Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

8676253 .. 8683391

Gene Structure 7139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3558 bp

ATGAGGAGCTTGAGGCGGTTGCCGGAGGCAGTTCGGAGCTCGATTCGGTCTGGGGTGATTCTGTATGACGTGGCTAGGGTTGTGGAGGAGCTCGTCTTTAATAGCTTGGACGCTGGCGCAAGAAAGGTGTCAGTTTTCGTAGGAATTGGGACTTGTTATGTGAAAGTAGTTGATGATGGATGTGGGATTACTCGTGATGGATTGGTGTTGTTGGGAGAAAGATATGCCACGTCGAAGTTTGAACAATTTACTGAGGCGGATGCTGCAAGTGTGAGCTTTGGTTCCAGAGGGGAAGCACTGGCTTCGATTTCTGACGTGGCATTGCTTGAAGTTGTAACCAAAGCTTCTGGGAGACCAAATGGGTATCGCAAAGTGATGAAGGGATTCAAATGTTTGTATCTTGGGGTAGATGACGATAGGAAGGATGTTGGCACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGGAGGAAGTGCATGCGATCCAGCCCGAAGAAGGTATTGGACACTGTCAAGAAATGTGTACACAGGATCGCACTGGTGCACTCAATGGTTTCCTTCAAAGTTGTCGATATGGAGAGTGAGGATGAGCTTCTTCGTACCATTCCTTCTCCTTCTCCCATGACATTATTGGAAAGTGCTTTTGGGAGCGAGGATCTATATTTTTTTCTTTTGTTTTTGTCCTTCACCATTACAGATATTAATTCACGGTTCATTTGCAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACAGCTGTTGTTGGATCCCGCAACAGGAAGAGAAATAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAAGTTGTCCCCAATCATTCTATGATTTAAACTTTGAACCATCGAAGACATATGCTGAGTTCAAGGATTGGGATCCTGTACTCAACTTTATTGATAAGGCCATTCAAAGCTTCTGGAAGGAAAAGCTATCCTATGTAGAATCTGTTTGTCATGGAGCTGATATACGAAGAGAAGGTCAAATGTGGGAGGAACGTGACAACACTGTATCTGTAGATGAAGTAAGAAATAGGTTTTATTTGCTGGATGTAGATTTGTCAGAAATGTCTCCAATAAGGAAAAAGAGGAGCAGGATACAAGATCTTGAGACTTCTCCTGACATTATGAAGATTCTAAGTAAAGAGGGCAGCGATGTATCTCAGAGGAAATATATCAGAATTCCATTTGACTACTTGCATGAAAATACTGATGATGTCAAAGGCTTCAAAGATCGAGATAGTGAGATTGATTTTCGTCATGATAGTGACTATTCATTTCAACCACGGGATCAGAATCTTGCTAAATGTATGGTCGCAACAACTCTGAAGAGGGAAAATCATAGTTGGATGTCTGATATCAATTTTTCACCTGATGAAGATTGTATGATGGATAGTGGCTACTCTGCTGCCAAAAGATCCAGTAATTTGGAAGATAATATGTTTACCTCAGCATGGCAAGATCAGCGCTTTAAACTCTGTGCTAGTGTTAACAAGGGTTCAGCAGATACTGGAGTATCACATCATGATTTCAGTAGCAATGTAGAGGTCACCTGTGATTTAAGACAACCTTTCCTCAATAGTTGTTCCTTCCGAGGAAGGCTTCTATCTGAGAGGGATTTGCTTACAGAAAGTGGGATTAAATGTCAAAATGATTACTTTGGGAGCAAGAGAATGCAGGATGGCTCTTACAACACTTTAGACTTTTCAGAAATTGATGGCAGCAGCAAGAGAATTGATATCTCCTCAATGACTTCATCCCCAGGGATGGTTTCTAGTGCTCAGCCCTATGCCAGAGTTAGATCAAAGTTTGACCCGTTTGCAGAGTTTGACCCTCTGTCAAGAGCTAATTTGAATTCAATTACGTCCTGTAAGGGCCGTTTAGATGAGGCAAGTTTAGACATGAGCGAAGAGTATATTGGTTCGTGCAACCAGACCTTAAAAACTGAATGGTACTCTGTGACATCCAATCCGTTATCCCAAAGTACCTATTTGGATTTTGAACCTTTCTCTAATGAAGACTCAAGGGATACTGACAAATATTTTGTTGATGCTGAAGAATTTGAATGCAGCTTTGGATCGGATATAGTGTCAAATATCAGAGAACACTGCATTACAGATATAGACTGTGGACTAGGTTATAATGACAATGCTGGTTCTAGAAAATTCCTTCACCAAGACAATATAGATAGAGAGTTTTCTACTGGACGCCAAGGTAAATTAGCTTATGAGACAGACTGGTTAAGCTGGCATTCACGCAGCAAAGATAACATTTGTATTGACATGCATAATAGACATGAGGAGCAGTCAAAATATCAGGATTGTCTCAAGAATCATAGGAAGTACTTCACTTTAAATCATCCTGCGACAACAGCAGGCAAACATGATGCACAAACCTTCCATGATTCAGCTACTTATCCAGAAGCTGGCACAGTGAAGGATCTCTGTCAACCTCGTAATGGTAATCATCAAAATTTGAAGACAACTTCTGTGGAGGATTTATTCAAGATGCAAAAATTGGAAATGTTTGAACAATCTAAAAGGTCTGAGGTTCAAGCCACAGCTCCAATTAAAGAAATTATATCCATGAATCAAGATTCACTGAATTGTGGGACCAAATGGCGGAATTGTTGTCCCCAAATTACAAGCAAAAGTAAAGTGCACGGTGTTCAAGATGGAAATGATATACTTGACATATCTTCCGGATTCTTGCATCTTGCTGCTGACTCATTAGTTCCTGAATCTCTCCATAAGAACTGTCTCAAGCATTCCAGAGTTCTTCAGCAGGTGGATAAGAAATTTATTCCAGTCATGGCCGGCCAAACACTTGCTGTTATTGACCAGCATGCTGCAGATGAAAGGATCCGATTGGAGGAGCTGCGTCACAAGGTTTTGTCTGGAGATGGAGAAGCAAAGACCGTTACTTTTCTGGATTTTGAACAAGAGCTGGTGCTGCCAGAGATTGGTTACCAGTTACTGCATAACTATGCTAAAACAATAGAAGAGTGGGGTTGGCGCTGCAACATACATGCTCAAGATTCAGGGTCTTTCAAGAGGAATTTGAATTCCCTTCACAGGCAGCCAACCGTCATCACACTTATTGCGGTTCCCTGCATCTTAGGTGTCAATTTATCTGATGTAGATCTTATGGAATTTCTTCAGCAGCTTTCTGATACAGATGGATCATCAACAATGCCACCATCTGTTCTTCGAATCCTAAATTCTAAAGCATGTAGAGGTGCAATTATGTTTGGGGATTCCTTGCTACCTTCAGAGTGTTCCCTCATCGTTGATGAGCTAAAGCAGACCTCATTGTGTTTCCAATGTGCTCATGGTCGACCAACAACTGCCCCACTAGTAAATTTGGAAGCGTTGCACAAGCAAATAGCTAAGATTGCATCTTTGAATCTGAACAATGGTGCAGATCAGGCGTGGCATGGGTTACATCAACATGAGCTTAGTCTTGCACGTGCAGAACAACGTTTAAACTCGGCTAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1185

Amino Acids

134.01

Weight (kDa)

5.85

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	22 - 120	1.6e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
MutL_C	PF08676	945 - 1106	3.2e-09	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2196
AarI	CACCTGC	1 cut(s)	2830
Acc36I	ACCTGC	1 cut(s)	2830
AccB7I	CCANNNNNTGG	2 cut(s)	2480, 3017
AccI	GTMKAC	1 cut(s)	3391
AccIII	TCCGGA	1 cut(s)	2756
AciI	CCGC	5 cut(s)	16, 257, 811, 2677, 3158
AclI	AACGTT	1 cut(s)	3535
AcoI	YGGCCR	2 cut(s)	2868, 2872
AcuI	CTGAAG	5 cut(s)	1403, 2130, 2819, 3197, 3309
AcvI	CACGTG	1 cut(s)	3524
AcyI	GRCGYC	1 cut(s)	2263
AfaI	GTAC	6 cut(s)	534, 610, 942, 2009, 2041, 2399
AfeI	AGCGCT	1 cut(s)	1523
AhdI	GACNNNNNGTC	1 cut(s)	1891
AhlI	ACTAGT	1 cut(s)	3409
AjiI	CACGTC	3 cut(s)	70, 231, 316
AjnI	CCWGG	2 cut(s)	787, 1816
AjuI	GAANNNNNNNTTGG	8 cut(s)	494, 526, 636, 668, 1956, 1988, 2112, 2144
Alw21I	GWGCWC	6 cut(s)	41, 93, 555, 1837, 2718, 3385
Alw26I	GTCTC	6 cut(s)	346, 1131, 1160, 2279, 2384, 2819
Alw44I	GTGCAC	2 cut(s)	551, 2714
AlwNI	CAGNNNCTG	3 cut(s)	1565, 2480, 3031
Aor13HI	TCCGGA	1 cut(s)	2756
Aor51HI	AGCGCT	1 cut(s)	1523
AoxI	GGCC	5 cut(s)	762, 960, 1930, 2868, 2872
ApaLI	GTGCAC	2 cut(s)	551, 2714
ArsI	GACNNNNNNTTYG	4 cut(s)	1021, 1053, 2081, 2113
AseI	ATTAAT	1 cut(s)	711
Asp700I	GAANNNNTTC	3 cut(s)	383, 2399, 3210
AspLEI	GCGC	3 cut(s)	119, 1524, 3072
AspS9I	GGNCC	4 cut(s)	734, 784, 1930, 2667
AsuHPI	GGTGA	5 cut(s)	67, 688, 1416, 1597, 2219
AsuII	TTCGAA	2 cut(s)	774, 3265
AvaII	GGWCC	3 cut(s)	734, 784, 2667
BaeGI	GKGCMC	2 cut(s)	555, 2718
BaeI	ACNNNNGTAYC	4 cut(s)	1554, 1554, 1587, 1587
BamHI	GGATCC	3 cut(s)	806, 934, 2916
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	3524
BbsI	GAAGAC	3 cut(s)	914, 2079, 2540
Bbv12I	GWGCWC	6 cut(s)	41, 93, 555, 1837, 2718, 3385
BbvCI	CCTCAGC	1 cut(s)	1504
BceAI	ACGGC	1 cut(s)	1917
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	2 cut(s)	789, 1818
BciVI	GTATCC	2 cut(s)	1146, 2077
BcoDI	GTCTC	6 cut(s)	346, 1131, 1160, 2279, 2384, 2819
BcuI	ACTAGT	1 cut(s)	3409
BfaI	CTAG	9 cut(s)	75, 768, 1539, 1830, 2189, 2214, 3410, 3549, 3556
BfmI	CTRYAG	2 cut(s)	1071, 2904
BfoI	RGCGCY	2 cut(s)	1525, 3073
BfuAI	ACCTGC	1 cut(s)	2830
BfuI	GTATCC	2 cut(s)	1146, 2077
BglII	AGATCT	2 cut(s)	1159, 3196
BlpI	GCTNAGC	1 cut(s)	1836
BmcAI	AGTACT	1 cut(s)	2399
Bme1390I	CCNGG	2 cut(s)	789, 1818
Bme18I	GGWCC	3 cut(s)	734, 784, 2667
BmeRI	GACNNNNNGTC	1 cut(s)	1891
BmgBI	CACGTC	3 cut(s)	70, 231, 316
BmgT120I	GGNCC	4 cut(s)	734, 784, 1930, 2667
BmiI	GGNNCC	8 cut(s)	283, 785, 786, 808, 936, 2668, 2918, 3162
BmrFI	CCNGG	2 cut(s)	789, 1818
BmrI	ACTGGG	1 cut(s)	839
BmsI	GCATC	7 cut(s)	250, 2095, 2431, 2553, 2776, 3177, 3461
