Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

9247868 .. 9254812

Gene Structure 6945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGACATTATTGGAAAGTGCTTTTGGGAGCGAGGTCTCTGATGCACTTCACAAATTGAACATAAGTGATGGCAAATTAGAGCTTTCTGGATACATGTCTACTCCTTGCAATAGTCTCGCCATTAAGGCCATCCAATATTTCTATATTAATTCACGGTTCATTTGCAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACACCTGTTGTTGGATCCCGCGACAGGAAGAGAAGTAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAATTTGTCCCCAATCATTCTATGATTTAAACTTTGAACCATCGAAGACATATGCTGAGTTCAAGGATTGGGGTCCTGTACTCAACTTTATTGATAAGGCCATTCAAAGCTTCTGGAAGGAAAAGATATCCTATGAATCTGTTTGTCATGGAGCTGATATACGAACAGAAGGTCAAATGTGGGAGGAACGTGACAACACTGTATCTGTAGATGAAAATTTGTCAGAAATGTCTCCAATAAGGAAAAAGAGGAGCAGGATACAAGATCTTGAGACTTCTCCTGACATTATGAAGATTCTAAGTAAAGAGGGCAGCGATGTATCTCAGAGGAAATATATCAGAATTCCATTTGACTACTTGCATGAAAATACTGATGATGTCAAAGGCTTCAAAGATCGAGATAGAGAGATTGATTTTCGTCATGATACTGACTATTCATTTCAACCACGGGATCAGAATCTTGCTAAATGTATGGTCGCAACAACTCTGAAGAGGGAAAATCATAGTTGGATGTCTGATGAAGATTATATGATGAATAGTGGCTACTCTGCTGCCAAAAGATCCAGTAATTTGGAAGATAATATGTTTACCTCAGCATGGCAAGATCAGCCCTTTAAACTCTGTGCTAGTGTTAGCAAGGGTTCAGCAGATACTGGAGTATCACATCATGATTTCAGTAGCGATGTAGAGGTCACCTGTGATTTAAGACAACCTTTCCTCAATAGTTGTTCCTCCCGAGGAAGGCTTCCATCTGAGAGGGATTGGCTTACAGAAAGTGGGATTAAATGTCAAAATGATTACTTTGGGAGCAAGAGAATGCAGGATGGCTCTTACAACACTGTAGACTTTTCAGAAATTGATGGCAGCAGCAAGAGAATTTGGAGTGGTTCGTATAACAGTGTAGAAGTTCCAGATATCTCGTCAATGACTTCATCCCCTGGGATGGTTTCTAGTGCTCAGCCCTATCCCAGAGTTAGATCAAAGTTTGACCAGTTTCCAGAGTTTGACCCTCTGTCAAGAGCTAATTTGAATTCAATTCCATCCTGTAAGAGCCGTTTAGATGAGGCAAGTTTAGACATGAGTGAAGAGTATATTGGTTCGTGCAACCAGAGCTTAAAAACTGAATGGTACTCTCTGACATCCAATCCGTTATCCCAAAGTACCTTTTTGGATTTTGAACCTTTCTCTAATGAAGATTCAGTTGAAGGGCATTACAGATATAAATATGATAAGAGGGATACTGACAAATATTTTGTTGATGCTGAAGAATTTGAATGCAGCTTTGGATTGGATACGGTGTCAAATATCAGAGAACACTGCATTACAGATATAGACTGTGGACTAGGTTATAATGACAATGCTGGTTCTAGAAAATCCCTTCACCAAGACAATATAGATAGAGAGTTTTCTACTGGACGCCGAAGTAAATTAGCTTATGAGACAGACTGGTTGAGTTGGCATTCACGCAGCAAAGATAACATTTGTATTGACATGCATAATAGACATGAGGAGCAGTCAAAATATCAGGATTGTCTCAAGAGTCATGTTTTAAACAGAAGATCGATACGAAGCCACTCAGCTCCACCATTTCCTAGAAGCAAGAGGAAGTACTTCACTTTAAATCATCCTGCGACAACAGCAGGCAAACATGATGCACAAACCTTCCATGATTCAGCTACTTATCCAGAAGCTGGCACAGTGAAGGATCTCTGCCAACCTCCTAATGGTAGTCATCAAAGTTTGAAGACAACTTCTGTGGAGGATTTATTGTTAGACACCAGACCAGATATTAACGCTGGTGCAAGCAAGATGCAAAAATTGGAAATGTTTGCACAATCTGAAACGTCTGAGGTTCAAGCCACAGCTCCAATTAAAGAAATTATATCCATGAATCAAGATTCGCTGAATTGCGGGACCAAATGGCGGAATTGTTGTCCCCAAATTACAAGCAAAAGTAAAGTGCACGATGTTCAAGATGGAAATGATATACTTGACATATCTTCCGGATTCTTGCATCTTGCTGCTGACTCATTAGTTCCTGAATCTCTCAATAAGAACTGTCTCAAGCATTCCAGAGTTCTTCAGCAGGTGGATAAGAAATTTATTCCAGTCATGGCCAGCCAAACACTTGCTGTTATTGACCAGCATGCTGCAGATGAAAGGATCCGATTGGAGGAGCTGCGTCACAAGGTTTTGTCTGGAGATGGAGAAGCAAAGACCGTTACTTTTCTGGATTTTGAACAAGAGCTGGTGCTGCCAGAGATTGGTTACCAGTTACTGCATAACTATGCTAAAACAATAGAAGAGTGGGGTTGGCGCTGCAACATACATGCTCAAGATTCAGGGTCTTTCAAGAGGAATTTGAATATCCTTCACAGGCAGCCAACCGTCATCACACTTATTGCGGTTCCCTGCATCTTAGGTGTCAATTTATCTGATGTAGATCTTATGGAATTTCTTCAGCAGCTTTCTGATACAGATGGTTCATCAACAATGCCACCATCTGTTCTTCGAATCCTAAATTCTAAAGCATGTAGAGGTGCAATTATGTTTGGGGATTCCTTGCTACCTTCAGAGTGTTCCCTCATCGTTGATGAGCTAAAGCAGACCTCGTTGTGTTTCCAATGTGCTCATGGTCGACCAACAACTGCCCCACTAGTAAATTTGGAAGCGTTGCACAAGCAAATAGCCAAGATTGCATCTTTGAATCAGAACAATGGTGCAGATCAGGTGTGGCATGGGTTACATCGACATGAGCTTAGTCTTGCACGTGCGGAACAACGTTTAAACTCGGCTAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1034

Amino Acids

117.05

Weight (kDa)

5.72

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_mis_repair	PF01119	5 - 137	3.2e-11	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	793 - 954	2.7e-09	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1647
AarI	CACCTGC	1 cut(s)	2374
Acc36I	ACCTGC	1 cut(s)	2374
AccB7I	CCANNNNNTGG	2 cut(s)	1988, 2561
AccI	GTMKAC	4 cut(s)	98, 265, 1140, 2935
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	2300
AciI	CCGC	5 cut(s)	247, 2208, 2221, 2702, 3071
AclI	AACGTT	1 cut(s)	3079
AclWI	GGATC	7 cut(s)	237, 250, 756, 852, 2010, 2455, 2468
AcoI	YGGCCR	1 cut(s)	2412
AcuI	CTGAAG	5 cut(s)	806, 1581, 2363, 2741, 2853
AcvI	CACGTG	1 cut(s)	3068
AcyI	GRCGYC	1 cut(s)	1714
AfaI	GTAC	4 cut(s)	378, 1427, 1459, 1907
AflIII	ACRYGT	1 cut(s)	93
AhdI	GACNNNNNGTC	1 cut(s)	1309
AhlI	ACTAGT	1 cut(s)	2953
AjnI	CCWGG	2 cut(s)	223, 1234
AjuI	GAANNNNNNNTTGG	5 cut(s)	38, 1374, 1406, 1563, 1595
Alw21I	GWGCWC	3 cut(s)	1255, 2262, 2929
Alw26I	GTCTC	7 cut(s)	40, 119, 534, 563, 1730, 1835, 2363
Alw44I	GTGCAC	1 cut(s)	2258
AlwI	GGATC	7 cut(s)	237, 250, 756, 852, 2010, 2455, 2468
AlwNI	CAGNNNCTG	3 cut(s)	950, 1988, 2575
Ama87I	CYCGRG	1 cut(s)	1032
Aor13HI	TCCGGA	1 cut(s)	2300
AoxI	GGCC	4 cut(s)	126, 198, 396, 2412
ApaLI	GTGCAC	1 cut(s)	2258
ArsI	GACNNNNNNTTYG	4 cut(s)	454, 486, 1532, 1564
