Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024596.1

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Reverse (-)

14347 .. 21447

Gene Structure 7101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024596.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3768 bp

atgaggagcttgaggcggttgccggaggcagttcggagctcgattcggtctggggtgattctgtatgacgtagctagggttgtggaggagctcgtctttaatagcttggacgctggcgcaagaaaggtgtcagttttcgtaggaattgggacttgttatgtgaaagtagttgatgatggatgtgggattactcgtgatggattggtgttgttgggagatagatatgccacgtcgaagtttgaacaatttactgaggcggatgctgcaagtgtgagctttggttccagaggggaagcactggcttcgatttctgacgtggcattgcttgaagttgtaaccaaaacttctgggagaccaaatgggtatcgcaaagtgatgaagggattcaaatgtttgtatcttggggtagatgacgataggaaggatgttggcacaacagttgttgttcgtgatttgttttacaatcaaccagttcggaggaagtgcatgcgatccagcccgaagaaggtattggacactgtcaagaaatgtgtacacaggatcgcactggtgcactcaatggtttccttcaaagttgtcgatatggagagtgaggatgagcttcttcgtaccattccttctccttctcccatgacattattggaaagtgcttttgggagcgaggtctctgatgcacttcacaaattgaacataagtgatggcaaattagagctttctggatacatatctactccttgcaatagtctcgccattaaggccatccaatatttctatattaattcacggttcatttgcaaaggaccaattcacaaattgcttaatcaattggcctctagcttcgaatgctgggacccagggacagctgttgttggatcccgcaacaggaagagaaatagacctcaagcattcccagtttatgtcttgaatttaagttgtccccaatcattctatgatttaaactttgaaccatcgaagacatatgctgagttcaaggattggggtcctgtactcaactttattgataaggccattcaaagcttctggaaggaaaagatatcctatgtagaatctgtttgtcatggagctgatatacgaagagaaggtcaaatgtgggaggaacgtgacaacactgtatctgtagatgaaaatttgctggatgtagatttgtcagaaatgtctccaataaggaaaaagaggagcaggatacaagatcttgagacttctcctgacattatgaagattctaagtaaagagggcagcgatgtatctcagaggaaatatatcagaattccatttgactacttgcatgaaaatactgatgatgtcaaaggcttcaaagatcgagatagtgagattgattttcgtcatgatagtgactattcatttcaaccacgggatcagaatcttgctaaatgtatggtcgcaacaactctgaagagggaaaatcatagttggatgtctgatatcaatttttcacctgatgaagattgtatgatggatagtggctactctgctgccaaaagatccagtaatttggaagataatatgtttacctcagcatggcaagatcagcgctttaaactctgtgctagtgttaacaagggttcagcagatactggagtatcacatcatgatttcagtagcaatgtagaggtcacctgtgatttaagacaacctttcctcaatagttgttccttccgaggaaggcttccatctgagagggatttgcttacagaaagtgggattaaatgtcaaaatgattactttgggagcaagagaatgcaggatggctcttacaacactttagacttttcagaaattgatggcagcagcaagagaattcggagtggttcttataacagtgtagaagttccagatatctcctcaatgacttcatccccagggatggtttctagtgctcagccctatgccagagttagatcaaagtttgacccgtttgcagagtttgaccctctgtcaagagctaatttgaattcaattacatcctgtaagggccgtttagatgaggcaagtttagacatgagtgaagagtatattggttcgtgcaaccagaccttaaaaactgaatggtactctgtgacatccaatccgttatcccaaagtacctatttggattttgaacctttctctaatgaagattcagttgaagggcattacagatataaatatgataagagggatactgacaaatattttgttgatgctgaagaatttgaatgcagctttggatcggatatagtgtcaaatatcagagaacactgcattacagatatagactgtggactaggttataatgacaatgctggttctagaaaattccttcaccaagacaatatagatagagagttttctactggacgccaaggtaaattagcttatgagacagactggttaagctggcattcacgcagcaaagataacatttgtattgacatgcataatagacatgaggagcagtcaaaatatcaggattgtctcaagaatcatgttttaaacagaagatcgatacgaagccactcagctccaccatttcctagaagcaagaggaagtacttcactttaaatcatcctgcgacaacagcaggcaaacatgatgcacaaaccttccatgattcagctacttatccagaagctggcacagtgaaggatctctgtcaacctcgtaatggtaatcatcaaaatttgaagacaacttctgtggaggatttattgttagacaccagaccagatattaacgctggtgcaagcaagatgcaaaaattggaaatgtttgaacaatctaaaaggtctgaggttcaagccacagctccaattaaagaaattatatccatgaatcaagattcgctgaattgtgggaccaaatggcggaattgttgtccccaaattacaagcaaaagtaaagtgcacggtgttcaagatggaaatgatatacttgacatatcttccggattcttgcatcttgctgctgactcattagttcctgaatctctccataagaactgtctcaagcattccagagttcttcagcaggtggataagaaatttattccagtcatggccggccaaacacttgctgttattgaccagcatgctgcagatgaaaggatccgattggaggagctgcgtcacaaggttttgtctggagatggagaagcaaagaccgttacttttctggattttgaacaagagctggtgctgccagagattggttaccagttactgcataactatgctaaaacaatagaagagtggggttggcgctgcaacatacatgctcaagattcagggtctttcaagaggaatttgaatttccttcacaggcagccaaccgtcatcacacttattgcggttccctgcatcttaggtgtcaatttatctgatgtagatcttatggaatttcttcagcagctttctgatacagatggatcatcaacaatgccaccatctgttcttcgaatcctaaattctaaagcatgtagaggtgcaattatgtttggggattccttgctaccttcagagtgttccctcatcgttgatgagctaaagcagacctcattgtgtttccaatgtgctcatggtcgaccaacaactgccccactagtaaatttggaagcgttgcacaagcaaatagctaagattgcatctttgaatctgaacaatggtgcagatcaggcgtggcatgggttacatcaacatgagcttagtcttgcacgtgcagaacaacgtttaaactcggctagaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1255

Amino Acids

141.49

Weight (kDa)

6.13

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1857, 2313
AarI	CACCTGC	1 cut(s)	3040
Acc36I	ACCTGC	1 cut(s)	3040
AccB7I	CCANNNNNTGG	2 cut(s)	2654, 3227
AccI	GTMKAC	1 cut(s)	3601
AccIII	TCCGGA	1 cut(s)	2966
AciI	CCGC	5 cut(s)	16, 257, 877, 2887, 3368
AclI	AACGTT	1 cut(s)	3745
AcoI	YGGCCR	2 cut(s)	3078, 3082
AcuI	CTGAAG	5 cut(s)	1454, 2247, 3029, 3407, 3519
AcvI	CACGTG	1 cut(s)	3734
AcyI	GRCGYC	1 cut(s)	2380
AfaI	GTAC	6 cut(s)	534, 610, 1008, 2093, 2125, 2573
AfeI	AGCGCT	1 cut(s)	1574
AfiI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1906, 2654, 2687, 2886, 3136, 3227
AhdI	GACNNNNNGTC	1 cut(s)	1975
AhlI	ACTAGT	1 cut(s)	3619
AjiI	CACGTC	2 cut(s)	231, 316
AjnI	CCWGG	2 cut(s)	853, 1900
AjuI	GAANNNNNNNTTGG	8 cut(s)	494, 526, 636, 668, 2040, 2072, 2229, 2261
Alw21I	GWGCWC	6 cut(s)	41, 93, 555, 1921, 2928, 3595
Alw26I	GTCTC	8 cut(s)	346, 670, 749, 1182, 1211, 2396, 2501, 3029
Alw44I	GTGCAC	2 cut(s)	551, 2924
AlwNI	CAGNNNCTG	3 cut(s)	1616, 2654, 3241