BmuI	ACTGGG	1 cut(s)	839
BpiI	GAAGAC	3 cut(s)	914, 2079, 2540
BpmI	CTGGAG	2 cut(s)	1587, 2973
Bpu10I	CCTNAGC	1 cut(s)	1504
Bpu1102I	GCTNAGC	1 cut(s)	1836
Bpu14I	TTCGAA	2 cut(s)	774, 3265
BpuEI	CTTGAG	7 cut(s)	31, 819, 1184, 2062, 2366, 2801, 3072
BsaAI	YACGTR	1 cut(s)	3524
BsaBI	GATNNNNATC	3 cut(s)	933, 1350, 3195
BsaHI	GRCGYC	1 cut(s)	2263
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	7 cut(s)	787, 788, 1340, 1648, 1816, 1817, 2266
BsaWI	WCCGGW	1 cut(s)	2756
Bse118I	RCCGGY	1 cut(s)	2870
Bse3DI	GCAATG	2 cut(s)	320, 1600
Bse8I	GATNNNNATC	3 cut(s)	933, 1350, 3195
BseAI	TCCGGA	1 cut(s)	2756
BseBI	CCWGG	2 cut(s)	789, 1818
BseDI	CCNNGG	7 cut(s)	787, 788, 1340, 1648, 1816, 1817, 2266
BseJI	GATNNNNATC	3 cut(s)	933, 1350, 3195
BseMI	GCAATG	2 cut(s)	320, 1600
BseMII	CTCAG	7 cut(s)	243, 909, 1232, 1518, 1656, 1850, 2592
BseRI	GAGGAG	6 cut(s)	19, 101, 1159, 1789, 2369, 2942
BseSI	GKGCMC	2 cut(s)	555, 2718
BseYI	CCCAGC	1 cut(s)	780
BsgI	GTGCAG	2 cut(s)	3495, 3546
BshFI	GGCC	5 cut(s)	764, 962, 1932, 2870, 2874
BsiHKAI	GWGCWC	6 cut(s)	41, 93, 555, 1837, 2718, 3385
BsiSI	CCGG	3 cut(s)	23, 2757, 2871
BslFI	GGGAC	6 cut(s)	163, 797, 805, 855, 2673, 2680
BsmAI	GTCTC	6 cut(s)	346, 1131, 1160, 2279, 2384, 2819
BsmFI	GGGAC	6 cut(s)	163, 797, 805, 855, 2673, 2680
BsmI	GAATGC	6 cut(s)	782, 839, 1734, 2126, 2305, 2821
BsnI	GGCC	5 cut(s)	764, 962, 1932, 2870, 2874
Bso31I	GGTCTC	1 cut(s)	346
Bsp119I	TTCGAA	2 cut(s)	774, 3265
Bsp1286I	GDGCHC	6 cut(s)	41, 93, 555, 1837, 2718, 3385
Bsp13I	TCCGGA	1 cut(s)	2756
Bsp1407I	TGTACA	1 cut(s)	532
Bsp1720I	GCTNAGC	1 cut(s)	1836
BspACI	CCGC	5 cut(s)	16, 257, 811, 2677, 3158
BspANI	GGCC	5 cut(s)	764, 962, 1932, 2870, 2874
BspCNI	CTCAG	7 cut(s)	244, 910, 1231, 1517, 1657, 1849, 2593
BspEI	TCCGGA	1 cut(s)	2756
BspHI	TCATGA	2 cut(s)	1315, 1579
BspLI	GGNNCC	8 cut(s)	283, 785, 786, 808, 936, 2668, 2918, 3162
BspMAI	CTGCAG	1 cut(s)	2908
BspMI	ACCTGC	1 cut(s)	2830
BspT104I	TTCGAA	2 cut(s)	774, 3265
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	320, 1600
BsrFI	RCCGGY	1 cut(s)	2870
BsrGI	TGTACA	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	2870
BssECI	CCNNGG	7 cut(s)	787, 788, 1340, 1648, 1816, 1817, 2266
