Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

6175300 .. 6182619

Gene Structure 7320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08960.22

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3591 bp

ATGAGGGGCGTAAAGCCGTTGCCGGAGGCGGTTAGTAGCTCGGTGCGTTCTGGAGTTGTCCTGTACGACCTGACGAGCGTTGTGGAGGAGCTGATTTTCAATAGCTTGGATGCCCGTGCAACGAAGACGGATGGTGGAACTGGGAGCTTTGGTTTCCGAGGAGAAGCATTGGCTTCCATTTCTGATGTGTCATTGTTAGAAATCTTAACAAAAGCTTATGGGAGGGCAAATGGGTATCGCAAAGTCATGAAGGGATGCAAATGTTTGTATCTTGGAATAGATGATGACAGGAAGGATGTGGGCACTACAGTTGTTGTTCGTGATCTGTTTTACAATCAACCAGTTCGGAGGAAGTACATGCAATCCAGCCCCAAGAAAGTATTGGACTCTGTCAACAAATGTGTACATCGGATTGCCCTTGTGCACTCAGATGTTTCTTTTAAAGTTGTAGATATTGAAAGTGAGAATGAGCTTCTTCGTACAATTCCTTCTCCCTCTCCCTTGACACTATTGAAAAGGACTTTTGGGACTGTGGTTGCCGACGCTCTTCATGAATTGAACATAAGTGATGGCAAATTACAGCTTTCTGGATACATATCTAGCCCTTGCAATAATCTCGCCAATAAGGCCTTCCAATATATCTATATTAACTTGCGGTTTGTTTGCAAAGGGCCAATTCATAAATTGCTTAATCAGCTGGCCAATACTTTTGAAATCTGGGATCCAGGTAAGGCTCTTGATGGGTCCCAATATAGGAAGCGAAGTAGGCCTCAGGCATTTGCAGCTTATGTTTTGAATTTAAGCTGTCCCCGAATATTTTATGATTTAACCTTTGAACCATCAAAGACGTATGTGGAGTTCAAGGATTGGGCTCCGGTACTCGCCTTTATTGATAAGGCCATTCAGAAATTCTGGAAGGAAAAGATGCCTGATGGAGAATCTGGTTGTCATGGAGCTGATATTTTCGTAGAAGATCAAATGCGGAAGAAAGGTGGCAACATTAAATCTACAGATGAAAATTTACTTGATGGAGATTTGTCAGAACCCTCTAAGTTCGGGAAAAAAAAGAGCAGGCCAATTTGTCAGGCTTCTCCCAACATTATGGATGTGTTAATTCAAGAAGAGAACCGTACATCTCAGAAGAAACATGTCAGAATGCCATTTGAATATAATGAAGATTTCAATGGCTTCCAAGGGCAACATATTGGGATTGAATTCAGTCCTCACACTGATTATTCTTTTCAGTCACGGGATGATTGTCTAGACAAATGCAAGCTAACAACTCGACAGAAGGAAAATCATCCTTGGATGTCGGATATCAAACATTTCTCTGATGAAGATTATATCCTTGAGAATAGATCCGCTGCTGCAGAAAGATCCAGCAATGTGGAGGACAATATCTTTAGCTCAGAATGGAAAGATGAGCCCTTTAAAGTTGATCCCAGTGTTGGCACTGGTTCAGCAAGTAGTAGAGTATCTTATGACCAGCATGAATTCGATAGCGATGTAGAGTTCACCCAGAATCTAATACAACCGTTCCTCAAGAGTTGTTCCTCAAAAGAAAGTTTTCTGTATGAGAGGGATCTGTGTGCAGATAATGGGATTAGATATCAAAGTGATGGCTTCAGGAACAAGAGAAGGCGGGGTGGCTCTTATAACAGTGTAGAAATTCCAGAAATTGACGGCAGCAAGAGTTTTGATTTCTTGTGGCCAGAGGAGGAATCAAGTGCTTGGCCCTTAACCAAAGTTTTGACAAAATTTGACCTGTCTACAGAGTTTGATTCTCCGTCAAGAGCTTTTATAAAGTCACTCCCACACTATGGGGAGCAGTTTTATGAAGAAAGTTCAGTCATGAATGTAGAGAACATTGGTTCCTGCCATAGGACCTTAAATAATGATTGGTGCTCCGTGATCTCGAATTCGTTATCCCAAAACACGTATTTGGACCATGAACCTGTCTCTGATATAAATGCAGCTGAAGGACATTATAGATCTGTTAAAAGGTCTACTAATAGGCATTTTGTGGATAGTGAAGAAAAGGACTGCGCATTTGGGTATGGTATAATATCAAAGAGGTCCAGCCGAGAACACTGCACTACACATACAGACCATGAACTGGATTTTAGTGATTATTCAAGTTCAGGAAAATTCTTTCAGCCACACAATTTAGATGGCAAGTTTTCTCCCGAATGTCCGGATATATTATCTGATGAGACAGGTTGGTCATCTTTGTATGCCCGCAGAAAAGATAACATGGATATTGAGTTGTATAAAAAACAAAAAGATCAGTTTAGAGATCAAGATTGTCTACAAAATCAATCTTCCATAGGAAGATCGAAAAGAAGCCATTCAGCACCACCATTCTATAGAAGCAAGAGGAGGTACTCTACTTTATGTCATCCTTTGACAACAATAGCAGGCAAACCTGATGCACAAACCTTTCATGATGCACTTACTTGTCCAGAAGTTAGCAAGATGAAGGATCTCCATAAACCTCCTGGTGGTTGCCATCTAAATTTGAACCCGAGTTCTCTCGAGGATTTCCCACTAGCCATCAGATCAGATACTGAGAAATCTCAAGATAGAAAAGCTGGGGTAAACAAGACGCACAAAGTTGAAATGTTTGAACAGTCTAAATGTTCTGAGATTCAAGCCACTGCTCCAATTAAAGAATTTATCTCCAAGGATCAAAACTCCCTGAACTGTGGGACTAAATGGCGGAATTGCTGTCCCCAGATCACGAGCTCAAGTAAAACGCAAGGTCTTGATGATCAAAACATACTTGACATCTCTTCTGGATTCTTGCATCTCTCTTCTGACTCATTAGTTCCTGAATCTATCAACAAGAACTGCCTCAGTGACTGCAGAGTTCTTCGCCAGGTGGATAAGAAATATATTGCAGTTACAGCCGGTACTACACTTGCTGTTATTGACCAGCACGCTGCAGATGAAAGGATTCGGTTGGAGGAGTTGCGTCAGAAGGTGCTAAGTGGAGAAGGAGAAGCAAAGGCGATTACTTTTCTGGATGTCGAACAAGAGTTGGTGCTGCCAGAGATTGGCTACCAGTTACTGCATAACTATGCAAAACCAGTTGAAGAGTGGGGTTGGCTCTGCAACACACATGCTGAAGGTTCAGGGTCCTTCAACAGGAATTTGAATCTCCTTCACAGGCAGCCAACAGCCATCACACTTATTGCGGTACCCTGCATCTTAGGTGTCAATTTATCTGACTTGGATCTTATGGAATTTCTTCAGCAGCTTGCTGATACAGATGGATCATCCACAACGCCACCATCAGTTCTTCGATTCCTAAATTCTAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCCTTGCTTCCTTCTGAGTGTAACCTCATCGTTGAAGAGCTAAAGCAGACTTCTCTATGTTTCCAATGTGCTCATGGTCGACCAACAACTGCCCCGCTTGTCAACTTGGAGGCGTTGCATAAGCAAATAGCTAAGATTACGTCCTCAAATGATGGTACCGATCAGTTGTGGCATGGGTTAGGTCGACATGAACTTAGTCTTGCACGTGCGGAAAAACGTTTAAACTTGGCTAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

1197

Amino Acids

134.78

Weight (kDa)

6.12

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1656, 1802
AasI	GACNNNNNNGTC	1 cut(s)	2221
Acc16I	TGCGCA	1 cut(s)	2047
Acc65I	GGTACC	2 cut(s)	3199, 3506
AccB1I	GGYRCC	2 cut(s)	3199, 3506
AccB7I	CCANNNNNTGG	3 cut(s)	1820, 2116, 3056
AccI	GTMKAC	5 cut(s)	1769, 2006, 2308, 3430, 3535
AccIII	TCCGGA	1 cut(s)	2194
AclI	AACGTT	1 cut(s)	3568
AcoI	YGGCCR	2 cut(s)	699, 1709
AcuI	CTGAAG	4 cut(s)	1609, 1998, 3147, 3236
AcvI	CACGTG	1 cut(s)	3557
AfiI	CCNNNNNNNGG	8 cut(s)	753, 1448, 1820, 1881, 2116, 2501, 3056, 3147
