Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Reverse (-)

82848414 .. 82855947

Gene Structure 7534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3765 bp

ATGAGGAGCTTGAGGAGGTTGCCGGAGGCAGTTCGGAGCTCGATTCGGTCTGGGGTGATTCTGTATGACGTGGCTAGGGTTGTGGAGGAGCTCGTCTTTAATAGCTTGGACGCTGGCGCAAGAAAGGTGTCAGTTTTCGTAGGAATTGGGACTTGTTATGTGAAAGTAGTTGATGATGGATGTGGGATTACTCGTGATGGATTGGTGTTGTTGGGAGAAAGATATGCCACGTCGAAGTTTGAACAATTTACTGAGGCGGATGCTGCAAGTGTGAGCTTTGGTTCCAGAGGGGAAGCACTGGCTTCGATTTCTGACGTGGCATTGCTTGAAGTTGTAACCAAAGCTTCTGGGAGGCCAAATGGGTATCGCAAAGTGATGAAGGGATTCAAATGTTTGTATCTTGGGGTAGATGACGATAGGAAGGATGTCGGCACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGAAGGAAGTGCATGCAATCCAGCCCGAAGAAGGTATTGGACACTGTCAAGAAATGTGTACACAGGATAGCACTGGTGCACTCAGTGGTTTCCTTCAAAGTTGTCGATATGGAGAGTGAGGATGAGCTTCTTCGTACCATTCCTTCTCCTTCTCCCATGACATTATTGGAAAGTGCTTTTGGGAGCGAGGTCTCTGATGCACTTCATGAATTGAACATAAGTGATGGCAAATTAGAGCTTTCTGGATACATATCTACTCCTTGCAATAGTCTCGCCATTAAGGCCATCCAATATTTCTATATTAATTCACGGTTCATTTGCAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACAGCTGTTGTTGGATCCCGCAACAGGAAGAGAAGTAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAAGTTGTCCCCAATCATTCTATGATTTAAACTTTGAACCATCGAAGACATATGCTGAGTTCAAGGATTGGGGTCCTGTACTCAACTTTATTGATAAGGCCATTCAAAGCTTCTGGAAGGAAAAGATATCCTATGTGGAATCTGTTTGTCATGGAGCTGATATACGAAGAGAAGGTCAACTGTGGGAGGAATGTGACAACACTGTATCTGTAGATGAAAATTTGCTGGATGTAGATTTGTCAGAAATGTCTCCAATAAGGAAAAAGAGGAGCAGGATACAAGATCTTGAGACTTCTCCTGACATTATGAAGATTCTAAGTAAAGAGGGCAGCAATGTATCTCAGAGGAAATATGTCAGAATTCCATTTGACTACTTGCATGAAAATACTGACGATGTCAAAGGTTTCAAAGATCGAGATAGTGAGATTGATTTTCGTCATGATACTGACTATTCATTTCAACCACGGGATCAGAATCTTGCTAAATGTATGGTCGCAACAACTCTGAAGAGGGAAAATCATAGTTGGATGTCTGATATCAATTTTTCACCTGATGAAGATTATATGATGGATAGTGGCTACTCTGCTGCCAAAAGATCCAGTAATTTGGAAGATAATATGTTTATCTCAGCATGGCAAGATCAGCCCTTTAAACTCTGTACTAGTGTTAGCAAGGGTTCAGCAGATACTGGAGTATCACATCATGATTTCAGTAGCGATGTAGAGGTCACCTGTGATTTAAGACAACCTTTCCTCAATAGTTGTTCCTCCCGAGGAAGGATTCCATCTGAGAGGGATTTGCTTACAGAAAGTGGGATTAAATGTCAAAATGATTACTTTGGGAGCAAGAGAATGCAGGATGGCTCTTACAACACTGTAGACTTTTCAGAAATTGATGGCAGCAGCAAGAGAATTCAGAGTGGTTCTTATAACAGTGTAGAAGTTCCAGATATCTCGTCAATGACTTCATCCCCAGGGATGGTTTCTAGTGCTCAGCCCTATCCCAGAGTTAGATCAAAGTTTGACCCATTTGCAGAGTTTGACCCTCTGTCAAGAGCTAATTTGAATTCAATTCCATCCTGTAAGGGCCGTTTAGATGAGGCAAGTTTAGACATGAGTGAAGAGTATATTGGTTTGTGCAATCAGACCTTAAAAACTGAATGGTACTCTGTGACATCTAATCCGTTATCCCAAAGTACCTATTTGGATTTTGAACCTTTCTCTAATGAAGATTCAGTTGAAGGGCATTACAGATATAAATATGATAAGAGGGATACTGACAAATATTTTGTTGGTGCTGAAGAATTTGAATGCAGCTTTGGATTGGATATAGCGTCAAAGATCAGAGAACACTGCATTACAGATATAGACTGTGGACTAGGTTATAATGACAATGCTGGTTCTAGAAAATTCCTTCACCAAGACAATATAGATAGAGAGTTTTCTACTGGACGCCGAGGTAAATTAGCTTATGAGACAGATTGGTTAAGTTGGCATTCACGCAGCAAAGATAACATTTGTATTGACATGCATAATAGACATGAGGAGCAGTCAAAATATCAGGATTGTCTCAAGAGTCGTGTTTTAAACAGAACGATACGAAGCCACTCAGCTCCACCATTTCCTAGAAGCAAGAGGAAGTACTTCACTTTAAATCATCCTGCGACAACAGCAGGCAAACATGATGCACAAACCTTCCATGATTCAGCTACTTATCCAGAAGCTGACACAGTGAAGGATCTCTGTCAACCTCCTAATGGTAGTCATCAAAATTTGAAGACAACTTCTGTGGAGGATTTATTCTTAGACACCAGACCAGATATTAACGCTGGTGCAAGCAAGATGCAAAAATTGGAAATGTTTGAACAATCTAAAAGGTCTGAGGTTCAAGCCACAGCTCCAATTAAAGAAATTATATCCATGAATCAAGATTCGCTGAATTGCGGGACCAAATGGCGGAATTGTTGTCCCCCAATTACAAGCACAAGTAAAATGCACCGTGTTCAAGATGGAAATGATATACTTGACATATCTTCCGGATTCTTGCATCTTGCTGCTGACTCATTAGTTCCTGAATCTCTCAATAAGAACTGTCTCAAGCATTCCAGAGTTCTTCAGCAGGCGGATAAGAAATTTATTCCAGTCATGGCCGGCCAAACACTTGTTGTTATTGACCAGCATGCTGCAGATGAAAGGATCCGATTGGAGGAGCTGCGTCACAAGGTTTTGTCTGGAGATGGAGAAGCAAAGACCATTACTTTTCTGGATTTTGAACAAGAGCTGGTGCTGCCAGAGATTGGTTACCAGTTACTGCATAACTATGCTAAAACAATAGAAGAGTGGGGTTGGCGCTGCAACATACATGCTCAAGATTCAGGGTCTTTCAAGAGGAATTTGAATATCCTTCACAGGCAGCCAACCGTCATCACACTTATTGCGGTTCCCTGCATCTTAGGTGTCAATTTATCTGATGTAGATCTTATGGAATTTCTTCAGCAGCTTTCTGATACAGATGGATCATCAACAATGCCACCATCTGTTCTTCGAATCCTAAATTCTAAAGCATGTAGAGGTGCAATTATGTTTGGGGATTCCTTGCTACCTTCAGAGTGTTCCCTCATCGTTGATGAGCTAAAGCAGACCTCGTTGTGTTTCCAATGTGCTCATGGTCGACCAACAACTGCCCCACTAGTAAATTTGGAAGCGTTGCACAAGCAAATAGCTAAGATTGCATCTTTGAATCTGAACAATGGTGCAGATCAGGTGTGGCATGGGTTACATCAACATGAGCTTAGTCTTGCACGTGCAGAACAACGTTTAAACTCGGCTAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1254

Amino Acids

141.18

Weight (kDa)

5.91

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	22 - 120	1.7e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	215 - 347	3.2e-12	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	1015 - 1175	4.2e-09	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1857, 2313
AccB7I	CCANNNNNTGG	1 cut(s)	3224
AccI	GTMKAC	3 cut(s)	895, 1806, 3598
AccIII	TCCGGA	1 cut(s)	2963
AciI	CCGC	6 cut(s)	257, 877, 2871, 2884, 3050, 3365
AclI	AACGTT	1 cut(s)	3742
AclWI	GGATC	8 cut(s)	867, 880, 1404, 1518, 2673, 3118, 3131, 3451
AcoI	YGGCCR	2 cut(s)	3075, 3079
AcuI	CTGAAG	5 cut(s)	1454, 2247, 3026, 3404, 3516
AcvI	CACGTG	1 cut(s)	3731
AcyI	GRCGYC	1 cut(s)	2380
AdeI	CACNNNGTG	1 cut(s)	559
AfaI	GTAC	7 cut(s)	534, 610, 1008, 1588, 2093, 2125, 2570
AfiI	CCNNNNNNNGG	8 cut(s)	505, 882, 1704, 1906, 2684, 2883, 3133, 3224
AhdI	GACNNNNNGTC	1 cut(s)	1975
AhlI	ACTAGT	2 cut(s)	1589, 3616
AjiI	CACGTC	3 cut(s)	70, 231, 316
AjnI	CCWGG	2 cut(s)	853, 1900
AjuI	GAANNNNNNNTTGG	8 cut(s)	494, 526, 636, 668, 2040, 2072, 2229, 2261
Alw21I	GWGCWC	5 cut(s)	41, 93, 555, 1921, 3592
Alw26I	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3026
