Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

9320855 .. 9328877

Gene Structure 8023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1114700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3717 bp

ATGAGGGGCGTAAAGCCGTTGCCGGAGGCGGTTCGTAGCTCGGTGCGTTCTGGAGTTGTCCTGTACGACCTGACGAGCGTTGTGGAGGAGCTGATTTTCAATAGCTTGGATGCCAGTGCAACGAAGGTATCGGTTTTCGTAGGTGTTGGGACATACTATGTAAAAGTAGTGGATGATGGGCGCGGGATTACTCGTGATGGATTGGTGTTGGTGGGAGAAAGATATGCAACGTCAAAGTTTGATCATTCTACTAAGACGGATGCTGGAACTGGGAGCTTTGGTTTCCGAGGAGAAGCATTGGCTTCCATTTCTGATGTTTCATTGTTAGAAATCTTAACAAAAGCTTATGGGAGGGCAAATGGGTATCGCAAAGTCATGAAGGGATGCAAATGTTTGTATCTTGGAGTAGATGATGACAGGAAGGATGTGGGCACTACAGTTGTTGTTCGTGATCTGTTTTACAATCAACCAGTTCGGAGGAAGTACATGCAATCCAGCCCCAAGAAAGTATTGGACTCTGTCAACAAATGTGTACATCGGATTGCCCTTGTGCACTCAGATGTTTCTTTTAAAGTTGTAGATATTGAAAGTGAGGATGAGCTTCTTCGTACAATTCCTTCTCCCTCTCCCTTGACACTATTGAAAAGGACTTTTGGGACTGAGGTCGCCGACACTCTTCATGCATTGAACACAAGTGATGGCAAATTACAGCTTTCTGGATACATATCTAGCCCTTGCAATAATGTCACCAATAAGGCCTTCCAGTATATCTATATTAACTTGCGGTTCGTTTGCAAAGGGCCAATTCATAAATTGCTTAATCAGCTGGCCAATACTTTTGAAATCTGGGATCCAGGTAAGGCTATTGATGGGTCCCAAAATAGGAAGCGAAGTAGGCCTCAGGCATTTGCAGCTTATGTTTTGAATTTAAGCTGTCCCCAAATATTTTATGATTTAACCTTTGAACCATCAAAGACATATGTGGAGTTCAAGGATTGGGCTCCGGTACTCGCCTTTATTGATAAGGCCATTCAGAAATTCTGGAAGGAAAAGATGCCTGATGGAGAATCTGGTTGTCATGGAGCTGATATTTTCATAGAAGATCAAATGCGGAAGAAAGGTGGCAACATTAAATCTACAGATGAAAATTTACTTGATGGAGATTTGTCAGAACTCTCTAAGTTTGGGAAAAAAGAGAGCAGGCAAATTTGTCAGGCTTCTCCTGACATTATGGATGTGTTAATTCAAGAAGAGAACCGTACATCTCAGAAGAAACATGTCAGAATGCCATTTGAATATACTGAAGATTTCAATGGCTTCCAAGGGCAACTTGTTGGGATTGAATTGAGTCCTCACACTGATTATTCTTTTCAATCACGGGATGATTGTCTAGACAAATGCATGCTAACAACTCAACAGAAGGAAAATCATCCTTGGATGTCGGATATCAAACATTTCTCTGATGAAGATTATATCCTTGAGAATAGATCCACTGCTGCAGAAAGATCCAGTAATGTGGAGGACAATATCTTTAGCTCAGAATGGAAAGATGAGCCCTTTAAAGTTGATCCCAGTGTTGGCATTGGTTCAGCAAGTAGTAGAGTATCTTATGACCGGCATGAATTCGATAGCGATGTAGAGTTCACCCAGAATCTAGTACAACCGTTCCTCAAGAGTTGTTCCTCAAAAGAAAGTTTTCTATATGAGAGGGATCTGTGTGCAGATAATGGGATTAAATATCAAAGTGATGGCTTCGGGAACAAGAGAAGGCGGGGTGGCTCTTCTAACAGTGGTGAAATTCCAGAAATTGACGGCAGCAAGAGTTTTGATTTCTTGTGGCCAGAGGAGGAATCAAGTGCTCGGCCCTTAACCAAAATTTTGACAAAATTTGACCTGTCTACAGAGTTTGATTCTCCGTCAAGAGCTTTTATAAAGTCACGTCCACACTATGGGGAGCAGTTTTATGAAGAAAGTTCAGTCATGAATGTAGAGAACATTGGTTCCTGCCATAGGACCTTAAATAATGATTGGTGCTCGTTGATCTCGAATTCGTTATCCCAAAACACGTATTTGGACTATGAACCTGTCTCTGATATAAATGCAGTTGAAGGACATTATAGATCTGTTAAAAGGGCTACTAATAGGCATTTTGTGGATGGTGAAGAAAAGGACTGCACATATGGTTATGGTATAATGTCAAAGAGGTCCAGCCGAGAACACTGCACTACGCATACAGACCATGAACTGGATTTTAGTGATTATTCAAGTTCAGGAAAATTCTTTCAGCCACACAATTTAGATGGCGAGTTTTCTCCCGAATGTTCGGATATATTAGCTGACGAGACAGGTTGGTCATATTTGCATGCCCGCAGAAAAGATAACATGGGTATTGAGTTGTATAAAAAACAAAAAGATAATTTTAGAGATCAAGATTGTCTACAAAATCAATCTTCCATAGGAAGATCGAAAAGAAGCCATTCAGCACCACCATTCTATAGAAGCAAGAGGAGGTACTCTACTTTATGTCATCCTTTGACAACAACAACAGGCAAACCTGATGCACAAACCTTTCATGATGCACCTACTTATCCAGTTAGCAAGATGAAGGATCTCCATAAACCTCCTGGTGGTTGCCATCTAAATTTGAACTCGAGTTCTCTCGAGGATTTCCCACTAGCCATCAGATCAGATATTGAGAAATCTCAAGATATAAAGGCTGGTGTAAACAAGACGCACAAAGTTGAAATGTTTGAACAGTCTAAATGTTCTGAGATTCAAGCCACTGCTCCAATTAAAGAATTTATCTCCAAGGATCAAAACTCCCTGAACTGTGGGACTAAATGGCGGAATTGCTGTCCCCAGATCACGAGCTCAAGTAAAACACAAGGTCTTGATGATCAAAACATACTTGACATCTCTTCTGGATTCTTGCATCTCTCTTCTGACTCATTAGTTCCTGAATCTATCAACAAGAACTGCCTCAGTGATTGCAGAGTTCTTCGCCAGGTGGATAAGAAATATATTGCAGTTATAGCCGGTACTACACTTGCTGTCATTGACCAGCATGCTGCAGATGAAAGGATTCGGTTGGAGGAGTTGCGTCAGAAGGTGCTATGTGGAGAAGGAGAAGCAAAGGCGATTACTTTTCTGGATGTTGAACAAGAGTTGGTGCTGCCAGAGATTGGCTACCAGTTACTGCATAACTATGCAAAACCAGTTCAAGAGTGGGGTTGGCTCTGCAACACACATACTGAAGGTTCAGGGTCCTTCAAGAGGAATTTGAATCTCCTTCACAGGCAGCCAACAGCCATCACACTTATTGCGGTACCCTGCATCTTAGGCGTCAATTTATCTGACTTGGATCTTATGGAATTTCTTCAGCAGCTTGCTGATACAGATGGATCATCCACAACGCCACCATCAGTTCTTCGAATCCTAAACTCTAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCCTTGCTTCCTTCCGAGTGTAACCTCATCGTTGAAGAGCTAAAGCAGACTTCTCTATGTTTCCAATGTGCTCATGGTCGACCAACAACTGCCCCGCTTGTCAACTTGGAGGCGTTGCATAAGCAAATAGCTAAGATTGCGTCCTCAAATGATGGTGCGGATCAGTTGTGGCATGGGTTAGGTCGACATGAACTTAGTCTCGCACGTGCGGAAAAACGTTTAAACTTGGCTAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1239

Amino Acids

139.08

Weight (kDa)

6.01

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	22 - 120	1.9e-10	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	23 - 95	6.5e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	216 - 347	6.7e-11	DNA mismatch repair protein, C-terminal domain
MutL_C	PF08676	1001 - 1040	4.8e-06	MutL C terminal dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1931
AasI	GACNNNNNNGTC	1 cut(s)	2350
Acc65I	GGTACC	1 cut(s)	3325
AccB1I	GGYRCC	1 cut(s)	3325
AccB7I	CCANNNNNTGG	3 cut(s)	1949, 2245, 3182
AccI	GTMKAC	4 cut(s)	1898, 2437, 3556, 3661