AflIII	ACRYGT	2 cut(s)	1147, 1935
AjnI	CCWGG	3 cut(s)	724, 2497, 2877
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AloI	GAACNNNNNNTCC	2 cut(s)	1856, 1888
Alw21I	GWGCWC	4 cut(s)	426, 1907, 2747, 3424
Alw26I	GTCTC	2 cut(s)	1963, 2207
Alw44I	GTGCAC	1 cut(s)	422
AlwNI	CAGNNNCTG	3 cut(s)	2567, 2862, 3070
Ama87I	CYCGRG	2 cut(s)	2524, 2534
Aor13HI	TCCGGA	1 cut(s)	2194
AoxI	GGCC	8 cut(s)	627, 671, 699, 767, 897, 1073, 1709, 1733
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	9 cut(s)	782, 1364, 1367, 1686, 1973, 2942, 3046, 3172, 3256
ArsI	GACNNNNNNTTYG	2 cut(s)	2033, 2065
Asp700I	GAANNNNTTC	4 cut(s)	1566, 2347, 2955, 3249
Asp718I	GGTACC	2 cut(s)	3199, 3506
AspLEI	GCGC	1 cut(s)	2048
AspS9I	GGNCC	7 cut(s)	671, 744, 1734, 1884, 1945, 2076, 3138
AsuHPI	GGTGA	1 cut(s)	1507
AvaI	CYCGRG	2 cut(s)	2524, 2534
AvaII	GGWCC	5 cut(s)	744, 1884, 1945, 2076, 3138
AxyI	CCTNAGG	1 cut(s)	771
BaeGI	GKGCMC	2 cut(s)	305, 426
BalI	TGGCCA	2 cut(s)	701, 1711
BamHI	GGATCC	1 cut(s)	721
BanI	GGYRCC	2 cut(s)	3199, 3506
BanII	GRGCYC	3 cut(s)	874, 1428, 2747
BarI	GAAGNNNNNNTAC	2 cut(s)	472, 504
BauI	CACGAG	1 cut(s)	2740
BbrPI	CACGTG	1 cut(s)	3557
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	4 cut(s)	426, 1907, 2747, 3424
BbvI	GCAGC	9 cut(s)	794, 1351, 1354, 1698, 1985, 2929, 3033, 3184, 3268
BceAI	ACGGC	1 cut(s)	1699
BcgI	CGANNNNNNTGC	4 cut(s)	598, 632, 2073, 2107
BciT130I	CCWGG	3 cut(s)	726, 2499, 2879
BciVI	GTATCC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	2770
BcoDI	GTCTC	2 cut(s)	1963, 2207
BfaI	CTAG	5 cut(s)	600, 1262, 2549, 3582, 3589
BfmI	CTRYAG	7 cut(s)	306, 1008, 1368, 1770, 2365, 2863, 2943
BfuI	GTATCC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	1991
BisI	GCNGC	9 cut(s)	783, 1365, 1368, 1687, 1974, 2943, 3047, 3173, 3257
BlsI	GCNGC	9 cut(s)	784, 1366, 1369, 1688, 1975, 2944, 3048, 3174, 3258
Bme1390I	CCNGG	3 cut(s)	726, 2499, 2879
Bme18I	GGWCC	5 cut(s)	744, 1884, 1945, 2076, 3138
BmeT110I	CYCGRG	2 cut(s)	2524, 2534
BmgT120I	GGNCC	7 cut(s)	671, 744, 1734, 1884, 1945, 2076, 3138
BmiI	GGNNCC	8 cut(s)	723, 745, 746, 873, 1873, 3139, 3201, 3508
BmrFI	CCNGG	3 cut(s)	726, 2499, 2879
BmrI	ACTGGG	2 cut(s)	150, 1437
BmsI	GCATC	7 cut(s)	100, 245, 915, 2419, 2437, 2815, 3216