BssNI	GRCGYC	1 cut(s)	2263
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	2266
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	789, 1818
Bst6I	CTCTTC	5 cut(s)	815, 1024, 1379, 1959, 3051
BstACI	GRCGYC	1 cut(s)	2263
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	3524
BstBI	TTCGAA	2 cut(s)	774, 3265
BstC8I	GCNNGC	7 cut(s)	115, 488, 2303, 2431, 2482, 2872, 2901
BstDSI	CCRYGG	1 cut(s)	1340
BstEII	GGTNACC	2 cut(s)	1603, 3020
BstH2I	RGCGCY	2 cut(s)	1525, 3073
BstHHI	GCGC	3 cut(s)	119, 1524, 3072
BstMAI	GTCTC	6 cut(s)	346, 1131, 1160, 2279, 2384, 2819
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 777, 1519, 2426, 3007, 3449, 3482
BstNI	CCWGG	2 cut(s)	789, 1818
BstNSI	RCATGY	5 cut(s)	490, 2341, 2903, 3086, 3288
BstPI	GGTNACC	2 cut(s)	1603, 3020
BstSCI	CCNGG	2 cut(s)	787, 1816
BstSFI	CTRYAG	2 cut(s)	1071, 2904
BstSLI	GKGCMC	2 cut(s)	555, 2718
BstV2I	GAAGAC	3 cut(s)	914, 2079, 2540
BstX2I	RGATCY	8 cut(s)	664, 806, 934, 1159, 1472, 2494, 2916, 3196
BstXI	CCANNNNNNTGG	1 cut(s)	1483
BstYI	RGATCY	8 cut(s)	664, 806, 934, 1159, 1472, 2494, 2916, 3196
BsuI	GTATCC	2 cut(s)	1146, 2077
BsuRI	GGCC	5 cut(s)	764, 962, 1932, 2870, 2874
BtgI	CCRYGG	1 cut(s)	1340
BtgZI	GCGATG	1 cut(s)	1224
BtrI	CACGTC	3 cut(s)	70, 231, 316
BtsI	GCAGTG	1 cut(s)	2161
BtsIMutI	CAGTG	7 cut(s)	296, 516, 545, 1062, 2161, 2493, 2654
BveI	ACCTGC	1 cut(s)	2830
Cac8I	GCNNGC	7 cut(s)	115, 488, 2303, 2431, 2482, 2872, 2901
CaiI	CAGNNNCTG	3 cut(s)	1565, 2480, 3031
CciI	TCATGA	2 cut(s)	1315, 1579
CfoI	GCGC	3 cut(s)	119, 1524, 3072
Cfr10I	RCCGGY	1 cut(s)	2870
Cfr13I	GGNCC	4 cut(s)	734, 784, 1930, 2667
CseI	GACGC	3 cut(s)	119, 2271, 2924
Csp6I	GTAC	6 cut(s)	533, 609, 941, 2008, 2040, 2398
CspCI	CAANNNNNGTGG	2 cut(s)	2526, 2561
CviQI	GTAC	6 cut(s)	533, 609, 941, 2008, 2040, 2398
DraI	TTTAAA	4 cut(s)	891, 1528, 2409, 3540
DriI	GACNNNNNGTC	1 cut(s)	1891
EaeI	YGGCCR	2 cut(s)	2868, 2872
Eam1104I	CTCTTC	5 cut(s)	815, 1024, 1379, 1959, 3051
Eam1105I	GACNNNNNGTC	1 cut(s)	1891
EarI	CTCTTC	5 cut(s)	815, 1024, 1379, 1959, 3051
EciI	GGCGGA	2 cut(s)	272, 2692
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco130I	CCWWGG	1 cut(s)	2266