AccII	CGCG	1 cut(s)	183
AclI	AACGTT	1 cut(s)	3694
AcoI	YGGCCR	2 cut(s)	828, 1838
AcuI	CTGAAG	3 cut(s)	1323, 3273, 3362
AcvI	CACGTG	1 cut(s)	3683
AcyI	GRCGYC	1 cut(s)	3342
AfiI	CCNNNNNNNGG	8 cut(s)	882, 1577, 1949, 2010, 2245, 2627, 3182, 3273
AflIII	ACRYGT	2 cut(s)	1276, 2064
AjiI	CACGTC	1 cut(s)	1940
AjnI	CCWGG	3 cut(s)	853, 2623, 3003
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AloI	GAACNNNNNNTCC	2 cut(s)	1985, 2017
Alw21I	GWGCWC	5 cut(s)	555, 1861, 2036, 2873, 3550
Alw26I	GTCTC	3 cut(s)	2092, 2336, 3680
Alw44I	GTGCAC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	3196
Ama87I	CYCGRG	2 cut(s)	2650, 2660
AoxI	GGCC	7 cut(s)	756, 800, 828, 896, 1026, 1838, 1862
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	7 cut(s)	911, 1496, 1815, 3068, 3172, 3298, 3382
Asp700I	GAANNNNTTC	4 cut(s)	1695, 2476, 3081, 3375
Asp718I	GGTACC	1 cut(s)	3325
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	6 cut(s)	800, 873, 1863, 2013, 2205, 3264
AsuHPI	GGTGA	4 cut(s)	739, 1636, 1805, 2171
AsuII	TTCGAA	1 cut(s)	3430
AvaI	CYCGRG	2 cut(s)	2650, 2660
AvaII	GGWCC	4 cut(s)	873, 2013, 2205, 3264
AxyI	CCTNAGG	1 cut(s)	900
BaeGI	GKGCMC	2 cut(s)	434, 555
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BalI	TGGCCA	2 cut(s)	830, 1840
BamHI	GGATCC	1 cut(s)	850
BanI	GGYRCC	1 cut(s)	3325
BanII	GRGCYC	3 cut(s)	1003, 1557, 2873
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	2 cut(s)	192, 2866
BbrPI	CACGTG	1 cut(s)	3683
Bbv12I	GWGCWC	5 cut(s)	555, 1861, 2036, 2873, 3550
BbvI	GCAGC	7 cut(s)	923, 1483, 1827, 3055, 3159, 3310, 3394
BceAI	ACGGC	1 cut(s)	1828
BcgI	CGANNNNNNTGC	2 cut(s)	2202, 2236
BciT130I	CCWGG	3 cut(s)	855, 2625, 3005
BciVI	GTATCC	1 cut(s)	713
BclI	TGATCA	2 cut(s)	241, 2896
BcoDI	GTCTC	3 cut(s)	2092, 2336, 3680
BfaI	CTAG	6 cut(s)	729, 1391, 1655, 2675, 3708, 3715
BfmI	CTRYAG	6 cut(s)	435, 1137, 1497, 1899, 2494, 3069
BfuI	GTATCC	1 cut(s)	713
BglII	AGATCT	1 cut(s)	2120
BisI	GCNGC	7 cut(s)	912, 1497, 1816, 3069, 3173, 3299, 3383
BlsI	GCNGC	7 cut(s)	913, 1498, 1817, 3070, 3174, 3300, 3384
Bme1390I	CCNGG	3 cut(s)	855, 2625, 3005
Bme18I	GGWCC	4 cut(s)	873, 2013, 2205, 3264
BmeT110I	CYCGRG	2 cut(s)	2650, 2660
BmgBI	CACGTC	1 cut(s)	1940
BmgT120I	GGNCC	6 cut(s)	800, 873, 1863, 2013, 2205, 3264
BmiI	GGNNCC	7 cut(s)	852, 874, 875, 1002, 2002, 3265, 3327