BmuI	ACTGGG	2 cut(s)	150, 1437
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	4 cut(s)	1370, 1526, 2562, 2731
BsaAI	YACGTR	2 cut(s)	1938, 3557
BsaBI	GATNNNNATC	1 cut(s)	595
BsaJI	CCNNGG	4 cut(s)	157, 1192, 1304, 2682
BsaWI	WCCGGW	2 cut(s)	874, 2194
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	8 cut(s)	753, 1448, 1820, 1881, 2116, 2501, 3056, 3147
Bse118I	RCCGGY	1 cut(s)	2909
Bse1I	ACTGG	7 cut(s)	145, 341, 1443, 1459, 2121, 3064, 3089
Bse21I	CCTNAGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	1390
Bse8I	GATNNNNATC	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	2194
BseBI	CCWGG	3 cut(s)	726, 2499, 2879
BseDI	CCNNGG	4 cut(s)	157, 1192, 1304, 2682
BseJI	GATNNNNATC	1 cut(s)	595
BseLI	CCNNNNNNNGG	8 cut(s)	753, 1448, 1820, 1881, 2116, 2501, 3056, 3147
BseMI	GCAATG	1 cut(s)	1390
BseMII	CTCAG	8 cut(s)	441, 785, 1151, 1422, 2559, 2634, 2869, 3357
BseNI	ACTGG	7 cut(s)	145, 341, 1443, 1459, 2121, 3064, 3089
BseRI	GAGGAG	5 cut(s)	101, 174, 1730, 2392, 2981
BseSI	GKGCMC	2 cut(s)	305, 426
BseXI	GCAGC	9 cut(s)	794, 1351, 1354, 1698, 1985, 2929, 3033, 3184, 3268
BseYI	CCCAGC	1 cut(s)	2591
BsgI	GTGCAG	2 cut(s)	1611, 2077
BshFI	GGCC	8 cut(s)	629, 673, 701, 769, 899, 1075, 1711, 1735
BshNI	GGYRCC	2 cut(s)	3199, 3506
BsiHKAI	GWGCWC	4 cut(s)	426, 1907, 2747, 3424
BsiHKCI	CYCGRG	2 cut(s)	2524, 2534
BsiSI	CCGG	4 cut(s)	23, 875, 2195, 2910
BslFI	GGGAC	5 cut(s)	541, 730, 792, 2715, 2722
BslI	CCNNNNNNNGG	8 cut(s)	753, 1448, 1820, 1881, 2116, 2501, 3056, 3147
BsmAI	GTCTC	2 cut(s)	1963, 2207
BsmFI	GGGAC	5 cut(s)	541, 730, 792, 2715, 2722
BsmI	GAATGC	1 cut(s)	1161
BsnI	GGCC	8 cut(s)	629, 673, 701, 769, 899, 1075, 1711, 1735
BsoBI	CYCGRG	2 cut(s)	2524, 2534
Bsp1286I	GDGCHC	7 cut(s)	305, 426, 874, 1428, 1907, 2747, 3424
Bsp13I	TCCGGA	1 cut(s)	2194
Bsp1407I	TGTACA	1 cut(s)	403
BspANI	GGCC	8 cut(s)	629, 673, 701, 769, 899, 1075, 1711, 1735
BspCNI	CTCAG	8 cut(s)	440, 784, 1150, 1421, 2560, 2635, 2868, 3358
BspEI	TCCGGA	1 cut(s)	2194
BspHI	TCATGA	4 cut(s)	246, 550, 1851, 2443
BspLI	GGNNCC	8 cut(s)	723, 745, 746, 873, 1873, 3139, 3201, 3508
BspMAI	CTGCAG	3 cut(s)	1372, 2867, 2947
BspQI	GCTCTTC	2 cut(s)	552, 3381
BspT107I	GGYRCC	2 cut(s)	3199, 3506
