678, 2926
Hpy8I	GTNNAC	9 cut(s)	533, 535, 553, 896, 1551, 2303, 2378, 2678, 2926
Hpy99I	CGWCG	1 cut(s)	235
HpyCH4III	ACNGT	9 cut(s)	439, 520, 786, 1132, 1862, 2300, 2662, 2930, 3023
HpyCH4IV	ACGT	4 cut(s)	69, 230, 315, 1120
HpyF10VI	GCNNNNNNNGC	6 cut(s)	263, 755, 843, 1570, 2600, 3151
HpyF3I	CTNAG	9 cut(s)	252, 984, 1244, 1269, 1555, 1716, 1920, 2539, 2811
HpySE526I	ACGT	4 cut(s)	69, 230, 315, 1120
Hsp92I	GRCGYC	1 cut(s)	2380
HspAI	GCGC	1 cut(s)	117
KflI	GGGWCCC	1 cut(s)	850
Kpn2I	TCCGGA	2 cut(s)	1225, 2966
KroI	GCCGGC	1 cut(s)	3080
KroNI	GCCGGC	1 cut(s)	3082
Lsp1109I	GCAGC	9 cut(s)	250, 850, 1269, 1501, 1839, 1842, 2253, 2442, 2971
LweI	GCATC	5 cut(s)	250, 661, 2212, 2605, 2763
MabI	ACCWGGT	1 cut(s)	3105
MaeI	CTAG	8 cut(s)	75, 834, 1590, 1914, 2306, 2331, 2373, 2556
MaeII	ACGT	4 cut(s)	69, 230, 315, 1120
MaeIII	GTNAC	7 cut(s)	334, 695, 1121, 1373, 1654, 2098, 3181
MfeI	CAATTG	1 cut(s)	824
MflI	RGATCY	4 cut(s)	872, 1210, 1523, 2668
MhlI	GDGCHC	5 cut(s)	41, 93, 555, 1921, 2928
MlyI	GAGTC	2 cut(s)	2512, 2984
MmeI	TCCRAC	2 cut(s)	850, 1433
Mph1103I	ATGCAT	2 cut(s)	2460, 3203
MroI	TCCGGA	2 cut(s)	1225, 2966
MroNI	GCCGGC	1 cut(s)	3080
MroXI	GAANNNNTTC	3 cut(s)	383, 2573, 3155
MslI	CAYNNNNRTG	1 cut(s)	1371
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	4 cut(s)	23, 1226, 2967, 3081
MspR9I	CCNGG	3 cut(s)	855, 1902, 3107
MunI	CAATTG	1 cut(s)	824
Mva1269I	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3031
MvaI	CCWGG	3 cut(s)	855, 1902, 3107
MwoI	GCNNNNNNNGC	6 cut(s)	263, 755, 843, 1570, 2600, 3151
NaeI	GCCGGC	1 cut(s)	3082
NdeI	CATATG	1 cut(s)	979
NgoMIV	GCCGGC	1 cut(s)	3080
NlaIV	GGNNCC	6 cut(s)	283, 851, 852, 874, 1002, 2878
NmeAIII	GCCGAG	1 cut(s)	2408
NmuCI	GTSAC	5 cut(s)	695, 1121, 1373, 1654, 2098
NsiI	ATGCAT	2 cut(s)	2460, 3203
NspI	RCATGY	2 cut(s)	490, 2458
NspV	TTCGAA	1 cut(s)	840
PaeI	GCATGC	1 cut(s)	490
PagI	TCATGA	2 cut(s)	1366, 1630
PaqCI	CACCTGC	1 cut(s)	3040
PasI	CCCWGGG	2 cut(s)	854, 1901
PctI	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3031
PdiI	GCCGGC	1 cut(s)	3082
PdmI	GAANNNNTTC	3 cut(s)	383, 2573, 3155
PflFI	GACNNNGTC	2 cut(s)	518, 3107
PflMI	CCANNNNNTGG	1 cut(s)	2654
PkrI	GCNGC	9 cut(s)	265, 865, 1259, 1516, 1829, 1832, 2243, 2432, 2986
PleI	GAGTC	2 cut(s)	2511, 2984
PpsI	GAGTC	2 cut(s)	2511, 2984
PpuMI	RGGWCCY	2 cut(s)	850, 1001
PshBI	ATTAAT	1 cut(s)	777
PsiI	TTATAA	3 cut(s)	1857, 2313, 2909
Psp124BI	GAGCTC	2 cut(s)	41, 93
Psp5II	RGGWCCY	2 cut(s)	850, 1001
Psp6I	CCWGG	3 cut(s)	853, 1900, 3105
PspEI	GGTNACC	1 cut(s)	1654