BmrFI	CCNGG	3 cut(s)	855, 2625, 3005
BmrI	ACTGGG	2 cut(s)	279, 1566
BmsI	GCATC	8 cut(s)	100, 250, 374, 1044, 2548, 2566, 2941, 3342
BmuI	ACTGGG	2 cut(s)	279, 1566
BoxI	GACNNNNGTC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	3430
BpuEI	CTTGAG	4 cut(s)	1499, 1655, 2688, 2857
BsaAI	YACGTR	2 cut(s)	2067, 3683
BsaBI	GATNNNNATC	1 cut(s)	724
BsaHI	GRCGYC	1 cut(s)	3342
BsaJI	CCNNGG	4 cut(s)	286, 1321, 1433, 2808
BsaWI	WCCGGW	1 cut(s)	1003
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	8 cut(s)	882, 1577, 1949, 2010, 2245, 2627, 3182, 3273
Bse118I	RCCGGY	2 cut(s)	1614, 3035
Bse21I	CCTNAGG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	724
BseBI	CCWGG	3 cut(s)	855, 2625, 3005
BseDI	CCNNGG	4 cut(s)	286, 1321, 1433, 2808
BseJI	GATNNNNATC	1 cut(s)	724
BseLI	CCNNNNNNNGG	8 cut(s)	882, 1577, 1949, 2010, 2245, 2627, 3182, 3273
BseMII	CTCAG	7 cut(s)	570, 651, 914, 1280, 1551, 2760, 2995
BseRI	GAGGAG	5 cut(s)	101, 303, 1859, 2521, 3107
BseSI	GKGCMC	2 cut(s)	434, 555
BseXI	GCAGC	7 cut(s)	923, 1483, 1827, 3055, 3159, 3310, 3394
BsgI	GTGCAG	3 cut(s)	1740, 2158, 2206
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	7 cut(s)	758, 802, 830, 898, 1028, 1840, 1864
BshNI	GGYRCC	1 cut(s)	3325
BsiHKAI	GWGCWC	5 cut(s)	555, 1861, 2036, 2873, 3550
BsiHKCI	CYCGRG	2 cut(s)	2650, 2660
BsiSI	CCGG	4 cut(s)	23, 1004, 1615, 3036
BslFI	GGGAC	6 cut(s)	163, 670, 859, 921, 2841, 2848
BslI	CCNNNNNNNGG	8 cut(s)	882, 1577, 1949, 2010, 2245, 2627, 3182, 3273
BsmAI	GTCTC	3 cut(s)	2092, 2336, 3680
BsmFI	GGGAC	6 cut(s)	163, 670, 859, 921, 2841, 2848
BsmI	GAATGC	1 cut(s)	1290
BsnI	GGCC	7 cut(s)	758, 802, 830, 898, 1028, 1840, 1864
BsoBI	CYCGRG	2 cut(s)	2650, 2660
Bsp119I	TTCGAA	1 cut(s)	3430
Bsp1286I	GDGCHC	8 cut(s)	434, 555, 1003, 1557, 1861, 2036, 2873, 3550
Bsp1407I	TGTACA	1 cut(s)	532
BspANI	GGCC	7 cut(s)	758, 802, 830, 898, 1028, 1840, 1864
BspCNI	CTCAG	7 cut(s)	569, 652, 913, 1279, 1550, 2761, 2994
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	3 cut(s)	375, 1980, 2572
BspLI	GGNNCC	7 cut(s)	852, 874, 875, 1002, 2002, 3265, 3327
BspMAI	CTGCAG	2 cut(s)	1501, 3073
BspQI	GCTCTTC	2 cut(s)	1786, 3507
BspT104I	TTCGAA	1 cut(s)	3430
BspT107I	GGYRCC	1 cut(s)	3325
BsrFI	RCCGGY	2 cut(s)	1614, 3035
BsrGI	TGTACA	1 cut(s)	532
BssAI	RCCGGY	2 cut(s)	1614, 3035