BsrDI	GCAATG	1 cut(s)	1390
BsrFI	RCCGGY	1 cut(s)	2909
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	7 cut(s)	145, 341, 1443, 1459, 2121, 3064, 3089
BssAI	RCCGGY	1 cut(s)	2909
BssECI	CCNNGG	4 cut(s)	157, 1192, 1304, 2682
BssSI	CACGAG	1 cut(s)	2740
BssT1I	CCWWGG	3 cut(s)	1192, 1304, 2682
Bst2BI	CACGAG	1 cut(s)	2740
Bst2UI	CCWGG	3 cut(s)	726, 2499, 2879
Bst4CI	ACNGT	7 cut(s)	310, 532, 1130, 1536, 1661, 2631, 2705
Bst6I	CTCTTC	6 cut(s)	552, 1116, 2797, 2818, 3090, 3381
BstAUI	TGTACA	1 cut(s)	403
BstBAI	YACGTR	2 cut(s)	1938, 3557
BstC8I	GCNNGC	8 cut(s)	699, 1073, 1274, 2239, 2419, 2940, 3261, 3325
BstENI	CCTNNNNNAGG	2 cut(s)	1879, 3145
BstHHI	GCGC	1 cut(s)	2048
BstMAI	GTCTC	2 cut(s)	1963, 2207
BstMWI	GCNNNNNNNGC	5 cut(s)	626, 694, 766, 782, 2906
BstNI	CCWGG	3 cut(s)	726, 2499, 2879
BstNSI	RCATGY	4 cut(s)	361, 1151, 3125, 3327
BstSCI	CCNGG	3 cut(s)	724, 2497, 2877
BstSFI	CTRYAG	7 cut(s)	306, 1008, 1368, 1770, 2365, 2863, 2943
BstSLI	GKGCMC	2 cut(s)	305, 426
BstV1I	GCAGC	9 cut(s)	794, 1351, 1354, 1698, 1985, 2929, 3033, 3184, 3268
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	7 cut(s)	721, 1358, 1376, 1582, 1991, 2482, 3235
BstXI	CCANNNNNNTGG	2 cut(s)	1102, 1387
BstYI	RGATCY	7 cut(s)	721, 1358, 1376, 1582, 1991, 2482, 3235
Bsu36I	CCTNAGG	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	8 cut(s)	629, 673, 701, 769, 899, 1075, 1711, 1735
BtgZI	GCGATG	1 cut(s)	1518
BtsI	GCAGTG	2 cut(s)	2089, 2655
BtsIMutI	CAGTG	7 cut(s)	1227, 1450, 1452, 1666, 2089, 2655, 2863
Cac8I	GCNNGC	8 cut(s)	699, 1073, 1274, 2239, 2419, 2940, 3261, 3325
CaiI	CAGNNNCTG	3 cut(s)	2567, 2862, 3070
CciI	TCATGA	4 cut(s)	246, 550, 1851, 2443
CfoI	GCGC	1 cut(s)	2048
Cfr10I	RCCGGY	1 cut(s)	2909
Cfr13I	GGNCC	7 cut(s)	671, 744, 1734, 1884, 1945, 2076, 3138
CseI	GACGC	3 cut(s)	551, 2614, 2963
DraI	TTTAAA	3 cut(s)	442, 1432, 3573
DrdI	GACNNNNNNGTC	1 cut(s)	2221
DseDI	GACNNNNNNGTC	1 cut(s)	2221
EaeI	YGGCCR	2 cut(s)	699, 1709
Eam1104I	CTCTTC	6 cut(s)	552, 1116, 2797, 2818, 3090, 3381
EarI	CTCTTC	6 cut(s)	552, 1116, 2797, 2818, 3090, 3381
EciI	GGCGGA	1 cut(s)	2734
Ecl136II	GAGCTC	1 cut(s)	2745
Eco130I	CCWWGG	3 cut(s)	1192, 1304, 2682
Eco147I	AGGCCT	2 cut(s)	629, 769
Eco24I	GRGCYC	3 cut(s)	874, 1428, 2747