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	2 cut(s)	1907, 2754
AspLEI	GCGC	1 cut(s)	2616
AspS9I	GGNCC	4 cut(s)	170, 220, 371, 2211
AsuHPI	GGTGA	2 cut(s)	982, 1670
AsuII	TTCGAA	2 cut(s)	210, 2809
AvaI	CYCGRG	1 cut(s)	1032
AvaII	GGWCC	4 cut(s)	170, 220, 371, 2211
BaeGI	GKGCMC	1 cut(s)	2262
BaeI	ACNNNNGTAYC	4 cut(s)	939, 939, 972, 972
BalI	TGGCCA	1 cut(s)	2414
BamHI	GGATCC	2 cut(s)	242, 2460
BbrPI	CACGTG	1 cut(s)	3068
BbsI	GAAGAC	2 cut(s)	350, 2048
Bbv12I	GWGCWC	3 cut(s)	1255, 2262, 2929
BbvCI	CCTCAGC	1 cut(s)	889
BceAI	ACGGC	1 cut(s)	1335
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	2 cut(s)	225, 1236
BciVI	GTATCC	4 cut(s)	83, 549, 1528, 1582
BcoDI	GTCTC	7 cut(s)	40, 119, 534, 563, 1730, 1835, 2363
BcuI	ACTAGT	1 cut(s)	2953
BfaI	CTAG	9 cut(s)	204, 924, 1248, 1640, 1665, 1890, 2954, 3093, 3100
BfmI	CTRYAG	3 cut(s)	504, 1137, 2448
BfoI	RGCGCY	1 cut(s)	2617
BfuAI	ACCTGC	1 cut(s)	2374
BfuI	GTATCC	4 cut(s)	83, 549, 1528, 1582
BglI	GCCNNNNNGGC	1 cut(s)	125
BglII	AGATCT	2 cut(s)	562, 2740
BlpI	GCTNAGC	1 cut(s)	1254
BmcAI	AGTACT	1 cut(s)	1907
Bme1390I	CCNGG	2 cut(s)	225, 1236
Bme18I	GGWCC	4 cut(s)	170, 220, 371, 2211
BmeRI	GACNNNNNGTC	1 cut(s)	1309
BmeT110I	CYCGRG	1 cut(s)	1032
BmgT120I	GGNCC	4 cut(s)	170, 220, 371, 2211
BmiI	GGNNCC	7 cut(s)	221, 222, 244, 372, 2212, 2462, 2706
BmrFI	CCNGG	2 cut(s)	225, 1236
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	7 cut(s)	31, 1546, 1939, 2097, 2320, 2721, 3005
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	2 cut(s)	350, 2048
BpmI	CTGGAG	2 cut(s)	972, 2517
Bpu10I	CCTNAGC	1 cut(s)	889
Bpu1102I	GCTNAGC	1 cut(s)	1254
Bpu14I	TTCGAA	2 cut(s)	210, 2809
BpuEI	CTTGAG	5 cut(s)	255, 587, 1817, 2345, 2616
Bsa29I	ATCGAT	1 cut(s)	1859
BsaAI	YACGTR	1 cut(s)	3068
BsaBI	GATNNNNATC	2 cut(s)	753, 2739
BsaHI	GRCGYC	1 cut(s)	1714
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	6 cut(s)	223, 224, 743, 1033, 1234, 1235
BsaWI	WCCGGW	1 cut(s)	2300
Bse1I	ACTGG	8 cut(s)	281, 861, 955, 1288, 1714, 1748, 2405, 2569
Bse8I	GATNNNNATC	2 cut(s)	753, 2739
BseAI	TCCGGA	1 cut(s)	2300
BseBI	CCWGG	2 cut(s)	225, 1236
BseCI	ATCGAT	1 cut(s)	1859
BseDI	CCNNGG	6 cut(s)	223, 224, 743, 1033, 1234, 1235
BseGI	GGATG	8 cut(s)	129, 813, 1126, 1229, 1245, 1337, 1436, 1921
BseJI	GATNNNNATC	2 cut(s)	753, 2739
BseMII	CTCAG	7 cut(s)	345, 635, 903, 1041, 1268, 1887, 2136