BssECI	CCNNGG	4 cut(s)	286, 1321, 1433, 2808
BssNI	GRCGYC	1 cut(s)	3342
BssSI	CACGAG	2 cut(s)	192, 2866
BssT1I	CCWWGG	3 cut(s)	1321, 1433, 2808
Bst2BI	CACGAG	2 cut(s)	192, 2866
Bst2UI	CCWGG	3 cut(s)	855, 2625, 3005
Bst4CI	ACNGT	6 cut(s)	439, 1259, 1665, 1790, 2757, 2831
Bst6I	CTCTTC	6 cut(s)	681, 1245, 1786, 2923, 2944, 3507
BstACI	GRCGYC	1 cut(s)	3342
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	2 cut(s)	2067, 3683
BstBI	TTCGAA	1 cut(s)	3430
BstC8I	GCNNGC	8 cut(s)	828, 1202, 1403, 2364, 2368, 3066, 3387, 3451
BstENI	CCTNNNNNAGG	2 cut(s)	2008, 3271
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	183
BstMAI	GTCTC	3 cut(s)	2092, 2336, 3680
BstMWI	GCNNNNNNNGC	6 cut(s)	823, 895, 911, 3032, 3339, 3614
BstNI	CCWGG	3 cut(s)	855, 2625, 3005
BstNSI	RCATGY	6 cut(s)	490, 1280, 1405, 2366, 3068, 3453
BstPAI	GACNNNNGTC	1 cut(s)	662
BstSCI	CCNGG	3 cut(s)	853, 2623, 3003
BstSFI	CTRYAG	6 cut(s)	435, 1137, 1497, 1899, 2494, 3069
BstSLI	GKGCMC	2 cut(s)	434, 555
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	7 cut(s)	923, 1483, 1827, 3055, 3159, 3310, 3394
BstX2I	RGATCY	7 cut(s)	850, 1487, 1505, 1711, 2120, 2608, 3361
BstXI	CCANNNNNNTGG	1 cut(s)	1516
BstYI	RGATCY	7 cut(s)	850, 1487, 1505, 1711, 2120, 2608, 3361
Bsu36I	CCTNAGG	1 cut(s)	900
BsuI	GTATCC	1 cut(s)	713
BsuRI	GGCC	7 cut(s)	758, 802, 830, 898, 1028, 1840, 1864
BtgZI	GCGATG	1 cut(s)	1647
BtrI	CACGTC	1 cut(s)	1940
BtsI	GCAGTG	3 cut(s)	1491, 2218, 2781
BtsIMutI	CAGTG	8 cut(s)	121, 1356, 1491, 1579, 1795, 2218, 2781, 2989
Cac8I	GCNNGC	8 cut(s)	828, 1202, 1403, 2364, 2368, 3066, 3387, 3451
CaiI	CAGNNNCTG	1 cut(s)	3196
CciI	TCATGA	3 cut(s)	375, 1980, 2572
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	2 cut(s)	1614, 3035
Cfr13I	GGNCC	6 cut(s)	800, 873, 1863, 2013, 2205, 3264
CseI	GACGC	4 cut(s)	2740, 3089, 3331, 3606
DraI	TTTAAA	3 cut(s)	571, 1561, 3699
DrdI	GACNNNNNNGTC	1 cut(s)	2350
DseDI	GACNNNNNNGTC	1 cut(s)	2350
EaeI	YGGCCR	2 cut(s)	828, 1838
Eam1104I	CTCTTC	6 cut(s)	681, 1245, 1786, 2923, 2944, 3507
EarI	CTCTTC	6 cut(s)	681, 1245, 1786, 2923, 2944, 3507
EciI	GGCGGA	1 cut(s)	2860
Ecl136II	GAGCTC	1 cut(s)	2871
Eco130I	CCWWGG	3 cut(s)	1321, 1433, 2808
Eco147I	AGGCCT	2 cut(s)	758, 898
Eco24I	GRGCYC	3 cut(s)	1003, 1557, 2873
Eco32I	GATATC	1 cut(s)	1447
Eco47I	GGWCC	4 cut(s)	873, 2013, 2205, 3264