Eco32I	GATATC	2 cut(s)	1318, 1610
Eco47I	GGWCC	5 cut(s)	744, 1884, 1945, 2076, 3138
Eco53kI	GAGCTC	1 cut(s)	2745
Eco57I	CTGAAG	4 cut(s)	1609, 1998, 3147, 3236
Eco72I	CACGTG	1 cut(s)	3557
Eco81I	CCTNAGG	1 cut(s)	771
Eco88I	CYCGRG	2 cut(s)	2524, 2534
EcoICRI	GAGCTC	1 cut(s)	2745
EcoNI	CCTNNNNNAGG	2 cut(s)	1879, 3145
EcoO109I	RGGNCCY	3 cut(s)	744, 1884, 3138
EcoRI	GAATTC	3 cut(s)	1214, 1493, 1918
EcoRII	CCWGG	3 cut(s)	724, 2497, 2877
EcoRV	GATATC	2 cut(s)	1318, 1610
EcoT14I	CCWWGG	3 cut(s)	1192, 1304, 2682
EcoT38I	GRGCYC	3 cut(s)	874, 1428, 2747
ErhI	CCWWGG	3 cut(s)	1192, 1304, 2682
FaqI	GGGAC	5 cut(s)	541, 730, 792, 2715, 2722
FauI	CCCGC	3 cut(s)	1635, 2246, 3453
FbaI	TGATCA	1 cut(s)	2770
FblI	GTMKAC	5 cut(s)	1769, 2006, 2308, 3430, 3535
Fnu4HI	GCNGC	9 cut(s)	783, 1365, 1368, 1687, 1974, 2943, 3047, 3173, 3257
FriOI	GRGCYC	3 cut(s)	874, 1428, 2747
Fsp4HI	GCNGC	9 cut(s)	783, 1365, 1368, 1687, 1974, 2943, 3047, 3173, 3257
FspBI	CTAG	5 cut(s)	600, 1262, 2549, 3582, 3589
FspI	TGCGCA	1 cut(s)	2047
GlaI	GCGC	1 cut(s)	2047
GluI	GCNGC	9 cut(s)	783, 1365, 1368, 1687, 1974, 2943, 3047, 3173, 3257
GsaI	CCCAGC	1 cut(s)	2595
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	8 cut(s)	629, 673, 701, 769, 899, 1075, 1711, 1735
HapII	CCGG	4 cut(s)	23, 875, 2195, 2910
HgaI	GACGC	3 cut(s)	551, 2614, 2963
HhaI	GCGC	1 cut(s)	2048
Hin6I	GCGC	1 cut(s)	2046
HinP1I	GCGC	1 cut(s)	2046
HincII	GTYRAC	4 cut(s)	394, 3431, 3454, 3536
HindII	GTYRAC	4 cut(s)	394, 3431, 3454, 3536
HindIII	AAGCTT	1 cut(s)	213
HpaII	CCGG	4 cut(s)	23, 875, 2195, 2910
HphI	GGTGA	1 cut(s)	1507
Hpy99I	CGWCG	1 cut(s)	545
HpyCH4III	ACNGT	7 cut(s)	310, 532, 1130, 1536, 1661, 2631, 2705
HpyCH4IV	ACGT	5 cut(s)	848, 1937, 3491, 3556, 3568
HpyF10VI	GCNNNNNNNGC	5 cut(s)	626, 694, 766, 782, 2906
HpySE526I	ACGT	5 cut(s)	848, 1937, 3491, 3556, 3568
HspAI	GCGC	1 cut(s)	2046
KflI	GGGWCCC	1 cut(s)	744
Kpn2I	TCCGGA	1 cut(s)	2194
KpnI	GGTACC	2 cut(s)	3203, 3510
Ksp22I	TGATCA	1 cut(s)	2770
LguI	GCTCTTC	2 cut(s)	552, 3381
LmnI	GCTCC	7 cut(s)	88, 144, 877, 953, 1825, 1910, 2665
Lsp1109I	GCAGC	9 cut(s)	794, 1351, 1354, 1698, 1985, 2929, 3033, 3184, 3268
LweI	GCATC	7 cut(s)	100, 245, 915, 2419, 2437, 2815, 3216
MaeI	CTAG	5 cut(s)	600, 1262, 2549, 3582, 3589