Aor13HI	TCCGGA	1 cut(s)	2966
Aor51HI	AGCGCT	1 cut(s)	1574
AoxI	GGCC	6 cut(s)	756, 828, 1026, 2014, 3078, 3082
ApaLI	GTGCAC	2 cut(s)	551, 2924
ArsI	GACNNNNNNTTYG	4 cut(s)	1087, 1119, 2198, 2230
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	3 cut(s)	383, 2573, 3420
AspLEI	GCGC	3 cut(s)	119, 1575, 3282
AspS9I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2877
AsuHPI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
AsuII	TTCGAA	2 cut(s)	840, 3475
AvaII	GGWCC	4 cut(s)	800, 850, 1001, 2877
BaeGI	GKGCMC	2 cut(s)	555, 2928
BaeI	ACNNNNGTAYC	4 cut(s)	1605, 1605, 1638, 1638
BamHI	GGATCC	2 cut(s)	872, 3126
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	3734
BbsI	GAAGAC	2 cut(s)	980, 2714
Bbv12I	GWGCWC	6 cut(s)	41, 93, 555, 1921, 2928, 3595
BbvCI	CCTCAGC	1 cut(s)	1555
BceAI	ACGGC	1 cut(s)	2001
BcgI	CGANNNNNNTGC	4 cut(s)	285, 319, 727, 761
BciT130I	CCWGG	2 cut(s)	855, 1902
BciVI	GTATCC	3 cut(s)	713, 1197, 2194
BcoDI	GTCTC	8 cut(s)	346, 670, 749, 1182, 1211, 2396, 2501, 3029
BcuI	ACTAGT	1 cut(s)	3619
BfmI	CTRYAG	2 cut(s)	1137, 3114
BfoI	RGCGCY	2 cut(s)	1576, 3283
BfuAI	ACCTGC	1 cut(s)	3040
BfuI	GTATCC	3 cut(s)	713, 1197, 2194
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	2 cut(s)	1210, 3406
BlpI	GCTNAGC	1 cut(s)	1920
BmcAI	AGTACT	1 cut(s)	2573
Bme1390I	CCNGG	2 cut(s)	855, 1902
Bme18I	GGWCC	4 cut(s)	800, 850, 1001, 2877
BmeRI	GACNNNNNGTC	1 cut(s)	1975
BmgBI	CACGTC	2 cut(s)	231, 316
BmgT120I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2877
BmiI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
BmrFI	CCNGG	2 cut(s)	855, 1902
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	8 cut(s)	250, 661, 2212, 2605, 2763, 2986, 3387, 3671
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	980, 2714
BpmI	CTGGAG	2 cut(s)	1638, 3183
Bpu10I	CCTNAGC	1 cut(s)	1555
Bpu1102I	GCTNAGC	1 cut(s)	1920
Bpu14I	TTCGAA	2 cut(s)	840, 3475
BpuEI	CTTGAG	6 cut(s)	31, 885, 1235, 2483, 3011, 3282
Bsa29I	ATCGAT	1 cut(s)	2525
BsaAI	YACGTR	1 cut(s)	3734
BsaBI	GATNNNNATC	3 cut(s)	724, 1401, 3405
BsaHI	GRCGYC	1 cut(s)	2380
BsaI	GGTCTC	2 cut(s)	346, 670
BsaJI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BsaWI	WCCGGW	1 cut(s)	2966
Bsc4I	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1906, 2654, 2687, 2886, 3136, 3227
Bse118I	RCCGGY	1 cut(s)	3080
Bse3DI	GCAATG	2 cut(s)	320, 1651
Bse8I	GATNNNNATC	3 cut(s)	724, 1401, 3405
BseAI	TCCGGA	1 cut(s)	2966
BseBI	CCWGG	2 cut(s)	855, 1902
BseCI	ATCGAT	1 cut(s)	2525
BseDI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BseJI	GATNNNNATC	3 cut(s)	724, 1401, 3405