Eco53kI	GAGCTC	1 cut(s)	2871
Eco57I	CTGAAG	3 cut(s)	1323, 3273, 3362
Eco72I	CACGTG	1 cut(s)	3683
Eco81I	CCTNAGG	1 cut(s)	900
Eco88I	CYCGRG	2 cut(s)	2650, 2660
EcoICRI	GAGCTC	1 cut(s)	2871
EcoNI	CCTNNNNNAGG	2 cut(s)	2008, 3271
EcoO109I	RGGNCCY	3 cut(s)	873, 2013, 3264
EcoRI	GAATTC	2 cut(s)	1622, 2047
EcoRII	CCWGG	3 cut(s)	853, 2623, 3003
EcoRV	GATATC	1 cut(s)	1447
EcoT14I	CCWWGG	3 cut(s)	1321, 1433, 2808
EcoT22I	ATGCAT	2 cut(s)	685, 1403
EcoT38I	GRGCYC	3 cut(s)	1003, 1557, 2873
ErhI	CCWWGG	3 cut(s)	1321, 1433, 2808
FalI	AAGNNNNNCTT	2 cut(s)	1314, 1346
FaqI	GGGAC	6 cut(s)	163, 670, 859, 921, 2841, 2848
FauI	CCCGC	4 cut(s)	176, 1764, 2375, 3579
FauNDI	CATATG	2 cut(s)	979, 2179
FbaI	TGATCA	2 cut(s)	241, 2896
FblI	GTMKAC	4 cut(s)	1898, 2437, 3556, 3661
Fnu4HI	GCNGC	7 cut(s)	912, 1497, 1816, 3069, 3173, 3299, 3383
FriOI	GRGCYC	3 cut(s)	1003, 1557, 2873
Fsp4HI	GCNGC	7 cut(s)	912, 1497, 1816, 3069, 3173, 3299, 3383
FspBI	CTAG	6 cut(s)	729, 1391, 1655, 2675, 3708, 3715
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	7 cut(s)	912, 1497, 1816, 3069, 3173, 3299, 3383
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	7 cut(s)	758, 802, 830, 898, 1028, 1840, 1864
HapII	CCGG	4 cut(s)	23, 1004, 1615, 3036
HgaI	GACGC	4 cut(s)	2740, 3089, 3331, 3606
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	3342
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	4 cut(s)	523, 3557, 3580, 3662
HindII	GTYRAC	4 cut(s)	523, 3557, 3580, 3662
HindIII	AAGCTT	1 cut(s)	342
HpaII	CCGG	4 cut(s)	23, 1004, 1615, 3036
HphI	GGTGA	4 cut(s)	739, 1636, 1805, 2171
HpyCH4III	ACNGT	6 cut(s)	439, 1259, 1665, 1790, 2757, 2831
HpyCH4IV	ACGT	5 cut(s)	230, 1939, 2066, 3682, 3694
HpyF10VI	GCNNNNNNNGC	6 cut(s)	823, 895, 911, 3032, 3339, 3614
HpySE526I	ACGT	5 cut(s)	230, 1939, 2066, 3682, 3694
Hsp92I	GRCGYC	1 cut(s)	3342
HspAI	GCGC	1 cut(s)	181
KflI	GGGWCCC	1 cut(s)	873
KpnI	GGTACC	1 cut(s)	3329
Ksp22I	TGATCA	2 cut(s)	241, 2896
LguI	GCTCTTC	2 cut(s)	1786, 3507
LmnI	GCTCC	6 cut(s)	88, 273, 1006, 1082, 1954, 2791
Lsp1109I	GCAGC	7 cut(s)	923, 1483, 1827, 3055, 3159, 3310, 3394
LweI	GCATC	8 cut(s)	100, 250, 374, 1044, 2548, 2566, 2941, 3342
MaeI	CTAG	6 cut(s)	729, 1391, 1655, 2675, 3708, 3715
MaeII	ACGT	5 cut(s)	230, 1939, 2066, 3682, 3694
MaeIII	GTNAC	4 cut(s)	745, 1935, 3192, 3497