Alw44I	GTGCAC	1 cut(s)	551
AlwI	GGATC	8 cut(s)	867, 880, 1404, 1518, 2673, 3118, 3131, 3451
AlwNI	CAGNNNCTG	3 cut(s)	1616, 2651, 3238
Ama87I	CYCGRG	1 cut(s)	1698
Aor13HI	TCCGGA	1 cut(s)	2963
AoxI	GGCC	7 cut(s)	353, 756, 828, 1026, 2014, 3075, 3079
ApaLI	GTGCAC	1 cut(s)	551
ArsI	GACNNNNNNTTYG	4 cut(s)	1087, 1119, 2198, 2230
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	3 cut(s)	383, 2570, 3417
AspLEI	GCGC	2 cut(s)	119, 3279
AspS9I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2874
AsuHPI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
AsuII	TTCGAA	3 cut(s)	475, 840, 3472
AvaI	CYCGRG	1 cut(s)	1698
AvaII	GGWCC	4 cut(s)	800, 850, 1001, 2874
BaeGI	GKGCMC	1 cut(s)	555
BaeI	ACNNNNGTAYC	4 cut(s)	1605, 1605, 1638, 1638
BamHI	GGATCC	2 cut(s)	872, 3123
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	3731
BbsI	GAAGAC	2 cut(s)	980, 2711
Bbv12I	GWGCWC	5 cut(s)	41, 93, 555, 1921, 3592
BceAI	ACGGC	1 cut(s)	2001
BcgI	CGANNNNNNTGC	6 cut(s)	285, 319, 465, 499, 727, 761
BciT130I	CCWGG	2 cut(s)	855, 1902
BciVI	GTATCC	3 cut(s)	713, 1197, 2194
BcoDI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3026
BcuI	ACTAGT	2 cut(s)	1589, 3616
BfmI	CTRYAG	3 cut(s)	1137, 1803, 3111
BfoI	RGCGCY	1 cut(s)	3280
BfuI	GTATCC	3 cut(s)	713, 1197, 2194
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	2 cut(s)	1210, 3403
BlpI	GCTNAGC	1 cut(s)	1920
BmcAI	AGTACT	1 cut(s)	2570
Bme1390I	CCNGG	2 cut(s)	855, 1902
Bme18I	GGWCC	4 cut(s)	800, 850, 1001, 2874
BmeRI	GACNNNNNGTC	1 cut(s)	1975
BmeT110I	CYCGRG	1 cut(s)	1698
BmgBI	CACGTC	3 cut(s)	70, 231, 316
BmgT120I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2874
BmiI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
BmrFI	CCNGG	2 cut(s)	855, 1902
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	7 cut(s)	250, 661, 2602, 2760, 2983, 3384, 3668
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	980, 2711
BpmI	CTGGAG	2 cut(s)	1638, 3180
Bpu1102I	GCTNAGC	1 cut(s)	1920
Bpu14I	TTCGAA	3 cut(s)	475, 840, 3472
BpuEI	CTTGAG	6 cut(s)	31, 885, 1235, 2483, 3008, 3279
BsaAI	YACGTR	1 cut(s)	3731
BsaBI	GATNNNNATC	3 cut(s)	724, 1401, 3402
BsaHI	GRCGYC	1 cut(s)	2380
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BsaWI	WCCGGW	1 cut(s)	2963
Bsc4I	CCNNNNNNNGG	8 cut(s)	505, 882, 1704, 1906, 2684, 2883, 3133, 3224
Bse118I	RCCGGY	1 cut(s)	3077
Bse1I	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1621, 2380, 3068, 3232
Bse3DI	GCAATG	2 cut(s)	320, 1267
Bse8I	GATNNNNATC	3 cut(s)	724, 1401, 3402
BseAI	TCCGGA	1 cut(s)	2963
BseBI	CCWGG	2 cut(s)	855, 1902