BseLI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1906, 2654, 2687, 2886, 3136, 3227
BseMI	GCAATG	2 cut(s)	320, 1651
BseMII	CTCAG	8 cut(s)	243, 975, 1283, 1569, 1707, 1934, 2553, 2802
BseRI	GAGGAG	6 cut(s)	19, 101, 1210, 1873, 2486, 3152
BseSI	GKGCMC	2 cut(s)	555, 2928
BseYI	CCCAGC	1 cut(s)	846
BsgI	GTGCAG	2 cut(s)	3705, 3756
BshFI	GGCC	6 cut(s)	758, 830, 1028, 2016, 3080, 3084
BshVI	ATCGAT	1 cut(s)	2525
BsiHKAI	GWGCWC	6 cut(s)	41, 93, 555, 1921, 2928, 3595
BsiSI	CCGG	3 cut(s)	23, 2967, 3081
BslFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
BslI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1906, 2654, 2687, 2886, 3136, 3227
BsmAI	GTCTC	8 cut(s)	346, 670, 749, 1182, 1211, 2396, 2501, 3029
BsmFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
BsmI	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3031
BsnI	GGCC	6 cut(s)	758, 830, 1028, 2016, 3080, 3084
Bso31I	GGTCTC	2 cut(s)	346, 670
Bsp119I	TTCGAA	2 cut(s)	840, 3475
Bsp1286I	GDGCHC	6 cut(s)	41, 93, 555, 1921, 2928, 3595
Bsp13I	TCCGGA	1 cut(s)	2966
Bsp1407I	TGTACA	1 cut(s)	532
Bsp1720I	GCTNAGC	1 cut(s)	1920
BspACI	CCGC	5 cut(s)	16, 257, 877, 2887, 3368
BspANI	GGCC	6 cut(s)	758, 830, 1028, 2016, 3080, 3084
BspCNI	CTCAG	8 cut(s)	244, 976, 1282, 1568, 1708, 1933, 2552, 2803
BspDI	ATCGAT	1 cut(s)	2525
BspEI	TCCGGA	1 cut(s)	2966
BspHI	TCATGA	2 cut(s)	1366, 1630
BspLI	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
BspMAI	CTGCAG	1 cut(s)	3118
BspMI	ACCTGC	1 cut(s)	3040
BspT104I	TTCGAA	2 cut(s)	840, 3475
BspTNI	GGTCTC	2 cut(s)	346, 670
BsrDI	GCAATG	2 cut(s)	320, 1651
BsrFI	RCCGGY	1 cut(s)	3080
BsrGI	TGTACA	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	3080
BssECI	CCNNGG	7 cut(s)	853, 854, 1391, 1699, 1900, 1901, 2383
BssNI	GRCGYC	1 cut(s)	2380
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	2383
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	855, 1902
Bst6I	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3261
BstACI	GRCGYC	1 cut(s)	2380
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	3734
BstBI	TTCGAA	2 cut(s)	840, 3475
BstC8I	GCNNGC	8 cut(s)	115, 488, 2420, 2605, 2656, 2767, 3082, 3111
BstDSI	CCRYGG	1 cut(s)	1391
BstEII	GGTNACC	2 cut(s)	1654, 3230
BstH2I	RGCGCY	2 cut(s)	1576, 3283
BstHHI	GCGC	3 cut(s)	119, 1575, 3282
BstMAI	GTCTC	8 cut(s)	346, 670, 749, 1182, 1211, 2396, 2501, 3029
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 755, 843, 1570, 2600, 3217, 3659, 3692
BstNI	CCWGG	2 cut(s)	855, 1902
BstNSI	RCATGY	5 cut(s)	490, 2458, 3113, 3296, 3498
BstPI	GGTNACC	2 cut(s)	1654, 3230
BstSCI	CCNGG	2 cut(s)	853, 1900
