Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451989.1

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Reverse (-)

67 .. 1696

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451989.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgaggagcttgaggcggttgccggaggcagttcggagctcgattcggtctggggtgattctgtatgacgtagctagggttgtggaggagctcgtctttaatagcttggacgctggcgcaagaaaggtgtcagttttcgtaggaattgggacttgttatgtgaaagtagttgatgatggatgtgggattactcgtgatggattggtgttgttgggagatagatatgccacgtcgaagtttgaacaatttactgaggcggatgctgcaagtgtgagctttggttccagaggggaagcactggcttcgatttctgacgtggcattgcttgaagttgtaaccaaaacttctgggagaccaaatgggtatcgcaaagtgatgaagggattcaaatgtttgtatcttggggtagatgacgataggaaggatgttggcacaacagttgttgttcgtgatttgttttacaatcaaccagttcggaggaagtgcatgcgatccagcccgaagaaggtattggacactgtcaagaaatgtgtacacaggatcgcactggtgcactcaatggtttccttcaaagttgtcgatatggagagtgaggatgagcttcttcgtaccattccttctccttctcccatgacattattggaaagtgcttttgggagcgaggtctctgatgcacttcacaaattgaacataagtgatggcaaattagagctttctggatacatatctactccttgcaatagtctcgccattaaggtaggaagattggtattaattgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

260

Amino Acids

28.44

Weight (kDa)