BseDI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BseJI	GATNNNNATC	3 cut(s)	724, 1401, 3402
BseLI	CCNNNNNNNGG	8 cut(s)	505, 882, 1704, 1906, 2684, 2883, 3133, 3224
BseMI	GCAATG	2 cut(s)	320, 1267
BseMII	CTCAG	9 cut(s)	243, 570, 975, 1283, 1569, 1707, 1934, 2550, 2799
BseNI	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1621, 2380, 3068, 3232
BseRI	GAGGAG	6 cut(s)	19, 28, 101, 1210, 2486, 3149
BseSI	GKGCMC	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	846
BsgI	GTGCAG	2 cut(s)	3702, 3753
BshFI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3077, 3081
BsiHKAI	GWGCWC	5 cut(s)	41, 93, 555, 1921, 3592
BsiHKCI	CYCGRG	1 cut(s)	1698
BsiSI	CCGG	3 cut(s)	23, 2964, 3078
BslFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2880, 2887
BslI	CCNNNNNNNGG	8 cut(s)	505, 882, 1704, 1906, 2684, 2883, 3133, 3224
BsmAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3026
BsmFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2880, 2887
BsmI	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3028
BsnI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3077, 3081
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	1698
Bsp119I	TTCGAA	3 cut(s)	475, 840, 3472
Bsp1286I	GDGCHC	5 cut(s)	41, 93, 555, 1921, 3592
Bsp13I	TCCGGA	1 cut(s)	2963
Bsp1407I	TGTACA	1 cut(s)	532
Bsp1720I	GCTNAGC	1 cut(s)	1920
BspACI	CCGC	6 cut(s)	257, 877, 2871, 2884, 3050, 3365
BspANI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3077, 3081
BspCNI	CTCAG	9 cut(s)	244, 569, 976, 1282, 1568, 1708, 1933, 2549, 2800
BspEI	TCCGGA	1 cut(s)	2963
BspHI	TCATGA	3 cut(s)	679, 1366, 1630
BspLI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
BspMAI	CTGCAG	1 cut(s)	3115
BspPI	GGATC	8 cut(s)	867, 880, 1404, 1518, 2673, 3118, 3131, 3451
BspT104I	TTCGAA	3 cut(s)	475, 840, 3472
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	320, 1267
BsrFI	RCCGGY	1 cut(s)	3077
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1621, 2380, 3068, 3232
BssAI	RCCGGY	1 cut(s)	3077
BssECI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BssNI	GRCGYC	1 cut(s)	2380
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	855, 1902
Bst6I	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3258
BstACI	GRCGYC	1 cut(s)	2380
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	3731
BstBI	TTCGAA	3 cut(s)	475, 840, 3472
BstC8I	GCNNGC	7 cut(s)	115, 488, 2602, 2764, 3048, 3079, 3108
BstDSI	CCRYGG	1 cut(s)	1391
BstEII	GGTNACC	2 cut(s)	1654, 3227
BstH2I	RGCGCY	1 cut(s)	3280
BstHHI	GCGC	2 cut(s)	119, 3279
BstMAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2396, 2501, 3026