BseNI	ACTGG	8 cut(s)	281, 861, 955, 1288, 1714, 1748, 2405, 2569
BseRI	GAGGAG	3 cut(s)	562, 1820, 2486
BseSI	GKGCMC	1 cut(s)	2262
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	3039
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	128, 200, 398, 2414
BshVI	ATCGAT	1 cut(s)	1859
BsiHKAI	GWGCWC	3 cut(s)	1255, 2262, 2929
BsiHKCI	CYCGRG	1 cut(s)	1032
BsiSI	CCGG	1 cut(s)	2301
BslFI	GGGAC	5 cut(s)	233, 241, 291, 2217, 2224
BsmAI	GTCTC	7 cut(s)	40, 119, 534, 563, 1730, 1835, 2363
BsmFI	GGGAC	5 cut(s)	233, 241, 291, 2217, 2224
BsmI	GAATGC	6 cut(s)	218, 275, 1119, 1577, 1756, 2365
BsnI	GGCC	4 cut(s)	128, 200, 398, 2414
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	1032
Bsp119I	TTCGAA	2 cut(s)	210, 2809
Bsp1286I	GDGCHC	3 cut(s)	1255, 2262, 2929
Bsp13I	TCCGGA	1 cut(s)	2300
Bsp1720I	GCTNAGC	1 cut(s)	1254
BspACI	CCGC	5 cut(s)	247, 2208, 2221, 2702, 3071
BspANI	GGCC	4 cut(s)	128, 200, 398, 2414
BspCNI	CTCAG	7 cut(s)	346, 634, 902, 1042, 1267, 1886, 2137
BspDI	ATCGAT	1 cut(s)	1859
BspEI	TCCGGA	1 cut(s)	2300
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	2 cut(s)	718, 964
BspLI	GGNNCC	7 cut(s)	221, 222, 244, 372, 2212, 2462, 2706
BspMAI	CTGCAG	1 cut(s)	2452
BspMI	ACCTGC	1 cut(s)	2374
BspPI	GGATC	7 cut(s)	237, 250, 756, 852, 2010, 2455, 2468
BspT104I	TTCGAA	2 cut(s)	210, 2809
BspTNI	GGTCTC	1 cut(s)	40
BsrI	ACTGG	8 cut(s)	281, 861, 955, 1288, 1714, 1748, 2405, 2569
BssECI	CCNNGG	6 cut(s)	223, 224, 743, 1033, 1234, 1235
BssNI	GRCGYC	1 cut(s)	1714
Bst2UI	CCWGG	2 cut(s)	225, 1236
Bst6I	CTCTTC	4 cut(s)	251, 782, 1377, 2595
BstACI	GRCGYC	1 cut(s)	1714
BstBAI	YACGTR	1 cut(s)	3068
BstBI	TTCGAA	2 cut(s)	210, 2809
BstC8I	GCNNGC	5 cut(s)	1939, 1990, 2101, 2416, 2445
BstDSI	CCRYGG	1 cut(s)	743
BstEII	GGTNACC	2 cut(s)	988, 2564
BstF5I	GGATG	8 cut(s)	129, 813, 1126, 1229, 1245, 1337, 1436, 1921
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	2617
BstHHI	GCGC	1 cut(s)	2616
BstMAI	GTCTC	7 cut(s)	40, 119, 534, 563, 1730, 1835, 2363
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 213, 904, 1407, 1934, 2551, 2993
BstNI	CCWGG	2 cut(s)	225, 1236
BstNSI	RCATGY	5 cut(s)	97, 1792, 2447, 2630, 2832
BstPI	GGTNACC	2 cut(s)	988, 2564
BstSCI	CCNGG	2 cut(s)	223, 1234
BstSFI	CTRYAG	3 cut(s)	504, 1137, 2448
BstSLI	GKGCMC	1 cut(s)	2262
BstUI	CGCG	1 cut(s)	249
