Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

9920847 .. 9928520

Gene Structure 7674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3234 bp

ATGAGGAGCTTGAGGCGGTTGCCGGAGGCAGTTCGGAGCTCGATTCGGTCTGGGGTGATTCTGTACGACGTGGCTAGGGTTGTGGAGGAGCTCGTCTTTAATAGCTTGGACGCTGGCGCAAGAAAGGTGTCAGTTTTCGTAGGAATTGGGACTTGTTATGTGAAAGTAGTTGATGATGGATGTGGGATTACTCGTGATGGATTGGTGTTGTTGGGAGAAAGATATGCCACGTCGAAGTTTGAACAATTTACTGAGGCGGATGCTGCAAGTGTGAGCTTTGGTTCCAGAGGGGAAGCACTGGCTTCGATTTCTGACGTGGCATTGCTTGAAGTTGTAACCAAAGCTTCTGGGAGGCCAAATGGGTATCGCAAAGTGATGAAGGGATTCAAATGTTTGTATCTTGGGGTAGATGACGATAGGAAGGATGTTGGCACAACAGTTGTTGTTCGTGATTTGTTTTACAATCAACCAGTTCGGAGGAAGTGCATGCGATCCAGCCCGAAGAAGGTATTGGACACTGTCAAGAAATGTGTACACAGGATCGCACTGGTGCACTCAATGGTTTCCTTCAAAGTTGTCGATATGGAGAGTGAGGATGAGCTTCTTCGTACCATTCCTTCTCCTTCTCCCATGACAGTATTGGAAAGTGCTTTTGGGAGCGCGGTCTCTGATGCACTTCACGAATTGAACATAAGTGATGGCAAATTAGAGCTTTCTGGATACATATCTACTCCTTGCAATAGTCTCGCCATTAAGGCCATCCAATATTTCTATATTAATTCACGGTTCATTTGCAAAGGACCAATTCACAAATTGCTTAATCAATTGGCCTCTAGCTTCGAATGCTGGGACCCAGGGACAGCTGTTGTCGGATCCCGCAACAGGAAGAGAAGTAGACCTCAAGCATTCCCAGTTTATGTCTTGAATTTAAGGTGTCCCCAATCATTCTATGATTTAAACTTTGAACCATCGAAGACATATGCTGAGTTCAAGGATTGGGGTCCTGTACTCAACTTTATTGATAAGGCCATTCAAAGCTTCTGGAAGGAAAAGATATCCTATGTAGAATCTGTTTGTCATGGAGCTGATATACGAAGAGAAGGTCAAATGTGGGAGGAACGTGACAACACTGTATCTGTAGATGAAAATTTGCTGGATGTAGATTTGTCAGAAATGTCTCCAATAAGGAAAAAGAGGAGCAGGATACAAGATCTTGAGACTTCCCCTGACATTATGAAGATTCTAAGTAAAGAGAGCAGCGATGTATCTCGGAGGAAATATATCAGAATTCCATTTGACTACTTGCATGAAAATACTGATGATGTCAAAGGCTTCAAAGATCGAGATAGTGAGATTGATTTTCGTCATGATAGTGACTATTCATTTCAACCACAGGATCAGAATCTTGCTAAATGTATGGTCGCAACAACTCTGAAGAGGGAAAATCATAGTTGGATGTCTGATATCAATTTTTCACCTGATGAAGATTATATGATGGATAGTGGCTACTCTGCTGCCAAAAGATCCAGTAATTTGGAAGATAATATGTTTACCTCAGCATGGCAAGATCAGCCCTTTAAACTCTGTGTTAGCAAGGGTTCAGCAGATACTGGAGTATCACATCATGATTTCAGTAGCAATGTAGAGGTCACCTGTGATTTAAGACAACCTTTCCTCAATAGTTGTTCCTCCCGAGGAAGGCTTCCATCTGAGAGGGATTTGCTTACAGAAAGTGGGATTAAATGTCAAAATGATTACTTTGGGAGCAAGAGAATGCAGGATGGCTCGTACAACACTTTAGACTTTTCAGAAATTGATGGCAGCAGCAAGAGAATTCGGAGTGGTTCTTATAACAGTGTAGAAGTTCCAGATATCTCGTCAATGACTTCATCCCCAGGGATGGTTTCTAGTGCTCAGCCCTATGCCAGAGTTAGATCAAAGTTTGACCCGTTTGCAGAGTTTGACCCTCTGTCAAGAGCTAATTTGAATTCAATTCCATCCTGTAAGGGCCGTTTAGATGAGGCAAGTTTAGACATGAGTGAAGAGTATATTGGTTCGTGCAACCAGACCTTAAAAACTGAATGGTACTCTGTGACATCCAATCCGTTATCCCAAAGTACCTATTTGGATTTTGAACCTTTCTCTAATGAAGATTCAGTTGAAGGGCATTACAGATATAAATATGATAAGAGGGATACTGACAAATATTTTGTTGATGCTGAAGAATTTGAATGCAGCTTTGGATTGGATATAGTGTCAAATATCAGAGAACACTGCATTACAGATATAGACTGTGGACTAGGTTATAATGACAATGCTGGTTCTAGAAAATTCCTTCACCAAGACAATATAGATAGAGAGTTTTCTACTGGACGCCAAGGTAAATTAGCTTATGAGACAGACTGGTTAAGCTGGCATTCACGCAGCAAAGATAACATTCGTATTGACATGCATAATAGACATGAGGAGCAGTCAAAATATCAGGATTGTCTCAAGAGTCATGTTTTAAACAGAAGATCGATACGAAGCCACTCAGCTCCACCATTTCCTAGAAGCAAGAGGAAGTACTTCACTTTAAATCATCCTGCGACAACAGCAGGCAAACATGATGCACAAACCTTCCATGATTCAGCTACTTATCCAGAAGCTGGCACAGTGAAGGATCTCTGTCAACCTCGTAATGGTAATCATCAAAATTTGAAGACAACTTCTGTGGAGGATTTATTGTTAGACACCAGACCAGATATTAACGCTGGTGCAAGCAAGATGCAAAAATTCGAAATGTTTGAACAATCTAAAAGGTCTGAGGTTCAAGCCACAGCTCCAATTAAAGAAATTATATCCATGAATCAAGATTCGCTGAATTGTGGGACCAAATGGCGGAATTGTTGTCCCCAAATTACAAGCAAAAGTAAAGTGCACGGTGTTCAAGATGGAAATGATATACTTGACATATCTTCGGGATTCTTGCATCTTGCTGCTGACTCATTAGTTCCTGAATCTCTCCATAAGAACTGTCTCAAGCATTCCAGAGTTCTTCAGCAGGTGGATAAGAAATTTATTCCAGTCATGGCCGGCCAAACACTTGCTGTTATTGACCAGCATGCTGCAGATGAAAGGATCCGATTGGAGGAGCTGCGTCACAAGGTTTTGTCTGGAGATGGAGAAGCAAAGACCGTTACTTTTCTGGATTTTGAACAAGAGCTGGTATGTTGTGTATTTTATGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1077

Amino Acids

121.84

Weight (kDa)

6.06

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	22 - 120	1.4e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	215 - 347	4.1e-12	DNA mismatch repair protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1851, 2307
AarI	CACCTGC	1 cut(s)	3034
Acc36I	ACCTGC	1 cut(s)	3034
AccB7I	CCANNNNNTGG	1 cut(s)	2648
AccI	GTMKAC	1 cut(s)	895
AccII	CGCG	1 cut(s)	662
AciI	CCGC	5 cut(s)	16, 257, 662, 877, 2881
AclWI	GGATC	9 cut(s)	486, 548, 867, 880, 1404, 1518, 2670, 3115, 3128
AcoI	YGGCCR	2 cut(s)	3072, 3076
AcuI	CTGAAG	3 cut(s)	1454, 2241, 3023
AcyI	GRCGYC	1 cut(s)	2374
AfaI	GTAC	8 cut(s)	65, 534, 610, 1008, 1790, 2087, 2119, 2567
AfiI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1698, 1900, 2648, 2681, 2880, 3130
AhdI	GACNNNNNGTC	1 cut(s)	1969
AjiI	CACGTC	3 cut(s)	70, 231, 316
AjnI	CCWGG	2 cut(s)	853, 1894
AjuI	GAANNNNNNNTTGG	8 cut(s)	494, 526, 636, 668, 2034, 2066, 2223, 2255
Alw21I	GWGCWC	5 cut(s)	41, 93, 555, 1915, 2922
Alw26I	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2390, 2495, 3023
Alw44I	GTGCAC	2 cut(s)	551, 2918
AlwI	GGATC	9 cut(s)	486, 548, 867, 880, 1404, 1518, 2670, 3115, 3128
AlwNI	CAGNNNCTG	2 cut(s)	1610, 2648
Ama87I	CYCGRG	1 cut(s)	1692
AoxI	GGCC	7 cut(s)	353, 756, 828, 1026, 2008, 3072, 3076
ApaLI	GTGCAC	2 cut(s)	551, 2918
ArsI	GACNNNNNNTTYG	4 cut(s)	1087, 1119, 2192, 2224
AseI	ATTAAT	1 cut(s)	777
Asp700I	GAANNNNTTC	2 cut(s)	383, 2567