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	1 cut(s)	346
Eco32I	GATATC	2 cut(s)	1414, 1795
Eco47I	GGWCC	3 cut(s)	734, 784, 2667
Eco47III	AGCGCT	1 cut(s)	1523
Eco53kI	GAGCTC	2 cut(s)	39, 91
Eco57I	CTGAAG	5 cut(s)	1403, 2130, 2819, 3197, 3309
Eco72I	CACGTG	1 cut(s)	3524
Eco91I	GGTNACC	2 cut(s)	1603, 3020
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoO109I	RGGNCCY	1 cut(s)	784
EcoO65I	GGTNACC	2 cut(s)	1603, 3020
EcoRI	GAATTC	3 cut(s)	1236, 1909, 3118
EcoRII	CCWGG	2 cut(s)	787, 1816
EcoRV	GATATC	2 cut(s)	1414, 1795
EcoT14I	CCWWGG	1 cut(s)	2266
EcoT22I	ATGCAT	1 cut(s)	2343
EcoT38I	GRGCYC	2 cut(s)	41, 93
ErhI	CCWWGG	1 cut(s)	2266
FalI	AAGNNNNNCTT	2 cut(s)	1609, 1641
FaqI	GGGAC	6 cut(s)	163, 797, 805, 855, 2673, 2680
FauI	CCCGC	1 cut(s)	818
FauNDI	CATATG	1 cut(s)	913
FblI	GTMKAC	1 cut(s)	3391
FriOI	GRGCYC	2 cut(s)	41, 93
FseI	GGCCGGCC	1 cut(s)	2874
FspBI	CTAG	9 cut(s)	75, 768, 1539, 1830, 2189, 2214, 3410, 3549, 3556
GlaI	GCGC	3 cut(s)	118, 1523, 3071
GsaI	CCCAGC	1 cut(s)	784
GsuI	CTGGAG	2 cut(s)	1587, 2973
HaeII	RGCGCY	2 cut(s)	1525, 3073
HaeIII	GGCC	5 cut(s)	764, 962, 1932, 2870, 2874
HapII	CCGG	3 cut(s)	23, 2757, 2871
HgaI	GACGC	3 cut(s)	119, 2271, 2924
HhaI	GCGC	3 cut(s)	119, 1524, 3072
Hin1I	GRCGYC	1 cut(s)	2263
Hin6I	GCGC	3 cut(s)	117, 1522, 3070
HinP1I	GCGC	3 cut(s)	117, 1522, 3070
HincII	GTYRAC	3 cut(s)	1546, 2504, 3392
HindII	GTYRAC	3 cut(s)	1546, 2504, 3392
HindIII	AAGCTT	2 cut(s)	342, 970
HpaI	GTTAAC	1 cut(s)	1546
HpaII	CCGG	3 cut(s)	23, 2757, 2871
HphI	GGTGA	5 cut(s)	67, 688, 1416, 1597, 2219
Hpy166II	GTNNAC	9 cut(s)	533, 535, 553, 1500, 1546, 2186, 2504, 2716, 3392
Hpy8I	GTNNAC	9 cut(s)	533, 535, 553, 1500, 1546, 2186, 2504, 2716, 3392
Hpy99I	CGWCG	1 cut(s)	235
HpyCH4IV	ACGT	7 cut(s)	69, 230, 315, 1054, 1919, 3523, 3535
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 777, 1519, 2426, 3007, 3449, 3482
HpySE526I	ACGT	7 cut(s)	69, 230, 315, 1054, 1919, 3523, 3535
Hsp92I	GRCGYC	1 cut(s)	2263
HspAI	GCGC	3 cut(s)	117, 1522, 3070
KflI	GGGWCCC	1 cut(s)	784
Kpn2I	TCCGGA	1 cut(s)	2756
KroI	GCCGGC	1 cut(s)	2870
KroNI	GCCGGC	1 cut(s)	2872
KspAI	GTTAAC	1 cut(s)	1546
LweI	GCATC	7 cut(s)	250, 2095, 2431, 2553, 2776, 3177, 3461