MflI	RGATCY	7 cut(s)	850, 1487, 1505, 1711, 2120, 2608, 3361
MhlI	GDGCHC	8 cut(s)	434, 555, 1003, 1557, 1861, 2036, 2873, 3550
MlsI	TGGCCA	2 cut(s)	830, 1840
MluNI	TGGCCA	2 cut(s)	830, 1840
MlyI	GAGTC	3 cut(s)	509, 1357, 2939
MmeI	TCCRAC	2 cut(s)	1422, 3069
Mox20I	TGGCCA	2 cut(s)	830, 1840
Mph1103I	ATGCAT	2 cut(s)	685, 1403
MroXI	GAANNNNTTC	4 cut(s)	1695, 2476, 3081, 3375
MscI	TGGCCA	2 cut(s)	830, 1840
MslI	CAYNNNNRTG	2 cut(s)	558, 3204
Msp20I	TGGCCA	2 cut(s)	830, 1840
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	4 cut(s)	23, 1004, 1615, 3036
MspR9I	CCNGG	3 cut(s)	855, 2625, 3005
MssI	GTTTAAAC	1 cut(s)	3699
Mva1269I	GAATGC	1 cut(s)	1290
MvaI	CCWGG	3 cut(s)	855, 2625, 3005
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	6 cut(s)	823, 895, 911, 3032, 3339, 3614
NdeI	CATATG	2 cut(s)	979, 2179
NlaIV	GGNNCC	7 cut(s)	852, 874, 875, 1002, 2002, 3265, 3327
NmeAIII	GCCGAG	2 cut(s)	1840, 2237
NmuCI	GTSAC	2 cut(s)	745, 1935
NsiI	ATGCAT	2 cut(s)	685, 1403
NspI	RCATGY	6 cut(s)	490, 1280, 1405, 2366, 3068, 3453
NspV	TTCGAA	1 cut(s)	3430
PaeI	GCATGC	4 cut(s)	1405, 2366, 3068, 3453
PaeR7I	CTCGAG	2 cut(s)	2650, 2660
PagI	TCATGA	3 cut(s)	375, 1980, 2572
PceI	AGGCCT	2 cut(s)	758, 898
PciI	ACATGT	1 cut(s)	1276
PciSI	GCTCTTC	2 cut(s)	1786, 3507
PcsI	WCGNNNNNNNCGW	1 cut(s)	2042
PctI	GAATGC	1 cut(s)	1290
PdmI	GAANNNNTTC	4 cut(s)	1695, 2476, 3081, 3375
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	3 cut(s)	1949, 2245, 3182
PkrI	GCNGC	7 cut(s)	913, 1498, 1817, 3070, 3174, 3300, 3384
PleI	GAGTC	3 cut(s)	509, 1356, 2939
PmaCI	CACGTG	1 cut(s)	3683
PmeI	GTTTAAAC	1 cut(s)	3699
PmlI	CACGTG	1 cut(s)	3683
PpsI	GAGTC	3 cut(s)	509, 1356, 2939
Ppu21I	YACGTR	2 cut(s)	2067, 3683
PpuMI	RGGWCCY	3 cut(s)	873, 2013, 3264
PscI	ACATGT	1 cut(s)	1276
PshAI	GACNNNNGTC	1 cut(s)	662
PsiI	TTATAA	1 cut(s)	1931
Psp124BI	GAGCTC	1 cut(s)	2873
Psp1406I	AACGTT	1 cut(s)	3694
Psp5II	RGGWCCY	3 cut(s)	873, 2013, 3264
Psp6I	CCWGG	3 cut(s)	853, 2623, 3003
PspCI	CACGTG	1 cut(s)	3683
PspGI	CCWGG	3 cut(s)	853, 2623, 3003
PspN4I	GGNNCC	7 cut(s)	852, 874, 875, 1002, 2002, 3265, 3327
PspPI	GGNCC	6 cut(s)	800, 873, 1863, 2013, 2205, 3264
PspPPI	RGGWCCY	3 cut(s)	873, 2013, 3264
PspXI	VCTCGAGB	1 cut(s)	2650
PstI	CTGCAG	2 cut(s)	1501, 3073
PstNI	CAGNNNCTG	1 cut(s)	3196