AspLEI	GCGC	2 cut(s)	119, 662
AspS9I	GGNCC	5 cut(s)	800, 850, 1001, 2008, 2871
AsuHPI	GGTGA	4 cut(s)	67, 1467, 1642, 2330
AsuII	TTCGAA	2 cut(s)	840, 2778
AvaI	CYCGRG	1 cut(s)	1692
AvaII	GGWCC	4 cut(s)	800, 850, 1001, 2871
BaeGI	GKGCMC	2 cut(s)	555, 2922
BaeI	ACNNNNGTAYC	4 cut(s)	1599, 1599, 1632, 1632
BamHI	GGATCC	2 cut(s)	872, 3120
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	2 cut(s)	980, 2708
Bbv12I	GWGCWC	5 cut(s)	41, 93, 555, 1915, 2922
BbvCI	CCTCAGC	1 cut(s)	1555
BceAI	ACGGC	1 cut(s)	1995
BcgI	CGANNNNNNTGC	4 cut(s)	285, 319, 727, 761
BciT130I	CCWGG	2 cut(s)	855, 1896
BciVI	GTATCC	3 cut(s)	713, 1197, 2188
BcoDI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2390, 2495, 3023
BfaI	CTAG	6 cut(s)	75, 834, 1908, 2300, 2325, 2550
BfmI	CTRYAG	2 cut(s)	1137, 3108
BfuAI	ACCTGC	1 cut(s)	3034
BfuI	GTATCC	3 cut(s)	713, 1197, 2188
BglI	GCCNNNNNGGC	1 cut(s)	755
BglII	AGATCT	1 cut(s)	1210
BlpI	GCTNAGC	1 cut(s)	1914
BmcAI	AGTACT	1 cut(s)	2567
Bme1390I	CCNGG	2 cut(s)	855, 1896
Bme18I	GGWCC	4 cut(s)	800, 850, 1001, 2871
BmeRI	GACNNNNNGTC	1 cut(s)	1969
BmeT110I	CYCGRG	1 cut(s)	1692
BmgBI	CACGTC	3 cut(s)	70, 231, 316
BmgT120I	GGNCC	5 cut(s)	800, 850, 1001, 2008, 2871
BmiI	GGNNCC	7 cut(s)	283, 851, 852, 874, 1002, 2872, 3122
BmrFI	CCNGG	2 cut(s)	855, 1896
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	6 cut(s)	250, 661, 2206, 2599, 2757, 2980
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	980, 2708
BpmI	CTGGAG	2 cut(s)	1632, 3177
Bpu10I	CCTNAGC	1 cut(s)	1555
Bpu1102I	GCTNAGC	1 cut(s)	1914
Bpu14I	TTCGAA	2 cut(s)	840, 2778
BpuEI	CTTGAG	5 cut(s)	31, 885, 1235, 2477, 3005
Bsa29I	ATCGAT	1 cut(s)	2519
BsaBI	GATNNNNATC	2 cut(s)	724, 1401
BsaHI	GRCGYC	1 cut(s)	2374
BsaI	GGTCTC	1 cut(s)	670
BsaJI	CCNNGG	6 cut(s)	853, 854, 1693, 1894, 1895, 2377
Bsc4I	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1698, 1900, 2648, 2681, 2880, 3130
Bse118I	RCCGGY	1 cut(s)	3074
Bse1I	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1615, 2374, 2408, 3065
Bse3DI	GCAATG	2 cut(s)	320, 1645
Bse8I	GATNNNNATC	2 cut(s)	724, 1401
BseBI	CCWGG	2 cut(s)	855, 1896
BseCI	ATCGAT	1 cut(s)	2519
BseDI	CCNNGG	6 cut(s)	853, 854, 1693, 1894, 1895, 2377
BseJI	GATNNNNATC	2 cut(s)	724, 1401
BseLI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1698, 1900, 2648, 2681, 2880, 3130
BseMI	GCAATG	2 cut(s)	320, 1645
BseMII	CTCAG	7 cut(s)	243, 975, 1569, 1701, 1928, 2547, 2796
BseNI	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1615, 2374, 2408, 3065