MaeII	ACGT	5 cut(s)	848, 1937, 3491, 3556, 3568
MaeIII	GTNAC	6 cut(s)	1245, 1806, 2858, 2902, 3066, 3371
MflI	RGATCY	7 cut(s)	721, 1358, 1376, 1582, 1991, 2482, 3235
MhlI	GDGCHC	7 cut(s)	305, 426, 874, 1428, 1907, 2747, 3424
MlsI	TGGCCA	2 cut(s)	701, 1711
MluNI	TGGCCA	2 cut(s)	701, 1711
MlyI	GAGTC	2 cut(s)	380, 2813
MmeI	TCCRAC	2 cut(s)	1293, 2943
Mox20I	TGGCCA	2 cut(s)	701, 1711
MroI	TCCGGA	1 cut(s)	2194
MroXI	GAANNNNTTC	4 cut(s)	1566, 2347, 2955, 3249
MscI	TGGCCA	2 cut(s)	701, 1711
MslI	CAYNNNNRTG	2 cut(s)	429, 3078
Msp20I	TGGCCA	2 cut(s)	701, 1711
MspA1I	CMGCKG	3 cut(s)	697, 1364, 1976
MspI	CCGG	4 cut(s)	23, 875, 2195, 2910
MspR9I	CCNGG	3 cut(s)	726, 2499, 2879
MssI	GTTTAAAC	1 cut(s)	3573
Mva1269I	GAATGC	1 cut(s)	1161
MvaI	CCWGG	3 cut(s)	726, 2499, 2879
MwoI	GCNNNNNNNGC	5 cut(s)	626, 694, 766, 782, 2906
NlaIV	GGNNCC	8 cut(s)	723, 745, 746, 873, 1873, 3139, 3201, 3508
NmeAIII	GCCGAG	1 cut(s)	2108
NmuCI	GTSAC	3 cut(s)	1245, 1806, 2858
NsbI	TGCGCA	1 cut(s)	2047
NspI	RCATGY	4 cut(s)	361, 1151, 3125, 3327
PaeI	GCATGC	1 cut(s)	3327
PaeR7I	CTCGAG	1 cut(s)	2534
PagI	TCATGA	4 cut(s)	246, 550, 1851, 2443
PceI	AGGCCT	2 cut(s)	629, 769
PciI	ACATGT	1 cut(s)	1147
PciSI	GCTCTTC	2 cut(s)	552, 3381
PctI	GAATGC	1 cut(s)	1161
PdmI	GAANNNNTTC	4 cut(s)	1566, 2347, 2955, 3249
PflFI	GACNNNGTC	1 cut(s)	389
PflMI	CCANNNNNTGG	3 cut(s)	1820, 2116, 3056
PkrI	GCNGC	9 cut(s)	784, 1366, 1369, 1688, 1975, 2944, 3048, 3174, 3258
PleI	GAGTC	2 cut(s)	380, 2813
PmaCI	CACGTG	1 cut(s)	3557
PmeI	GTTTAAAC	1 cut(s)	3573
PmlI	CACGTG	1 cut(s)	3557
PpsI	GAGTC	2 cut(s)	380, 2813
Ppu21I	YACGTR	2 cut(s)	1938, 3557
PpuMI	RGGWCCY	3 cut(s)	744, 1884, 3138
PscI	ACATGT	1 cut(s)	1147
PsiI	TTATAA	2 cut(s)	1656, 1802
Psp124BI	GAGCTC	1 cut(s)	2747
Psp1406I	AACGTT	1 cut(s)	3568
Psp5II	RGGWCCY	3 cut(s)	744, 1884, 3138
Psp6I	CCWGG	3 cut(s)	724, 2497, 2877
PspCI	CACGTG	1 cut(s)	3557
PspFI	CCCAGC	1 cut(s)	2591
PspGI	CCWGG	3 cut(s)	724, 2497, 2877
PspN4I	GGNNCC	8 cut(s)	723, 745, 746, 873, 1873, 3139, 3201, 3508
PspPI	GGNCC	7 cut(s)	671, 744, 1734, 1884, 1945, 2076, 3138
PspPPI	RGGWCCY	3 cut(s)	744, 1884, 3138
PsrI	GAACNNNNNNTAC	2 cut(s)	842, 874
PstI	CTGCAG	3 cut(s)	1372, 2867, 2947
PstNI	CAGNNNCTG	3 cut(s)	2567, 2862, 3070