MaeI	CTAG	9 cut(s)	75, 768, 1539, 1830, 2189, 2214, 3410, 3549, 3556
MaeII	ACGT	7 cut(s)	69, 230, 315, 1054, 1919, 3523, 3535
MfeI	CAATTG	1 cut(s)	758
MflI	RGATCY	8 cut(s)	664, 806, 934, 1159, 1472, 2494, 2916, 3196
MhlI	GDGCHC	6 cut(s)	41, 93, 555, 1837, 2718, 3385
MlyI	GAGTC	2 cut(s)	2069, 2774
MmeI	TCCRAC	2 cut(s)	784, 1382
Mph1103I	ATGCAT	1 cut(s)	2343
MroI	TCCGGA	1 cut(s)	2756
MroNI	GCCGGC	1 cut(s)	2870
MroXI	GAANNNNTTC	3 cut(s)	383, 2399, 3210
MslI	CAYNNNNRTG	3 cut(s)	1320, 3039, 3504
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	3 cut(s)	23, 2757, 2871
MspR9I	CCNGG	2 cut(s)	789, 1818
MssI	GTTTAAAC	1 cut(s)	3540
MunI	CAATTG	1 cut(s)	758
Mva1269I	GAATGC	6 cut(s)	782, 839, 1734, 2126, 2305, 2821
MvaI	CCWGG	2 cut(s)	789, 1818
MwoI	GCNNNNNNNGC	7 cut(s)	263, 777, 1519, 2426, 3007, 3449, 3482
NaeI	GCCGGC	1 cut(s)	2872
NdeI	CATATG	1 cut(s)	913
NgoMIV	GCCGGC	1 cut(s)	2870
NlaIV	GGNNCC	8 cut(s)	283, 785, 786, 808, 936, 2668, 2918, 3162
NmeAIII	GCCGAG	1 cut(s)	3524
NmuCI	GTSAC	5 cut(s)	1055, 1322, 1603, 2014, 2936
NsiI	ATGCAT	1 cut(s)	2343
NspI	RCATGY	5 cut(s)	490, 2341, 2903, 3086, 3288
NspV	TTCGAA	2 cut(s)	774, 3265
PaeI	GCATGC	2 cut(s)	490, 2903
PagI	TCATGA	2 cut(s)	1315, 1579
PaqCI	CACCTGC	1 cut(s)	2830
PasI	CCCWGGG	2 cut(s)	788, 1817
PctI	GAATGC	6 cut(s)	782, 839, 1734, 2126, 2305, 2821
PdiI	GCCGGC	1 cut(s)	2872
PdmI	GAANNNNTTC	3 cut(s)	383, 2399, 3210
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	2 cut(s)	2480, 3017
PleI	GAGTC	2 cut(s)	2069, 2774
PmaCI	CACGTG	1 cut(s)	3524
PmeI	GTTTAAAC	1 cut(s)	3540
PmlI	CACGTG	1 cut(s)	3524
PpsI	GAGTC	2 cut(s)	2069, 2774
Ppu21I	YACGTR	1 cut(s)	3524
PpuMI	RGGWCCY	1 cut(s)	784
PshBI	ATTAAT	1 cut(s)	711
PsiI	TTATAA	1 cut(s)	2196
Psp124BI	GAGCTC	2 cut(s)	41, 93
Psp1406I	AACGTT	1 cut(s)	3535
Psp5II	RGGWCCY	1 cut(s)	784
Psp6I	CCWGG	2 cut(s)	787, 1816
PspCI	CACGTG	1 cut(s)	3524
PspEI	GGTNACC	2 cut(s)	1603, 3020
PspFI	CCCAGC	1 cut(s)	780
PspGI	CCWGG	2 cut(s)	787, 1816
PspN4I	GGNNCC	8 cut(s)	283, 785, 786, 808, 936, 2668, 2918, 3162
PspPI	GGNCC	4 cut(s)	734, 784, 1930, 2667
PspPPI	RGGWCCY	1 cut(s)	784
PstI	CTGCAG	1 cut(s)	2908