BstV2I	GAAGAC	2 cut(s)	350, 2048
BstX2I	RGATCY	6 cut(s)	242, 562, 857, 2002, 2460, 2740
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	6 cut(s)	242, 562, 857, 2002, 2460, 2740
Bsu15I	ATCGAT	1 cut(s)	1859
BsuI	GTATCC	4 cut(s)	83, 549, 1528, 1582
BsuRI	GGCC	4 cut(s)	128, 200, 398, 2414
BsuTUI	ATCGAT	1 cut(s)	1859
BtgI	CCRYGG	1 cut(s)	743
BtgZI	GCGATG	2 cut(s)	627, 993
BtsCI	GGATG	8 cut(s)	129, 813, 1126, 1229, 1245, 1337, 1436, 1921
BtsI	GCAGTG	1 cut(s)	1612
BtsIMutI	CAGTG	5 cut(s)	495, 1134, 1201, 1612, 2001
BveI	ACCTGC	1 cut(s)	2374
Cac8I	GCNNGC	5 cut(s)	1939, 1990, 2101, 2416, 2445
CaiI	CAGNNNCTG	3 cut(s)	950, 1988, 2575
CciI	TCATGA	2 cut(s)	718, 964
CfoI	GCGC	1 cut(s)	2616
Cfr13I	GGNCC	4 cut(s)	170, 220, 371, 2211
ClaI	ATCGAT	1 cut(s)	1859
CseI	GACGC	2 cut(s)	1722, 2468
Csp6I	GTAC	4 cut(s)	377, 1426, 1458, 1906
CspCI	CAANNNNNGTGG	2 cut(s)	2034, 2069
CviQI	GTAC	4 cut(s)	377, 1426, 1458, 1906
DraI	TTTAAA	5 cut(s)	327, 913, 1848, 1917, 3084
DriI	GACNNNNNGTC	1 cut(s)	1309
EaeI	YGGCCR	1 cut(s)	2412
Eam1104I	CTCTTC	4 cut(s)	251, 782, 1377, 2595
Eam1105I	GACNNNNNGTC	1 cut(s)	1309
EarI	CTCTTC	4 cut(s)	251, 782, 1377, 2595
EciI	GGCGGA	1 cut(s)	2236
Eco31I	GGTCTC	1 cut(s)	40
Eco32I	GATATC	2 cut(s)	426, 1213
Eco47I	GGWCC	4 cut(s)	170, 220, 371, 2211
Eco57I	CTGAAG	5 cut(s)	806, 1581, 2363, 2741, 2853
Eco72I	CACGTG	1 cut(s)	3068
Eco88I	CYCGRG	1 cut(s)	1032
Eco91I	GGTNACC	2 cut(s)	988, 2564
EcoO109I	RGGNCCY	2 cut(s)	220, 371
EcoO65I	GGTNACC	2 cut(s)	988, 2564
EcoRI	GAATTC	2 cut(s)	639, 1327
EcoRII	CCWGG	2 cut(s)	223, 1234
EcoRV	GATATC	2 cut(s)	426, 1213
EcoT22I	ATGCAT	1 cut(s)	1794
FalI	AAGNNNNNCTT	2 cut(s)	994, 1026
FaqI	GGGAC	5 cut(s)	233, 241, 291, 2217, 2224
FauI	CCCGC	2 cut(s)	254, 2201
FauNDI	CATATG	1 cut(s)	349
FblI	GTMKAC	4 cut(s)	98, 265, 1140, 2935
FokI	GGATG	8 cut(s)	116, 820, 1133, 1216, 1252, 1324, 1423, 1908
FspBI	CTAG	9 cut(s)	204, 924, 1248, 1640, 1665, 1890, 2954, 3093, 3100
GlaI	GCGC	1 cut(s)	2615
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	2 cut(s)	972, 2517
HaeII	RGCGCY	1 cut(s)	2617
HaeIII	GGCC	4 cut(s)	128, 200, 398, 2414
HapII	CCGG	1 cut(s)	2301
HgaI	GACGC	2 cut(s)	1722, 2468
HhaI	GCGC	1 cut(s)	2616
Hin1I	GRCGYC	1 cut(s)	1714
Hin6I	GCGC	1 cut(s)	2614
HinP1I	GCGC	1 cut(s)	2614
HincII	GTYRAC	1 cut(s)	2936
HindII	GTYRAC	1 cut(s)	2936
HindIII	AAGCTT	1 cut(s)	406