BstSFI	CTRYAG	2 cut(s)	1137, 3114
BstSLI	GKGCMC	2 cut(s)	555, 2928
BstV2I	GAAGAC	2 cut(s)	980, 2714
BstX2I	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
BstXI	CCANNNNNNTGG	1 cut(s)	1534
BstYI	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
Bsu15I	ATCGAT	1 cut(s)	2525
BsuI	GTATCC	3 cut(s)	713, 1197, 2194
BsuRI	GGCC	6 cut(s)	758, 830, 1028, 2016, 3080, 3084
BsuTUI	ATCGAT	1 cut(s)	2525
BtgI	CCRYGG	1 cut(s)	1391
BtgZI	GCGATG	1 cut(s)	1275
BtrI	CACGTC	2 cut(s)	231, 316
BtsI	GCAGTG	1 cut(s)	2278
BtsIMutI	CAGTG	7 cut(s)	296, 516, 545, 1128, 1867, 2278, 2667
BveI	ACCTGC	1 cut(s)	3040
Cac8I	GCNNGC	8 cut(s)	115, 488, 2420, 2605, 2656, 2767, 3082, 3111
CaiI	CAGNNNCTG	3 cut(s)	1616, 2654, 3241
CciI	TCATGA	2 cut(s)	1366, 1630
CfoI	GCGC	3 cut(s)	119, 1575, 3282
Cfr10I	RCCGGY	1 cut(s)	3080
Cfr13I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2877
ClaI	ATCGAT	1 cut(s)	2525
CseI	GACGC	3 cut(s)	119, 2388, 3134
Csp6I	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
CspCI	CAANNNNNGTGG	2 cut(s)	2700, 2735
CviQI	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
DraI	TTTAAA	5 cut(s)	957, 1579, 2514, 2583, 3750
DriI	GACNNNNNGTC	1 cut(s)	1975
EaeI	YGGCCR	2 cut(s)	3078, 3082
Eam1104I	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3261
Eam1105I	GACNNNNNGTC	1 cut(s)	1975
EarI	CTCTTC	5 cut(s)	881, 1090, 1430, 2043, 3261
EciI	GGCGGA	2 cut(s)	272, 2902
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco130I	CCWWGG	1 cut(s)	2383
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	2 cut(s)	346, 670
Eco32I	GATATC	3 cut(s)	1056, 1465, 1879
Eco47I	GGWCC	4 cut(s)	800, 850, 1001, 2877
Eco47III	AGCGCT	1 cut(s)	1574
Eco53kI	GAGCTC	2 cut(s)	39, 91
Eco57I	CTGAAG	5 cut(s)	1454, 2247, 3029, 3407, 3519
Eco72I	CACGTG	1 cut(s)	3734
Eco91I	GGTNACC	2 cut(s)	1654, 3230
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoO109I	RGGNCCY	2 cut(s)	850, 1001
EcoO65I	GGTNACC	2 cut(s)	1654, 3230
EcoRI	GAATTC	3 cut(s)	1287, 1839, 1993
EcoRII	CCWGG	2 cut(s)	853, 1900
EcoRV	GATATC	3 cut(s)	1056, 1465, 1879
EcoT14I	CCWWGG	1 cut(s)	2383
EcoT22I	ATGCAT	1 cut(s)	2460
EcoT38I	GRGCYC	2 cut(s)	41, 93
ErhI	CCWWGG	1 cut(s)	2383
FalI	AAGNNNNNCTT	2 cut(s)	1660, 1692
FaqI	GGGAC	6 cut(s)	163, 863, 871, 921, 2883, 2890
FauI	CCCGC	1 cut(s)	884
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	3601
FriOI	GRGCYC	2 cut(s)	41, 93
FseI	GGCCGGCC	1 cut(s)	3084
GlaI	GCGC	3 cut(s)	118, 1574, 3281
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	2 cut(s)	1638, 3183
HaeII	RGCGCY	2 cut(s)	1576, 3283
HaeIII	GGCC	6 cut(s)	758, 830, 1028, 2016, 3080, 3084