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 755, 843, 1570, 2597, 3214, 3656
BstNI	CCWGG	2 cut(s)	855, 1902
BstNSI	RCATGY	5 cut(s)	490, 2458, 3110, 3293, 3495
BstPI	GGTNACC	2 cut(s)	1654, 3227
BstSCI	CCNGG	2 cut(s)	853, 1900
BstSFI	CTRYAG	3 cut(s)	1137, 1803, 3111
BstSLI	GKGCMC	1 cut(s)	555
BstV2I	GAAGAC	2 cut(s)	980, 2711
BstX2I	RGATCY	6 cut(s)	872, 1210, 1523, 2665, 3123, 3403
BstXI	CCANNNNNNTGG	1 cut(s)	1534
BstYI	RGATCY	6 cut(s)	872, 1210, 1523, 2665, 3123, 3403
BsuI	GTATCC	3 cut(s)	713, 1197, 2194
BsuRI	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3077, 3081
BtgI	CCRYGG	1 cut(s)	1391
BtgZI	GCGATG	1 cut(s)	1659
BtrI	CACGTC	3 cut(s)	70, 231, 316
BtsI	GCAGTG	1 cut(s)	2278
BtsIMutI	CAGTG	9 cut(s)	296, 516, 545, 564, 1128, 1800, 1867, 2278, 2664
Cac8I	GCNNGC	7 cut(s)	115, 488, 2602, 2764, 3048, 3079, 3108
CaiI	CAGNNNCTG	3 cut(s)	1616, 2651, 3238
CciI	TCATGA	3 cut(s)	679, 1366, 1630
CfoI	GCGC	2 cut(s)	119, 3279
Cfr10I	RCCGGY	1 cut(s)	3077
Cfr13I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2874
CseI	GACGC	4 cut(s)	119, 2250, 2388, 3131
Csp6I	GTAC	7 cut(s)	533, 609, 1007, 1587, 2092, 2124, 2569
CspCI	CAANNNNNGTGG	2 cut(s)	2697, 2732
CviQI	GTAC	7 cut(s)	533, 609, 1007, 1587, 2092, 2124, 2569
DraI	TTTAAA	5 cut(s)	957, 1579, 2514, 2580, 3747
DraIII	CACNNNGTG	1 cut(s)	559
DriI	GACNNNNNGTC	1 cut(s)	1975
EaeI	YGGCCR	2 cut(s)	3075, 3079
Eam1104I	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3258
Eam1105I	GACNNNNNGTC	1 cut(s)	1975
EarI	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3258
EciI	GGCGGA	3 cut(s)	272, 2899, 3065
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	3 cut(s)	1056, 1465, 1879
Eco47I	GGWCC	4 cut(s)	800, 850, 1001, 2874
Eco53kI	GAGCTC	2 cut(s)	39, 91
Eco57I	CTGAAG	5 cut(s)	1454, 2247, 3026, 3404, 3516
Eco72I	CACGTG	1 cut(s)	3731
Eco88I	CYCGRG	1 cut(s)	1698
Eco91I	GGTNACC	2 cut(s)	1654, 3227
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoO109I	RGGNCCY	2 cut(s)	850, 1001
EcoO65I	GGTNACC	2 cut(s)	1654, 3227
EcoRI	GAATTC	3 cut(s)	1287, 1839, 1993
EcoRII	CCWGG	2 cut(s)	853, 1900
EcoRV	GATATC	3 cut(s)	1056, 1465, 1879
EcoT22I	ATGCAT	1 cut(s)	2460
EcoT38I	GRGCYC	2 cut(s)	41, 93
FalI	AAGNNNNNCTT	2 cut(s)	1660, 1692
FaqI	GGGAC	6 cut(s)	163, 863, 871, 921, 2880, 2887
FauI	CCCGC	2 cut(s)	884, 2864
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	3 cut(s)	895, 1806, 3598
FriOI	GRGCYC	2 cut(s)	41, 93
FseI	GGCCGGCC	1 cut(s)	3081
GlaI	GCGC	2 cut(s)	118, 3278
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	2 cut(s)	1638, 3180
HaeII	RGCGCY	1 cut(s)	3280
HaeIII	GGCC	7 cut(s)	355, 758, 830, 1028, 2016, 3077, 3081