BseRI	GAGGAG	5 cut(s)	19, 101, 1210, 2480, 3146
BseSI	GKGCMC	2 cut(s)	555, 2922
BseYI	CCCAGC	1 cut(s)	846
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	7 cut(s)	355, 758, 830, 1028, 2010, 3074, 3078
BshVI	ATCGAT	1 cut(s)	2519
BsiHKAI	GWGCWC	5 cut(s)	41, 93, 555, 1915, 2922
BsiHKCI	CYCGRG	1 cut(s)	1692
BsiSI	CCGG	2 cut(s)	23, 3075
BslFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2877, 2884
BslI	CCNNNNNNNGG	9 cut(s)	505, 882, 1560, 1698, 1900, 2648, 2681, 2880, 3130
BsmAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2390, 2495, 3023
BsmFI	GGGAC	6 cut(s)	163, 863, 871, 921, 2877, 2884
BsmI	GAATGC	6 cut(s)	848, 905, 1779, 2237, 2416, 3025
BsnI	GGCC	7 cut(s)	355, 758, 830, 1028, 2010, 3074, 3078
Bso31I	GGTCTC	1 cut(s)	670
BsoBI	CYCGRG	1 cut(s)	1692
Bsp119I	TTCGAA	2 cut(s)	840, 2778
Bsp1286I	GDGCHC	5 cut(s)	41, 93, 555, 1915, 2922
Bsp1407I	TGTACA	1 cut(s)	532
Bsp1720I	GCTNAGC	1 cut(s)	1914
BspACI	CCGC	5 cut(s)	16, 257, 662, 877, 2881
BspANI	GGCC	7 cut(s)	355, 758, 830, 1028, 2010, 3074, 3078
BspCNI	CTCAG	7 cut(s)	244, 976, 1568, 1702, 1927, 2546, 2797
BspDI	ATCGAT	1 cut(s)	2519
BspFNI	CGCG	1 cut(s)	662
BspHI	TCATGA	2 cut(s)	1366, 1624
BspLI	GGNNCC	7 cut(s)	283, 851, 852, 874, 1002, 2872, 3122
BspMAI	CTGCAG	1 cut(s)	3112
BspMI	ACCTGC	1 cut(s)	3034
BspPI	GGATC	9 cut(s)	486, 548, 867, 880, 1404, 1518, 2670, 3115, 3128
BspT104I	TTCGAA	2 cut(s)	840, 2778
BspTNI	GGTCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	320, 1645
BsrFI	RCCGGY	1 cut(s)	3074
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	9 cut(s)	303, 470, 552, 911, 1527, 1615, 2374, 2408, 3065
BssAI	RCCGGY	1 cut(s)	3074
BssECI	CCNNGG	6 cut(s)	853, 854, 1693, 1894, 1895, 2377
BssNI	GRCGYC	1 cut(s)	2374
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	2377
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	855, 1896
Bst6I	CTCTTC	4 cut(s)	881, 1090, 1430, 2037
BstACI	GRCGYC	1 cut(s)	2374
BstAUI	TGTACA	1 cut(s)	532
BstBI	TTCGAA	2 cut(s)	840, 2778
BstC8I	GCNNGC	8 cut(s)	115, 488, 2414, 2599, 2650, 2761, 3076, 3105
BstDEI	CTNAG	8 cut(s)	252, 984, 1244, 1555, 1710, 1914, 2533, 2805
BstEII	GGTNACC	1 cut(s)	1648
BstFNI	CGCG	1 cut(s)	662
BstHHI	GCGC	2 cut(s)	119, 662
BstMAI	GTCTC	7 cut(s)	670, 749, 1182, 1211, 2390, 2495, 3023
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 755, 843, 1570, 2594
BstNI	CCWGG	2 cut(s)	855, 1896
BstNSI	RCATGY	3 cut(s)	490, 2452, 3107
BstPI	GGTNACC	1 cut(s)	1648