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	3 cut(s)	853, 1900, 3105
PspN4I	GGNNCC	6 cut(s)	283, 851, 852, 874, 1002, 2878
PspPI	GGNCC	6 cut(s)	800, 850, 1001, 2014, 2877, 3109
PspPPI	RGGWCCY	2 cut(s)	850, 1001
PstNI	CAGNNNCTG	3 cut(s)	866, 1616, 2654
PsuI	RGATCY	4 cut(s)	872, 1210, 1523, 2668
PsyI	GACNNNGTC	2 cut(s)	518, 3107
PvuII	CAGCTG	1 cut(s)	863
RigI	GGCCGGCC	1 cut(s)	3084
RsaI	GTAC	6 cut(s)	534, 610, 1008, 2093, 2125, 2573
RsaNI	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
RseI	CAYNNNNRTG	1 cut(s)	1371
SacI	GAGCTC	2 cut(s)	41, 93
SatI	GCNGC	9 cut(s)	264, 864, 1258, 1515, 1828, 1831, 2242, 2431, 2985
Sau96I	GGNCC	6 cut(s)	800, 850, 1001, 2014, 2877, 3109
ScaI	AGTACT	1 cut(s)	2573
SchI	GAGTC	2 cut(s)	2512, 2984
ScrFI	CCNGG	3 cut(s)	855, 1902, 3107
SduI	GDGCHC	5 cut(s)	41, 93, 555, 1921, 2928
SexAI	ACCWGGT	1 cut(s)	3105
SfaNI	GCATC	5 cut(s)	250, 661, 2212, 2605, 2763
SfcI	CTRYAG	1 cut(s)	1137
SfuI	TTCGAA	1 cut(s)	840
SinI	GGWCC	5 cut(s)	800, 850, 1001, 2877, 3109
SmiMI	CAYNNNNRTG	1 cut(s)	1371
SmlI	CTYRAG	5 cut(s)	10, 900, 1214, 2498, 3026
SmoI	CTYRAG	5 cut(s)	10, 900, 1214, 2498, 3026
SphI	GCATGC	1 cut(s)	490
SsiI	CCGC	4 cut(s)	16, 257, 877, 2887
SspI	AATATT	2 cut(s)	767, 2213
SspMI	CTAG	8 cut(s)	75, 834, 1590, 1914, 2306, 2331, 2373, 2556
SstI	GAGCTC	2 cut(s)	41, 93
StyD4I	CCNGG	3 cut(s)	853, 1900, 3105
TaaI	ACNGT	9 cut(s)	439, 520, 786, 1132, 1862, 2300, 2662, 2930, 3023
TaiI	ACGT	4 cut(s)	72, 233, 318, 1123
TaqI	TCGA	8 cut(s)	41, 233, 305, 579, 840, 971, 1342, 2525
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	3 cut(s)	532, 1006, 2571
TscAI	CASTG	8 cut(s)	274, 303, 523, 552, 1135, 1867, 2285, 2667
TseFI	GTSAC	5 cut(s)	695, 1121, 1373, 1654, 2098
TseI	GCWGC	9 cut(s)	263, 863, 1257, 1514, 1827, 1830, 2241, 2430, 2984
Tsp45I	GTSAC	5 cut(s)	695, 1121, 1373, 1654, 2098
TspGWI	ACGGA	3 cut(s)	714, 2100, 3101
TspRI	CASTG	8 cut(s)	274, 303, 523, 552, 1135, 1867, 2285, 2667
Tth111I	GACNNNGTC	2 cut(s)	518, 3107
Van91I	CCANNNNNTGG	1 cut(s)	2654
VneI	GTGCAC	2 cut(s)	551, 2924
VpaK11BI	GGWCC	5 cut(s)	800, 850, 1001, 2877, 3109
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	9 cut(s)	925, 1147, 1287, 1839, 1993, 2231, 2336, 2701, 3062
XbaI	TCTAGA	1 cut(s)	2330
XceI	RCATGY	2 cut(s)	490, 2458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	895
XmnI	GAANNNNTTC	3 cut(s)	383, 2573, 3155
XspI	CTAG	8 cut(s)	75, 834, 1590, 1914, 2306, 2331, 2373, 2556
ZrmI	AGTACT	1 cut(s)	2573
Zsp2I	ATGCAT	2 cut(s)	2460, 3203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.