HpaII	CCGG	1 cut(s)	2301
HphI	GGTGA	2 cut(s)	982, 1670
Hpy166II	GTNNAC	7 cut(s)	99, 266, 885, 1141, 1637, 2260, 2936
Hpy8I	GTNNAC	7 cut(s)	99, 266, 885, 1141, 1637, 2260, 2936
HpyAV	CCTTC	9 cut(s)	409, 461, 1032, 1496, 1685, 1969, 1993, 2678, 2877
HpyCH4IV	ACGT	4 cut(s)	487, 2141, 3067, 3079
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 213, 904, 1407, 1934, 2551, 2993
HpySE526I	ACGT	4 cut(s)	487, 2141, 3067, 3079
Hsp92I	GRCGYC	1 cut(s)	1714
HspAI	GCGC	1 cut(s)	2614
KflI	GGGWCCC	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	2300
LmnI	GCTCC	8 cut(s)	27, 449, 549, 1104, 1807, 1882, 2167, 2473
LweI	GCATC	7 cut(s)	31, 1546, 1939, 2097, 2320, 2721, 3005
MaeI	CTAG	9 cut(s)	204, 924, 1248, 1640, 1665, 1890, 2954, 3093, 3100
MaeII	ACGT	4 cut(s)	487, 2141, 3067, 3079
MaeIII	GTNAC	7 cut(s)	488, 988, 2480, 2518, 2564, 2571, 3039
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	6 cut(s)	242, 562, 857, 2002, 2460, 2740
MhlI	GDGCHC	3 cut(s)	1255, 2262, 2929
MlsI	TGGCCA	1 cut(s)	2414
MluNI	TGGCCA	1 cut(s)	2414
MlyI	GAGTC	2 cut(s)	1846, 2318
MmeI	TCCRAC	2 cut(s)	220, 785
Mox20I	TGGCCA	1 cut(s)	2414
Mph1103I	ATGCAT	1 cut(s)	1794
MroI	TCCGGA	1 cut(s)	2300
MroXI	GAANNNNTTC	2 cut(s)	1907, 2754
MscI	TGGCCA	1 cut(s)	2414
MslI	CAYNNNNRTG	2 cut(s)	2583, 3048
Msp20I	TGGCCA	1 cut(s)	2414
MspI	CCGG	1 cut(s)	2301
MspR9I	CCNGG	2 cut(s)	225, 1236
MssI	GTTTAAAC	1 cut(s)	3084
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	6 cut(s)	218, 275, 1119, 1577, 1756, 2365
MvaI	CCWGG	2 cut(s)	225, 1236
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	7 cut(s)	125, 213, 904, 1407, 1934, 2551, 2993
NdeI	CATATG	1 cut(s)	349
NlaIV	GGNNCC	7 cut(s)	221, 222, 244, 372, 2212, 2462, 2706
NmeAIII	GCCGAG	1 cut(s)	3068
NmuCI	GTSAC	3 cut(s)	488, 988, 2480
NsiI	ATGCAT	1 cut(s)	1794
NspI	RCATGY	5 cut(s)	97, 1792, 2447, 2630, 2832
NspV	TTCGAA	2 cut(s)	210, 2809
PaeI	GCATGC	1 cut(s)	2447
PagI	TCATGA	2 cut(s)	718, 964
PaqCI	CACCTGC	1 cut(s)	2374
PasI	CCCWGGG	2 cut(s)	224, 1235
PciI	ACATGT	1 cut(s)	93
PctI	GAATGC	6 cut(s)	218, 275, 1119, 1577, 1756, 2365
PdmI	GAANNNNTTC	2 cut(s)	1907, 2754
PflMI	CCANNNNNTGG	2 cut(s)	1988, 2561
PleI	GAGTC	2 cut(s)	1845, 2318
PmaCI	CACGTG	1 cut(s)	3068
PmeI	GTTTAAAC	1 cut(s)	3084
PmlI	CACGTG	1 cut(s)	3068
PpsI	GAGTC	2 cut(s)	1845, 2318
Ppu21I	YACGTR	1 cut(s)	3068