PsuI	RGATCY	7 cut(s)	850, 1487, 1505, 1711, 2120, 2608, 3361
PsyI	GACNNNGTC	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	826
RseI	CAYNNNNRTG	2 cut(s)	558, 3204
SacI	GAGCTC	1 cut(s)	2873
SalI	GTCGAC	2 cut(s)	3555, 3660
SapI	GCTCTTC	2 cut(s)	1786, 3507
SatI	GCNGC	7 cut(s)	912, 1497, 1816, 3069, 3173, 3299, 3383
Sau96I	GGNCC	6 cut(s)	800, 873, 1863, 2013, 2205, 3264
SchI	GAGTC	3 cut(s)	509, 1357, 2939
ScrFI	CCNGG	3 cut(s)	855, 2625, 3005
SduI	GDGCHC	8 cut(s)	434, 555, 1003, 1557, 1861, 2036, 2873, 3550
SfaNI	GCATC	8 cut(s)	100, 250, 374, 1044, 2548, 2566, 2941, 3342
SfcI	CTRYAG	6 cut(s)	435, 1137, 1497, 1899, 2494, 3069
Sfr274I	CTCGAG	2 cut(s)	2650, 2660
SfuI	TTCGAA	1 cut(s)	3430
SinI	GGWCC	4 cut(s)	873, 2013, 2205, 3264
SlaI	CTCGAG	2 cut(s)	2650, 2660
SmiMI	CAYNNNNRTG	2 cut(s)	558, 3204
SmlI	CTYRAG	6 cut(s)	1478, 1670, 2650, 2660, 2703, 2872
SmoI	CTYRAG	6 cut(s)	1478, 1670, 2650, 2660, 2703, 2872
SphI	GCATGC	4 cut(s)	1405, 2366, 3068, 3453
SseBI	AGGCCT	2 cut(s)	758, 898
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	6 cut(s)	729, 1391, 1655, 2675, 3708, 3715
SstI	GAGCTC	1 cut(s)	2873
StuI	AGGCCT	2 cut(s)	758, 898
StyD4I	CCNGG	3 cut(s)	853, 2623, 3003
StyI	CCWWGG	3 cut(s)	1321, 1433, 2808
TaaI	ACNGT	6 cut(s)	439, 1259, 1665, 1790, 2757, 2831
TaiI	ACGT	5 cut(s)	233, 1942, 2069, 3685, 3697
TaqI	TCGA	8 cut(s)	1626, 2045, 2465, 2651, 2661, 3430, 3556, 3661
TatI	WGTACW	3 cut(s)	483, 532, 1657
TscAI	CASTG	8 cut(s)	121, 1363, 1498, 1579, 1795, 2225, 2788, 2989
TseFI	GTSAC	2 cut(s)	745, 1935
TseI	GCWGC	7 cut(s)	911, 1496, 1815, 3068, 3172, 3298, 3382
Tsp45I	GTSAC	2 cut(s)	745, 1935
TspGWI	ACGGA	2 cut(s)	272, 1905
TspRI	CASTG	8 cut(s)	121, 1363, 1498, 1579, 1795, 2225, 2788, 2989
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	3 cut(s)	1949, 2245, 3182
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	4 cut(s)	873, 2013, 2205, 3264
XagI	CCTNNNNNAGG	2 cut(s)	2008, 3271
XbaI	TCTAGA	1 cut(s)	1390
XceI	RCATGY	6 cut(s)	490, 1280, 1405, 2366, 3068, 3453
XcmI	CCANNNNNNNNNTGG	4 cut(s)	508, 2621, 3222, 3548
XhoI	CTCGAG	2 cut(s)	2650, 2660
XmiI	GTMKAC	4 cut(s)	1898, 2437, 3556, 3661
XmnI	GAANNNNTTC	4 cut(s)	1695, 2476, 3081, 3375
XspI	CTAG	6 cut(s)	729, 1391, 1655, 2675, 3708, 3715
Zsp2I	ATGCAT	2 cut(s)	685, 1403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.