HapII	CCGG	3 cut(s)	23, 2967, 3081
HgaI	GACGC	3 cut(s)	119, 2388, 3134
HhaI	GCGC	3 cut(s)	119, 1575, 3282
Hin1I	GRCGYC	1 cut(s)	2380
Hin6I	GCGC	3 cut(s)	117, 1573, 3280
HinP1I	GCGC	3 cut(s)	117, 1573, 3280
HincII	GTYRAC	3 cut(s)	1597, 2678, 3602
HindII	GTYRAC	3 cut(s)	1597, 2678, 3602
HindIII	AAGCTT	1 cut(s)	1036
HpaI	GTTAAC	1 cut(s)	1597
HpaII	CCGG	3 cut(s)	23, 2967, 3081
HphI	GGTGA	4 cut(s)	67, 1467, 1648, 2336
Hpy166II	GTNNAC	9 cut(s)	533, 535, 553, 1551, 1597, 2303, 2678, 2926, 3602
Hpy8I	GTNNAC	9 cut(s)	533, 535, 553, 1551, 1597, 2303, 2678, 2926, 3602
Hpy99I	CGWCG	1 cut(s)	235
HpyCH4IV	ACGT	6 cut(s)	69, 230, 315, 1120, 3733, 3745
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 755, 843, 1570, 2600, 3217, 3659, 3692
HpySE526I	ACGT	6 cut(s)	69, 230, 315, 1120, 3733, 3745
Hsp92I	GRCGYC	1 cut(s)	2380
HspAI	GCGC	3 cut(s)	117, 1573, 3280
KflI	GGGWCCC	1 cut(s)	850
Kpn2I	TCCGGA	1 cut(s)	2966
KroI	GCCGGC	1 cut(s)	3080
KroNI	GCCGGC	1 cut(s)	3082
KspAI	GTTAAC	1 cut(s)	1597
LweI	GCATC	8 cut(s)	250, 661, 2212, 2605, 2763, 2986, 3387, 3671
MaeII	ACGT	6 cut(s)	69, 230, 315, 1120, 3733, 3745
MfeI	CAATTG	1 cut(s)	824
MflI	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
MhlI	GDGCHC	6 cut(s)	41, 93, 555, 1921, 2928, 3595
MlyI	GAGTC	1 cut(s)	2984
MmeI	TCCRAC	2 cut(s)	850, 1433
Mph1103I	ATGCAT	1 cut(s)	2460
MroI	TCCGGA	1 cut(s)	2966
MroNI	GCCGGC	1 cut(s)	3080
MroXI	GAANNNNTTC	3 cut(s)	383, 2573, 3420
MslI	CAYNNNNRTG	3 cut(s)	1371, 3249, 3714
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	3 cut(s)	23, 2967, 3081
MspR9I	CCNGG	2 cut(s)	855, 1902
MssI	GTTTAAAC	1 cut(s)	3750
MunI	CAATTG	1 cut(s)	824
Mva1269I	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3031
MvaI	CCWGG	2 cut(s)	855, 1902
MwoI	GCNNNNNNNGC	8 cut(s)	263, 755, 843, 1570, 2600, 3217, 3659, 3692
NaeI	GCCGGC	1 cut(s)	3082
NdeI	CATATG	1 cut(s)	979
NgoMIV	GCCGGC	1 cut(s)	3080
NlaIV	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
NmeAIII	GCCGAG	1 cut(s)	3734
NmuCI	GTSAC	5 cut(s)	1121, 1373, 1654, 2098, 3146
NsiI	ATGCAT	1 cut(s)	2460
NspI	RCATGY	5 cut(s)	490, 2458, 3113, 3296, 3498
NspV	TTCGAA	2 cut(s)	840, 3475
PaeI	GCATGC	2 cut(s)	490, 3113
PagI	TCATGA	2 cut(s)	1366, 1630
PaqCI	CACCTGC	1 cut(s)	3040
PasI	CCCWGGG	2 cut(s)	854, 1901
PctI	GAATGC	6 cut(s)	848, 905, 1785, 2243, 2422, 3031
PdiI	GCCGGC	1 cut(s)	3082
PdmI	GAANNNNTTC	3 cut(s)	383, 2573, 3420
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	2654, 3227
PleI	GAGTC	1 cut(s)	2984
PmaCI	CACGTG	1 cut(s)	3734
PmeI	GTTTAAAC	1 cut(s)	3750
PmlI	CACGTG	1 cut(s)	3734
PpsI	GAGTC	1 cut(s)	2984