8.98

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	16, 257
AclWI	GGATC	2 cut(s)	486, 548
AfaI	GTAC	2 cut(s)	534, 610
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	242, 329, 388, 571, 688
AjiI	CACGTC	2 cut(s)	231, 316
AjuI	GAANNNNNNNTTGG	4 cut(s)	494, 526, 636, 668
AluBI	AGCT	8 cut(s)	9, 39, 74, 91, 105, 276, 601, 712
AluI	AGCT	8 cut(s)	9, 39, 74, 91, 105, 276, 601, 712
Alw21I	GWGCWC	3 cut(s)	41, 93, 555
Alw26I	GTCTC	3 cut(s)	346, 670, 749
Alw44I	GTGCAC	1 cut(s)	551
AlwI	GGATC	2 cut(s)	486, 548
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	263
AseI	ATTAAT	1 cut(s)	773
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	555
BanII	GRGCYC	2 cut(s)	41, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	601, 633
BauI	CACGAG	1 cut(s)	192
Bbv12I	GWGCWC	3 cut(s)	41, 93, 555
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	3 cut(s)	170, 191, 692
BcgI	CGANNNNNNTGC	4 cut(s)	285, 319, 727, 761
BciVI	GTATCC	1 cut(s)	713
BcoDI	GTCTC	3 cut(s)	346, 670, 749
BfaI	CTAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	713
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmgBI	CACGTC	2 cut(s)	231, 316
BmiI	GGNNCC	1 cut(s)	283
BmsI	GCATC	2 cut(s)	250, 661
BpuEI	CTTGAG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	724
BsaI	GGTCTC	2 cut(s)	346, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	3 cut(s)	303, 470, 552
Bse3DI	GCAATG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	724
BseGI	GGATG	4 cut(s)	185, 265, 430, 601
BseJI	GATNNNNATC	1 cut(s)	724
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	3 cut(s)	303, 470, 552
BseRI	GAGGAG	2 cut(s)	19, 101
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	250
BsiHKAI	GWGCWC	3 cut(s)	41, 93, 555
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	3 cut(s)	346, 670, 749
BsmFI	GGGAC	1 cut(s)	163
Bso31I	GGTCTC	2 cut(s)	346, 670
Bsp1286I	GDGCHC	3 cut(s)	41, 93, 555
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	491, 540
BspACI	CCGC	2 cut(s)	16, 257
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	2 cut(s)	486, 548
BspTNI	GGTCTC	2 cut(s)	346, 670
BsrDI	GCAATG	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	303, 470, 552
BssMI	GATC	2 cut(s)	491, 540
BssSI	CACGAG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	439, 520
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	115, 488
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	4 cut(s)	185, 265, 430, 601
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	494, 543
BstMAI	GTCTC	3 cut(s)	346, 670, 749
BstMBI	GATC	2 cut(s)	491, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	490
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	713
BtrI	CACGTC	2 cut(s)	231, 316
BtsCI	GGATG	4 cut(s)	185, 265, 430, 601
BtsIMutI	CAGTG	3 cut(s)	296, 516, 545
Cac8I	GCNNGC	2 cut(s)	115, 488
CfoI	GCGC	1 cut(s)	119
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	533, 609
CviAII	CATG	2 cut(s)	487, 631
CviQI	GTAC	2 cut(s)	533, 609
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	493, 542
DpnII	GATC	2 cut(s)	491, 540
EciI	GGCGGA	1 cut(s)	272
Ecl136II	GAGCTC	2 cut(s)	39, 91
Eco24I	GRGCYC	2 cut(s)	41, 93
Eco31I	GGTCTC	2 cut(s)	346, 670
Eco53kI	GAGCTC	2 cut(s)	39, 91
EcoICRI	GAGCTC	2 cut(s)	39, 91
EcoT38I	GRGCYC	2 cut(s)	41, 93
FaeI	CATG	2 cut(s)	490, 634
FaiI	YATR	8 cut(s)	66, 159, 225, 488, 584, 632, 692, 725
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	486, 630
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	4 cut(s)	192, 272, 437, 608
FriOI	GRGCYC	2 cut(s)	41, 93
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	490, 634
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	43, 58, 384
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	533, 535, 553
Hpy188I	TCNGA	4 cut(s)	36, 313, 477, 670
Hpy188III	TCNNGA	5 cut(s)	194, 285, 449, 523, 717
Hpy8I	GTNNAC	3 cut(s)	533, 535, 553
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	6 cut(s)	373, 415, 499, 577, 627, 633
HpyCH4III	ACNGT	2 cut(s)	439, 520
HpyCH4IV	ACGT	3 cut(s)	69, 230, 315
HpyCH4V	TGCA	5 cut(s)	266, 486, 553, 674, 738
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	3 cut(s)	69, 230, 315
Hsp92II	CATG	2 cut(s)	490, 634
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	491, 540
LmnI	GCTCC	4 cut(s)	6, 36, 88, 657
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	2 cut(s)	250, 661
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	3 cut(s)	69, 230, 315
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	493, 542
MboI	GATC	2 cut(s)	491, 540
MboII	GAAGA	3 cut(s)	514, 596, 774
MhlI	GDGCHC	3 cut(s)	41, 93, 555
MluCI	AATT	5 cut(s)	144, 245, 683, 704, 774
MnlI	CCTC	8 cut(s)	6, 19, 79, 247, 281, 471, 586, 655
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	3 cut(s)	99, 753, 773
MspI	CCGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	2 cut(s)	491, 540
NlaIII	CATG	2 cut(s)	490, 634
NlaIV	GGNNCC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	490
PaeI	GCATGC	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	3 cut(s)	43, 58, 384
PflFI	GACNNNGTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	773
Psp124BI	GAGCTC	2 cut(s)	41, 93
PspN4I	GGNNCC	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	518
RsaI	GTAC	2 cut(s)	534, 610
RsaNI	GTAC	2 cut(s)	533, 609
SacI	GAGCTC	2 cut(s)	41, 93
SaqAI	TTAA	3 cut(s)	99, 753, 773
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	491, 540
SduI	GDGCHC	3 cut(s)	41, 93, 555
SfaNI	GCATC	2 cut(s)	250, 661
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	5 cut(s)	144, 245, 683, 704, 774
SsiI	CCGC	2 cut(s)	16, 257
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	2 cut(s)	41, 93
TaaI	ACNGT	2 cut(s)	439, 520
TaiI	ACGT	3 cut(s)	72, 233, 318
TaqI	TCGA	4 cut(s)	41, 233, 305, 579
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	5 cut(s)	144, 245, 683, 704, 774
TatI	WGTACW	1 cut(s)	532
TfiI	GAWTC	3 cut(s)	43, 58, 384
Tru1I	TTAA	3 cut(s)	99, 753, 773
Tru9I	TTAA	3 cut(s)	99, 753, 773
TscAI	CASTG	3 cut(s)	303, 523, 552
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	392
TspRI	CASTG	3 cut(s)	303, 523, 552
Tth111I	GACNNNGTC	1 cut(s)	518
VneI	GTGCAC	1 cut(s)	551
VspI	ATTAAT	1 cut(s)	773
XceI	RCATGY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.