PstNI	CAGNNNCTG	3 cut(s)	1565, 2480, 3031
PsuI	RGATCY	8 cut(s)	664, 806, 934, 1159, 1472, 2494, 2916, 3196
PsyI	GACNNNGTC	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	797
RigI	GGCCGGCC	1 cut(s)	2874
RsaI	GTAC	6 cut(s)	534, 610, 942, 2009, 2041, 2399
RsaNI	GTAC	6 cut(s)	533, 609, 941, 2008, 2040, 2398
RseI	CAYNNNNRTG	3 cut(s)	1320, 3039, 3504
SacI	GAGCTC	2 cut(s)	41, 93
SalI	GTCGAC	1 cut(s)	3390
Sau96I	GGNCC	4 cut(s)	734, 784, 1930, 2667
ScaI	AGTACT	1 cut(s)	2399
SchI	GAGTC	2 cut(s)	2069, 2774
ScrFI	CCNGG	2 cut(s)	789, 1818
SduI	GDGCHC	6 cut(s)	41, 93, 555, 1837, 2718, 3385
SfaNI	GCATC	7 cut(s)	250, 2095, 2431, 2553, 2776, 3177, 3461
SfcI	CTRYAG	2 cut(s)	1071, 2904
SfuI	TTCGAA	2 cut(s)	774, 3265
SinI	GGWCC	3 cut(s)	734, 784, 2667
SmiMI	CAYNNNNRTG	3 cut(s)	1320, 3039, 3504
SmlI	CTYRAG	7 cut(s)	10, 834, 1163, 2077, 2381, 2816, 3087
SmoI	CTYRAG	7 cut(s)	10, 834, 1163, 2077, 2381, 2816, 3087
SpeI	ACTAGT	1 cut(s)	3409
SphI	GCATGC	2 cut(s)	490, 2903
SsiI	CCGC	5 cut(s)	16, 257, 811, 2677, 3158
SspI	AATATT	1 cut(s)	2096
SspMI	CTAG	9 cut(s)	75, 768, 1539, 1830, 2189, 2214, 3410, 3549, 3556
SstI	GAGCTC	2 cut(s)	41, 93
StyD4I	CCNGG	2 cut(s)	787, 1816
StyI	CCWWGG	1 cut(s)	2266
TaiI	ACGT	7 cut(s)	72, 233, 318, 1057, 1922, 3526, 3538
TaqI	TCGA	9 cut(s)	41, 233, 305, 579, 774, 905, 1291, 3265, 3391
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	3 cut(s)	532, 940, 2397
TscAI	CASTG	7 cut(s)	303, 523, 552, 1069, 2168, 2493, 2661
TseFI	GTSAC	5 cut(s)	1055, 1322, 1603, 2014, 2936
Tsp45I	GTSAC	5 cut(s)	1055, 1322, 1603, 2014, 2936
TspGWI	ACGGA	1 cut(s)	2016
TspRI	CASTG	7 cut(s)	303, 523, 552, 1069, 2168, 2493, 2661
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	2 cut(s)	2480, 3017
VneI	GTGCAC	2 cut(s)	551, 2714
VpaK11BI	GGWCC	3 cut(s)	734, 784, 2667
VspI	ATTAAT	1 cut(s)	711
XbaI	TCTAGA	1 cut(s)	2213
XceI	RCATGY	5 cut(s)	490, 2341, 2903, 3086, 3288
XcmI	CCANNNNNNNNNTGG	2 cut(s)	637, 3383
XmiI	GTMKAC	1 cut(s)	3391
XmnI	GAANNNNTTC	3 cut(s)	383, 2399, 3210
XspI	CTAG	9 cut(s)	75, 768, 1539, 1830, 2189, 2214, 3410, 3549, 3556
ZrmI	AGTACT	1 cut(s)	2399
Zsp2I	ATGCAT	1 cut(s)	2343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.