Ppu21I	YACGTR	1 cut(s)	3734
PpuMI	RGGWCCY	2 cut(s)	850, 1001
PshBI	ATTAAT	1 cut(s)	777
PsiI	TTATAA	2 cut(s)	1857, 2313
Psp124BI	GAGCTC	2 cut(s)	41, 93
Psp1406I	AACGTT	1 cut(s)	3745
Psp5II	RGGWCCY	2 cut(s)	850, 1001
Psp6I	CCWGG	2 cut(s)	853, 1900
PspCI	CACGTG	1 cut(s)	3734
PspEI	GGTNACC	2 cut(s)	1654, 3230
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	2 cut(s)	853, 1900
PspN4I	GGNNCC	8 cut(s)	283, 851, 852, 874, 1002, 2878, 3128, 3372
PspPI	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2877
PspPPI	RGGWCCY	2 cut(s)	850, 1001
PstI	CTGCAG	1 cut(s)	3118
PstNI	CAGNNNCTG	3 cut(s)	1616, 2654, 3241
PsuI	RGATCY	6 cut(s)	872, 1210, 1523, 2668, 3126, 3406
PsyI	GACNNNGTC	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	863
RigI	GGCCGGCC	1 cut(s)	3084
RsaI	GTAC	6 cut(s)	534, 610, 1008, 2093, 2125, 2573
RsaNI	GTAC	6 cut(s)	533, 609, 1007, 2092, 2124, 2572
RseI	CAYNNNNRTG	3 cut(s)	1371, 3249, 3714
SacI	GAGCTC	2 cut(s)	41, 93
SalI	GTCGAC	1 cut(s)	3600
Sau96I	GGNCC	5 cut(s)	800, 850, 1001, 2014, 2877
ScaI	AGTACT	1 cut(s)	2573
SchI	GAGTC	1 cut(s)	2984
ScrFI	CCNGG	2 cut(s)	855, 1902
SduI	GDGCHC	6 cut(s)	41, 93, 555, 1921, 2928, 3595
SfaNI	GCATC	8 cut(s)	250, 661, 2212, 2605, 2763, 2986, 3387, 3671
SfcI	CTRYAG	2 cut(s)	1137, 3114
SfuI	TTCGAA	2 cut(s)	840, 3475
SinI	GGWCC	4 cut(s)	800, 850, 1001, 2877
SmiMI	CAYNNNNRTG	3 cut(s)	1371, 3249, 3714
SmlI	CTYRAG	6 cut(s)	10, 900, 1214, 2498, 3026, 3297
SmoI	CTYRAG	6 cut(s)	10, 900, 1214, 2498, 3026, 3297
SpeI	ACTAGT	1 cut(s)	3619
SphI	GCATGC	2 cut(s)	490, 3113
SsiI	CCGC	5 cut(s)	16, 257, 877, 2887, 3368
SspI	AATATT	2 cut(s)	767, 2213
SstI	GAGCTC	2 cut(s)	41, 93
StyD4I	CCNGG	2 cut(s)	853, 1900
StyI	CCWWGG	1 cut(s)	2383
TaiI	ACGT	6 cut(s)	72, 233, 318, 1123, 3736, 3748
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	3 cut(s)	532, 1006, 2571
TscAI	CASTG	7 cut(s)	303, 523, 552, 1135, 1867, 2285, 2667
TseFI	GTSAC	5 cut(s)	1121, 1373, 1654, 2098, 3146
Tsp45I	GTSAC	5 cut(s)	1121, 1373, 1654, 2098, 3146
TspGWI	ACGGA	1 cut(s)	2100
TspRI	CASTG	7 cut(s)	303, 523, 552, 1135, 1867, 2285, 2667
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	2 cut(s)	2654, 3227
VneI	GTGCAC	2 cut(s)	551, 2924
VpaK11BI	GGWCC	4 cut(s)	800, 850, 1001, 2877
VspI	ATTAAT	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	2330
XceI	RCATGY	5 cut(s)	490, 2458, 3113, 3296, 3498
XcmI	CCANNNNNNNNNTGG	2 cut(s)	637, 3593
XmiI	GTMKAC	1 cut(s)	3601
XmnI	GAANNNNTTC	3 cut(s)	383, 2573, 3420
ZrmI	AGTACT	1 cut(s)	2573
Zsp2I	ATGCAT	1 cut(s)	2460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.