HapII	CCGG	3 cut(s)	23, 2964, 3078
HgaI	GACGC	4 cut(s)	119, 2250, 2388, 3131
HhaI	GCGC	2 cut(s)	119, 3279
Hin1I	GRCGYC	1 cut(s)	2380
Hin6I	GCGC	2 cut(s)	117, 3277
HinP1I	GCGC	2 cut(s)	117, 3277
HincII	GTYRAC	3 cut(s)	1106, 2675, 3599
HindII	GTYRAC	3 cut(s)	1106, 2675, 3599
HindIII	AAGCTT	2 cut(s)	342, 1036
HpaII	CCGG	3 cut(s)	23, 2964, 3078
HphI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
Hpy166II	GTNNAC	9 cut(s)	533, 535, 553, 896, 1106, 1807, 2303, 2675, 3599
Hpy8I	GTNNAC	9 cut(s)	533, 535, 553, 896, 1106, 1807, 2303, 2675, 3599
Hpy99I	CGWCG	1 cut(s)	235
HpyCH4IV	ACGT	5 cut(s)	69, 230, 315, 3730, 3742
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 755, 843, 1570, 2597, 3214, 3656
HpySE526I	ACGT	5 cut(s)	69, 230, 315, 3730, 3742
Hsp92I	GRCGYC	1 cut(s)	2380
HspAI	GCGC	2 cut(s)	117, 3277
KflI	GGGWCCC	1 cut(s)	850
Kpn2I	TCCGGA	1 cut(s)	2963
KroI	GCCGGC	1 cut(s)	3077
KroNI	GCCGGC	1 cut(s)	3079
LweI	GCATC	7 cut(s)	250, 661, 2602, 2760, 2983, 3384, 3668
MaeII	ACGT	5 cut(s)	69, 230, 315, 3730, 3742
MaeIII	GTNAC	8 cut(s)	334, 1121, 1654, 2098, 3143, 3227, 3234, 3702
MfeI	CAATTG	1 cut(s)	824
MflI	RGATCY	6 cut(s)	872, 1210, 1523, 2665, 3123, 3403
MhlI	GDGCHC	5 cut(s)	41, 93, 555, 1921, 3592
MlyI	GAGTC	2 cut(s)	2512, 2981
MmeI	TCCRAC	2 cut(s)	850, 1433
Mph1103I	ATGCAT	1 cut(s)	2460
MroI	TCCGGA	1 cut(s)	2963
MroNI	GCCGGC	1 cut(s)	3077
MroXI	GAANNNNTTC	3 cut(s)	383, 2570, 3417
MslI	CAYNNNNRTG	2 cut(s)	3246, 3711
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	3 cut(s)	23, 2964, 3078
MspR9I	CCNGG	2 cut(s)	855, 1902
MssI	GTTTAAAC	1 cut(s)	3747
MunI	CAATTG	1 cut(s)	824
Mva1269I	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3028
MvaI	CCWGG	2 cut(s)	855, 1902
MwoI	GCNNNNNNNGC	7 cut(s)	263, 755, 843, 1570, 2597, 3214, 3656
NaeI	GCCGGC	1 cut(s)	3079
NdeI	CATATG	1 cut(s)	979
NgoMIV	GCCGGC	1 cut(s)	3077
NlaIV	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
NmeAIII	GCCGAG	2 cut(s)	2408, 3731
NmuCI	GTSAC	4 cut(s)	1121, 1654, 2098, 3143
NsiI	ATGCAT	1 cut(s)	2460
NspI	RCATGY	5 cut(s)	490, 2458, 3110, 3293, 3495
NspV	TTCGAA	3 cut(s)	475, 840, 3472
PaeI	GCATGC	2 cut(s)	490, 3110
PagI	TCATGA	3 cut(s)	679, 1366, 1630
PasI	CCCWGGG	2 cut(s)	854, 1901
PctI	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3028
PdiI	GCCGGC	1 cut(s)	3079
PdmI	GAANNNNTTC	3 cut(s)	383, 2570, 3417
PflFI	GACNNNGTC	2 cut(s)	518, 1322
PflMI	CCANNNNNTGG	1 cut(s)	3224
PleI	GAGTC	2 cut(s)	2511, 2981
PmaCI	CACGTG	1 cut(s)	3731
PmeI	GTTTAAAC	1 cut(s)	3747
PmlI	CACGTG	1 cut(s)	3731
PpsI	GAGTC	2 cut(s)	2511, 2981