PsuI	RGATCY	7 cut(s)	721, 1358, 1376, 1582, 1991, 2482, 3235
PsyI	GACNNNGTC	1 cut(s)	389
PvuII	CAGCTG	2 cut(s)	697, 1976
RseI	CAYNNNNRTG	2 cut(s)	429, 3078
SacI	GAGCTC	1 cut(s)	2747
SalI	GTCGAC	2 cut(s)	3429, 3534
SapI	GCTCTTC	2 cut(s)	552, 3381
SatI	GCNGC	9 cut(s)	783, 1365, 1368, 1687, 1974, 2943, 3047, 3173, 3257
Sau96I	GGNCC	7 cut(s)	671, 744, 1734, 1884, 1945, 2076, 3138
SchI	GAGTC	2 cut(s)	380, 2813
ScrFI	CCNGG	3 cut(s)	726, 2499, 2879
SduI	GDGCHC	7 cut(s)	305, 426, 874, 1428, 1907, 2747, 3424
SfaNI	GCATC	7 cut(s)	100, 245, 915, 2419, 2437, 2815, 3216
SfcI	CTRYAG	7 cut(s)	306, 1008, 1368, 1770, 2365, 2863, 2943
Sfr274I	CTCGAG	1 cut(s)	2534
SinI	GGWCC	5 cut(s)	744, 1884, 1945, 2076, 3138
SlaI	CTCGAG	1 cut(s)	2534
SmiMI	CAYNNNNRTG	2 cut(s)	429, 3078
SmlI	CTYRAG	5 cut(s)	1349, 1541, 2534, 2577, 2746
SmoI	CTYRAG	5 cut(s)	1349, 1541, 2534, 2577, 2746
SphI	GCATGC	1 cut(s)	3327
SseBI	AGGCCT	2 cut(s)	629, 769
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	5 cut(s)	600, 1262, 2549, 3582, 3589
SstI	GAGCTC	1 cut(s)	2747
StuI	AGGCCT	2 cut(s)	629, 769
StyD4I	CCNGG	3 cut(s)	724, 2497, 2877
StyI	CCWWGG	3 cut(s)	1192, 1304, 2682
TaaI	ACNGT	7 cut(s)	310, 532, 1130, 1536, 1661, 2631, 2705
TaiI	ACGT	5 cut(s)	851, 1940, 3494, 3559, 3571
TaqI	TCGA	9 cut(s)	1285, 1497, 1916, 2336, 2535, 3030, 3304, 3430, 3535
TatI	WGTACW	2 cut(s)	354, 403
TscAI	CASTG	7 cut(s)	1234, 1450, 1459, 1666, 2096, 2662, 2863
TseFI	GTSAC	3 cut(s)	1245, 1806, 2858
TseI	GCWGC	9 cut(s)	782, 1364, 1367, 1686, 1973, 2942, 3046, 3172, 3256
Tsp45I	GTSAC	3 cut(s)	1245, 1806, 2858
TspGWI	ACGGA	3 cut(s)	143, 1776, 1897
TspRI	CASTG	7 cut(s)	1234, 1450, 1459, 1666, 2096, 2662, 2863
Tth111I	GACNNNGTC	1 cut(s)	389
Van91I	CCANNNNNTGG	3 cut(s)	1820, 2116, 3056
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	5 cut(s)	744, 1884, 1945, 2076, 3138
XagI	CCTNNNNNAGG	2 cut(s)	1879, 3145
XbaI	TCTAGA	1 cut(s)	1261
XceI	RCATGY	4 cut(s)	361, 1151, 3125, 3327
XcmI	CCANNNNNNNNNTGG	4 cut(s)	379, 2495, 3096, 3422
XhoI	CTCGAG	1 cut(s)	2534
XmiI	GTMKAC	5 cut(s)	1769, 2006, 2308, 3430, 3535
XmnI	GAANNNNTTC	4 cut(s)	1566, 2347, 2955, 3249
XspI	CTAG	5 cut(s)	600, 1262, 2549, 3582, 3589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.