PpuMI	RGGWCCY	2 cut(s)	220, 371
PscI	ACATGT	1 cut(s)	93
PshBI	ATTAAT	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	1647
Psp1406I	AACGTT	1 cut(s)	3079
Psp5II	RGGWCCY	2 cut(s)	220, 371
Psp6I	CCWGG	2 cut(s)	223, 1234
PspCI	CACGTG	1 cut(s)	3068
PspEI	GGTNACC	2 cut(s)	988, 2564
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	2 cut(s)	223, 1234
PspN4I	GGNNCC	7 cut(s)	221, 222, 244, 372, 2212, 2462, 2706
PspPI	GGNCC	4 cut(s)	170, 220, 371, 2211
PspPPI	RGGWCCY	2 cut(s)	220, 371
PstI	CTGCAG	1 cut(s)	2452
PstNI	CAGNNNCTG	3 cut(s)	950, 1988, 2575
PsuI	RGATCY	6 cut(s)	242, 562, 857, 2002, 2460, 2740
RsaI	GTAC	4 cut(s)	378, 1427, 1459, 1907
RsaNI	GTAC	4 cut(s)	377, 1426, 1458, 1906
RseI	CAYNNNNRTG	2 cut(s)	2583, 3048
SalI	GTCGAC	1 cut(s)	2934
Sau96I	GGNCC	4 cut(s)	170, 220, 371, 2211
ScaI	AGTACT	1 cut(s)	1907
SchI	GAGTC	2 cut(s)	1846, 2318
ScrFI	CCNGG	2 cut(s)	225, 1236
SduI	GDGCHC	3 cut(s)	1255, 2262, 2929
SfaNI	GCATC	7 cut(s)	31, 1546, 1939, 2097, 2320, 2721, 3005
SfcI	CTRYAG	3 cut(s)	504, 1137, 2448
SfuI	TTCGAA	2 cut(s)	210, 2809
SinI	GGWCC	4 cut(s)	170, 220, 371, 2211
SmiMI	CAYNNNNRTG	2 cut(s)	2583, 3048
SmlI	CTYRAG	5 cut(s)	270, 566, 1832, 2360, 2631
SmoI	CTYRAG	5 cut(s)	270, 566, 1832, 2360, 2631
SpeI	ACTAGT	1 cut(s)	2953
SphI	GCATGC	1 cut(s)	2447
SsiI	CCGC	5 cut(s)	247, 2208, 2221, 2702, 3071
SspI	AATATT	2 cut(s)	137, 1547
SspMI	CTAG	9 cut(s)	204, 924, 1248, 1640, 1665, 1890, 2954, 3093, 3100
StyD4I	CCNGG	2 cut(s)	223, 1234
TaiI	ACGT	4 cut(s)	490, 2144, 3070, 3082
TaqI	TCGA	7 cut(s)	210, 341, 694, 1859, 2809, 2935, 3046
TatI	WGTACW	2 cut(s)	376, 1905
TscAI	CASTG	5 cut(s)	502, 1141, 1201, 1619, 2001
TseFI	GTSAC	3 cut(s)	488, 988, 2480
Tsp45I	GTSAC	3 cut(s)	488, 988, 2480
TspGWI	ACGGA	1 cut(s)	1434
TspRI	CASTG	5 cut(s)	502, 1141, 1201, 1619, 2001
Van91I	CCANNNNNTGG	2 cut(s)	1988, 2561
VneI	GTGCAC	1 cut(s)	2258
VpaK11BI	GGWCC	4 cut(s)	170, 220, 371, 2211
VspI	ATTAAT	1 cut(s)	147
XbaI	TCTAGA	1 cut(s)	1664
XceI	RCATGY	5 cut(s)	97, 1792, 2447, 2630, 2832
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2018, 2927
XmiI	GTMKAC	4 cut(s)	98, 265, 1140, 2935
XmnI	GAANNNNTTC	2 cut(s)	1907, 2754
XspI	CTAG	9 cut(s)	204, 924, 1248, 1640, 1665, 1890, 2954, 3093, 3100
ZrmI	AGTACT	1 cut(s)	1907
Zsp2I	ATGCAT	1 cut(s)	1794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.