Ppu21I	YACGTR	1 cut(s)	3731
PpuMI	RGGWCCY	2 cut(s)	850, 1001
PshBI	ATTAAT	1 cut(s)	777
PsiI	TTATAA	2 cut(s)	1857, 2313
Psp124BI	GAGCTC	2 cut(s)	41, 93
Psp1406I	AACGTT	1 cut(s)	3742
Psp5II	RGGWCCY	2 cut(s)	850, 1001
Psp6I	CCWGG	2 cut(s)	853, 1900
PspCI	CACGTG	1 cut(s)	3731
PspEI	GGTNACC	2 cut(s)	1654, 3227
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	2 cut(s)	853, 1900
PspN4I	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2875, 3125, 3369
PspPI	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2874
PspPPI	RGGWCCY	2 cut(s)	850, 1001
PstI	CTGCAG	1 cut(s)	3115
PstNI	CAGNNNCTG	3 cut(s)	1616, 2651, 3238
PsuI	RGATCY	6 cut(s)	872, 1210, 1523, 2665, 3123, 3403
PsyI	GACNNNGTC	2 cut(s)	518, 1322
PvuII	CAGCTG	1 cut(s)	863
RigI	GGCCGGCC	1 cut(s)	3081
RsaI	GTAC	7 cut(s)	534, 610, 1008, 1588, 2093, 2125, 2570
RsaNI	GTAC	7 cut(s)	533, 609, 1007, 1587, 2092, 2124, 2569
RseI	CAYNNNNRTG	2 cut(s)	3246, 3711
SacI	GAGCTC	2 cut(s)	41, 93
SalI	GTCGAC	1 cut(s)	3597
Sau96I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2874
ScaI	AGTACT	1 cut(s)	2570
SchI	GAGTC	2 cut(s)	2512, 2981
ScrFI	CCNGG	2 cut(s)	855, 1902
SduI	GDGCHC	5 cut(s)	41, 93, 555, 1921, 3592
SfaNI	GCATC	7 cut(s)	250, 661, 2602, 2760, 2983, 3384, 3668
SfcI	CTRYAG	3 cut(s)	1137, 1803, 3111
SfuI	TTCGAA	3 cut(s)	475, 840, 3472
SinI	GGWCC	4 cut(s)	800, 850, 1001, 2874
SmiMI	CAYNNNNRTG	2 cut(s)	3246, 3711
SmlI	CTYRAG	6 cut(s)	10, 900, 1214, 2498, 3023, 3294
SmoI	CTYRAG	6 cut(s)	10, 900, 1214, 2498, 3023, 3294
SpeI	ACTAGT	2 cut(s)	1589, 3616
SphI	GCATGC	2 cut(s)	490, 3110
SsiI	CCGC	6 cut(s)	257, 877, 2871, 2884, 3050, 3365
SspI	AATATT	2 cut(s)	767, 2213
SstI	GAGCTC	2 cut(s)	41, 93
StyD4I	CCNGG	2 cut(s)	853, 1900
TaiI	ACGT	5 cut(s)	72, 233, 318, 3733, 3745
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	4 cut(s)	532, 1006, 1586, 2568
TscAI	CASTG	9 cut(s)	303, 523, 552, 564, 1135, 1807, 1867, 2285, 2664
TseFI	GTSAC	4 cut(s)	1121, 1654, 2098, 3143
Tsp45I	GTSAC	4 cut(s)	1121, 1654, 2098, 3143
TspGWI	ACGGA	1 cut(s)	2100
TspRI	CASTG	9 cut(s)	303, 523, 552, 564, 1135, 1807, 1867, 2285, 2664
Tth111I	GACNNNGTC	2 cut(s)	518, 1322
Van91I	CCANNNNNTGG	1 cut(s)	3224
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	4 cut(s)	800, 850, 1001, 2874
VspI	ATTAAT	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	2330
XceI	RCATGY	5 cut(s)	490, 2458, 3110, 3293, 3495
XcmI	CCANNNNNNNNNTGG	3 cut(s)	637, 3187, 3590
XmiI	GTMKAC	3 cut(s)	895, 1806, 3598
XmnI	GAANNNNTTC	3 cut(s)	383, 2570, 3417
ZrmI	AGTACT	1 cut(s)	2570
Zsp2I	ATGCAT	1 cut(s)	2460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.