BstSCI	CCNGG	2 cut(s)	853, 1894
BstSFI	CTRYAG	2 cut(s)	1137, 3108
BstSLI	GKGCMC	2 cut(s)	555, 2922
BstUI	CGCG	1 cut(s)	662
BstV2I	GAAGAC	2 cut(s)	980, 2708
BstX2I	RGATCY	5 cut(s)	872, 1210, 1523, 2662, 3120
BstXI	CCANNNNNNTGG	1 cut(s)	1534
BstYI	RGATCY	5 cut(s)	872, 1210, 1523, 2662, 3120
Bsu15I	ATCGAT	1 cut(s)	2519
BsuI	GTATCC	3 cut(s)	713, 1197, 2188
BsuRI	GGCC	7 cut(s)	355, 758, 830, 1028, 2010, 3074, 3078
BsuTUI	ATCGAT	1 cut(s)	2519
BtgZI	GCGATG	1 cut(s)	1275
BtrI	CACGTC	3 cut(s)	70, 231, 316
BtsI	GCAGTG	1 cut(s)	2272
BtsIMutI	CAGTG	7 cut(s)	296, 516, 545, 1128, 1861, 2272, 2661
BveI	ACCTGC	1 cut(s)	3034
Cac8I	GCNNGC	8 cut(s)	115, 488, 2414, 2599, 2650, 2761, 3076, 3105
CaiI	CAGNNNCTG	2 cut(s)	1610, 2648
CciI	TCATGA	2 cut(s)	1366, 1624
CfoI	GCGC	2 cut(s)	119, 662
Cfr10I	RCCGGY	1 cut(s)	3074
Cfr13I	GGNCC	5 cut(s)	800, 850, 1001, 2008, 2871
ClaI	ATCGAT	1 cut(s)	2519
CseI	GACGC	3 cut(s)	119, 2382, 3128
Csp6I	GTAC	8 cut(s)	64, 533, 609, 1007, 1789, 2086, 2118, 2566
CspCI	CAANNNNNGTGG	2 cut(s)	2694, 2729
CviQI	GTAC	8 cut(s)	64, 533, 609, 1007, 1789, 2086, 2118, 2566
DdeI	CTNAG	8 cut(s)	252, 984, 1244, 1555, 1710, 1914, 2533, 2805
DraI	TTTAAA	4 cut(s)	957, 1579, 2508, 2577
DriI	GACNNNNNGTC	1 cut(s)	1969
EaeI	YGGCCR	2 cut(s)	3072, 3076
Eam1104I	CTCTTC	4 cut(s)	881, 1090, 1430, 2037
Eam1105I	GACNNNNNGTC	1 cut(s)	1969
EarI	CTCTTC	4 cut(s)	881, 1090, 1430, 2037
EciI	GGCGGA	2 cut(s)	272, 2896
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco130I	CCWWGG	1 cut(s)	2377
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	1 cut(s)	670
Eco32I	GATATC	3 cut(s)	1056, 1465, 1873
Eco47I	GGWCC	4 cut(s)	800, 850, 1001, 2871
Eco53kI	GAGCTC	2 cut(s)	39, 91
Eco57I	CTGAAG	3 cut(s)	1454, 2241, 3023
Eco88I	CYCGRG	1 cut(s)	1692
Eco91I	GGTNACC	1 cut(s)	1648
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoO109I	RGGNCCY	2 cut(s)	850, 1001
EcoO65I	GGTNACC	1 cut(s)	1648
EcoRI	GAATTC	3 cut(s)	1287, 1833, 1987
EcoRII	CCWGG	2 cut(s)	853, 1894
EcoRV	GATATC	3 cut(s)	1056, 1465, 1873
EcoT14I	CCWWGG	1 cut(s)	2377
EcoT22I	ATGCAT	1 cut(s)	2454
EcoT38I	GRGCYC	2 cut(s)	41, 93
ErhI	CCWWGG	1 cut(s)	2377
FalI	AAGNNNNNCTT	2 cut(s)	1654, 1686
FaqI	GGGAC	6 cut(s)	163, 863, 871, 921, 2877, 2884
FauI	CCCGC	1 cut(s)	884
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	895
FriOI	GRGCYC	2 cut(s)	41, 93
FseI	GGCCGGCC	1 cut(s)	3078
FspBI	CTAG	6 cut(s)	75, 834, 1908, 2300, 2325, 2550
GlaI	GCGC	2 cut(s)	118, 661
GsaI	CCCAGC	1 cut(s)	850
GsuI	CTGGAG	2 cut(s)	1632, 3177
HaeIII	GGCC	7 cut(s)	355, 758, 830, 1028, 2010, 3074, 3078
HapII	CCGG	2 cut(s)	23, 3075
HgaI	GACGC	3 cut(s)	119, 2382, 3128
HhaI	GCGC	2 cut(s)	119, 662
Hin1I	GRCGYC	1 cut(s)	2374
Hin6I	GCGC	2 cut(s)	117, 660
HinP1I	GCGC	2 cut(s)	117, 660
HincII	GTYRAC	1 cut(s)	2672
HindII	GTYRAC	1 cut(s)	2672
HindIII	AAGCTT	2 cut(s)	342, 1036
HpaII	CCGG	2 cut(s)	23, 3075
HphI	GGTGA	4 cut(s)	67, 1467, 1642, 2330
Hpy166II	GTNNAC	8 cut(s)	533, 535, 553, 896, 1551, 2297, 2672, 2920
Hpy8I	GTNNAC	8 cut(s)	533, 535, 553, 896, 1551, 2297, 2672, 2920
Hpy99I	CGWCG	2 cut(s)	71, 235
HpyCH4IV	ACGT	4 cut(s)	69, 230, 315, 1120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 755, 843, 1570, 2594
HpyF3I	CTNAG	8 cut(s)	252, 984, 1244, 1555, 1710, 1914, 2533, 2805
HpySE526I	ACGT	4 cut(s)	69, 230, 315, 1120
Hsp92I	GRCGYC	1 cut(s)	2374
HspAI	GCGC	2 cut(s)	117, 660
KflI	GGGWCCC	1 cut(s)	850
KroI	GCCGGC	1 cut(s)	3074
KroNI	GCCGGC	1 cut(s)	3076
LweI	GCATC	6 cut(s)	250, 661, 2206, 2599, 2757, 2980
MaeI	CTAG	6 cut(s)	75, 834, 1908, 2300, 2325, 2550
MaeII	ACGT	4 cut(s)	69, 230, 315, 1120
MaeIII	GTNAC	7 cut(s)	334, 1121, 1373, 1648, 2092, 3140, 3178
MfeI	CAATTG	1 cut(s)	824
MflI	RGATCY	5 cut(s)	872, 1210, 1523, 2662, 3120
MhlI	GDGCHC	5 cut(s)	41, 93, 555, 1915, 2922
MlyI	GAGTC	2 cut(s)	2506, 2978
MmeI	TCCRAC	2 cut(s)	850, 1433
Mph1103I	ATGCAT	1 cut(s)	2454
MroNI	GCCGGC	1 cut(s)	3074
MroXI	GAANNNNTTC	2 cut(s)	383, 2567
MslI	CAYNNNNRTG	1 cut(s)	1371
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	2 cut(s)	23, 3075
MspR9I	CCNGG	2 cut(s)	855, 1896
MunI	CAATTG	1 cut(s)	824
Mva1269I	GAATGC	6 cut(s)	848, 905, 1779, 2237, 2416, 3025
MvaI	CCWGG	2 cut(s)	855, 1896
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	5 cut(s)	263, 755, 843, 1570, 2594
NaeI	GCCGGC	1 cut(s)	3076
NdeI	CATATG	1 cut(s)	979
NgoMIV	GCCGGC	1 cut(s)	3074
NlaIV	GGNNCC	7 cut(s)	283, 851, 852, 874, 1002, 2872, 3122
NmuCI	GTSAC	5 cut(s)	1121, 1373, 1648, 2092, 3140
NsiI	ATGCAT	1 cut(s)	2454
NspI	RCATGY	3 cut(s)	490, 2452, 3107
NspV	TTCGAA	2 cut(s)	840, 2778
PaeI	GCATGC	2 cut(s)	490, 3107
PagI	TCATGA	2 cut(s)	1366, 1624
PaqCI	CACCTGC	1 cut(s)	3034
PasI	CCCWGGG	2 cut(s)	854, 1895
PctI	GAATGC	6 cut(s)	848, 905, 1779, 2237, 2416, 3025
PdiI	GCCGGC	1 cut(s)	3076
PdmI	GAANNNNTTC	2 cut(s)	383, 2567
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	2648
PleI	GAGTC	2 cut(s)	2505, 2978
PpsI	GAGTC	2 cut(s)	2505, 2978
PpuMI	RGGWCCY	2 cut(s)	850, 1001
PshBI	ATTAAT	1 cut(s)	777
PsiI	TTATAA	2 cut(s)	1851, 2307
Psp124BI	GAGCTC	2 cut(s)	41, 93
Psp5II	RGGWCCY	2 cut(s)	850, 1001
Psp6I	CCWGG	2 cut(s)	853, 1894
PspEI	GGTNACC	1 cut(s)	1648
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	2 cut(s)	853, 1894
PspN4I	GGNNCC	7 cut(s)	283, 851, 852, 874, 1002, 2872, 3122
PspPI	GGNCC	5 cut(s)	800, 850, 1001, 2008, 2871
PspPPI	RGGWCCY	2 cut(s)	850, 1001
PstI	CTGCAG	1 cut(s)	3112
PstNI	CAGNNNCTG	2 cut(s)	1610, 2648
PsuI	RGATCY	5 cut(s)	872, 1210, 1523, 2662, 3120
PsyI	GACNNNGTC	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	863
RigI	GGCCGGCC	1 cut(s)	3078
RsaI	GTAC	8 cut(s)	65, 534, 610, 1008, 1790, 2087, 2119, 2567
RsaNI	GTAC	8 cut(s)	64, 533, 609, 1007, 1789, 2086, 2118, 2566
RseI	CAYNNNNRTG	1 cut(s)	1371
SacI	GAGCTC	2 cut(s)	41, 93
Sau96I	GGNCC	5 cut(s)	800, 850, 1001, 2008, 2871
ScaI	AGTACT	1 cut(s)	2567
SchI	GAGTC	2 cut(s)	2506, 2978
ScrFI	CCNGG	2 cut(s)	855, 1896
SduI	GDGCHC	5 cut(s)	41, 93, 555, 1915, 2922
SfaNI	GCATC	6 cut(s)	250, 661, 2206, 2599, 2757, 2980
SfcI	CTRYAG	2 cut(s)	1137, 3108
SfuI	TTCGAA	2 cut(s)	840, 2778
SinI	GGWCC	4 cut(s)	800, 850, 1001, 2871
SmiMI	CAYNNNNRTG	1 cut(s)	1371
SmlI	CTYRAG	5 cut(s)	10, 900, 1214, 2492, 3020
SmoI	CTYRAG	5 cut(s)	10, 900, 1214, 2492, 3020
SphI	GCATGC	2 cut(s)	490, 3107
SsiI	CCGC	5 cut(s)	16, 257, 662, 877, 2881
SspI	AATATT	2 cut(s)	767, 2207
SspMI	CTAG	6 cut(s)	75, 834, 1908, 2300, 2325, 2550
SstI	GAGCTC	2 cut(s)	41, 93
StyD4I	CCNGG	2 cut(s)	853, 1894
StyI	CCWWGG	1 cut(s)	2377
TaiI	ACGT	4 cut(s)	72, 233, 318, 1123
TaqI	TCGA	9 cut(s)	41, 233, 305, 579, 840, 971, 1342, 2519, 2778
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	3 cut(s)	532, 1006, 2565
TscAI	CASTG	7 cut(s)	303, 523, 552, 1135, 1861, 2279, 2661
TseFI	GTSAC	5 cut(s)	1121, 1373, 1648, 2092, 3140
Tsp45I	GTSAC	5 cut(s)	1121, 1373, 1648, 2092, 3140
TspGWI	ACGGA	1 cut(s)	2094
TspRI	CASTG	7 cut(s)	303, 523, 552, 1135, 1861, 2279, 2661
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	1 cut(s)	2648
VneI	GTGCAC	2 cut(s)	551, 2918
VpaK11BI	GGWCC	4 cut(s)	800, 850, 1001, 2871
VspI	ATTAAT	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	2324
XceI	RCATGY	3 cut(s)	490, 2452, 3107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	895
XmnI	GAANNNNTTC	2 cut(s)	383, 2567
XspI	CTAG	6 cut(s)	75, 834, 1908, 2300, 2325, 2550
ZrmI	AGTACT	1 cut(s)	2567
Zsp2I	ATGCAT	1 cut(s)	2454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.