Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002744

Physical Location & Seq

Genomic Coordinates Forward (+)

14723727 .. 14725223

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTTGAACAGTCCACATGGTCTGAGATTCAAGCTACTGCTCCAATTAAAGAATTTATCTCCAAGGATCAAGATTCCCTGAACCATGGGACTAAATGGAGGAATTGTTGTCCCCAGGTCATGAACTCAAGTAAAACACAAGCTCTTCATGATCAAAACATACTTGACATCTCTTCTGGATTCTTGCATCTCTCAGCTGACTCGTTAGTTCCTCAATCCATCAACAAGAACTGCCTCAGTGATTGCAGAGTTCTTCGGCAGGTGGATAAGAAATATATTGCAGTTATGGCCGGTACTACACTTGCTGTTATTGACCAGCACGCTGCAGATGAAAGGATTCAGCTGGAGGAGTTGCGTCAGAAGGTGTTATCTGGAGAAGGAGAAGCAAAGGCGATTACTTTTCTGGATGTTGAACAAGAGTTGGTGCTGTCAGAGATTGGCTACCAGTTACTGTATAACTATGCTAAACCAGTTGAAGGGTGGGGTTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032991 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0099086 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

165

Amino Acids

18.48

Weight (kDa)

5.04

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520 AT4G35520
fragaria_vesca	FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270 FvH4_1g10270
malus_domestica	MD02G1114700.v1.1 MD15G1230500.v1.1 MD15G1230600.v1.1
prunus_persica	Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1 Prupe.7G183500_v2.0.a1
pyrus_communis	pycom02g08960 pycom15g20550
rosa_chinensis	RchiOBHm_Chr2g0097091
rosa_laevigata	RLG00000016702
rosa_multiflora	Rmu_co8451989.1_g000001 Rmu_sc0024596.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144980
rosa_rugosa	Rorug02G0063600 Rorug02G0063700
rosa_samantha	Rh2AG111200 Rh2BG113100 Rh2CG115300 Rh2DG114500
rosa_wichuraiana	Rw2G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	4 cut(s)	8, 32, 413, 476
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	4 cut(s)	35, 143, 197, 343
AluI	AGCT	4 cut(s)	35, 143, 197, 343
AlwI	GGATC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	365, 393
BpuEI	CTTGAG	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	63, 85, 114
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	445, 470
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	63, 85, 114
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	3 cut(s)	15, 207, 250
BseNI	ACTGG	2 cut(s)	445, 470
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	96, 103
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	96, 103
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	67, 151
Bsp19I	CCATGG	1 cut(s)	85
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	3 cut(s)	16, 206, 249
BspHI	TCATGA	2 cut(s)	120, 148
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	75
BspQI	GCTCTTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	445, 470
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	63, 85, 114
BssMI	GATC	2 cut(s)	67, 151
BssT1I	CCWWGG	2 cut(s)	63, 85
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	12, 453
Bst6I	CTCTTC	2 cut(s)	150, 178
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	24, 193, 236
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	70, 154
BstMBI	GATC	2 cut(s)	67, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	451
CciI	TCATGA	2 cut(s)	120, 148
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	4 cut(s)	18, 86, 121, 149
CviJI	RGCY	7 cut(s)	35, 143, 197, 290, 343, 441, 490
CviKI_1	RGCY	7 cut(s)	35, 143, 197, 290, 343, 441, 490
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	3 cut(s)	24, 193, 236
DpnI	GATC	2 cut(s)	69, 153
DpnII	GATC	2 cut(s)	67, 151
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	150, 178
EarI	CTCTTC	2 cut(s)	150, 178
Eco130I	CCWWGG	2 cut(s)	63, 85
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	63, 85
ErhI	CCWWGG	2 cut(s)	63, 85
FaeI	CATG	4 cut(s)	21, 89, 124, 152
FaiI	YATR	9 cut(s)	19, 87, 122, 150, 161, 276, 287, 456, 462
FaqI	GGGAC	2 cut(s)	96, 103
FatI	CATG	4 cut(s)	17, 85, 120, 148
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	2 cut(s)	365, 393
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	4 cut(s)	21, 89, 124, 152
HinfI	GANTC	5 cut(s)	28, 74, 180, 200, 337
HpaII	CCGG	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	25, 360, 433, 494
Hpy188III	TCNNGA	6 cut(s)	71, 121, 149, 177, 372, 404
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	355, 371, 470
HpyCH4III	ACNGT	2 cut(s)	12, 453
HpyCH4V	TGCA	4 cut(s)	187, 246, 281, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	24, 193, 236
Hsp92II	CATG	4 cut(s)	21, 89, 124, 152
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	67, 151
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	2 cut(s)	69, 153
MboI	GATC	2 cut(s)	67, 151
MboII	GAAGA	3 cut(s)	137, 165, 245
MluCI	AATT	3 cut(s)	45, 53, 103
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	4 cut(s)	93, 222, 245, 340
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	197, 343
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	67, 151
NlaIII	CATG	4 cut(s)	21, 89, 124, 152
PagI	TCATGA	2 cut(s)	120, 148
PaqCI	CACCTGC	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	28, 74, 180, 337
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	451
PvuII	CAGCTG	2 cut(s)	197, 343
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	67, 151
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	7 cut(s)	37, 120, 145, 199, 264, 345, 366
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	45, 53, 103
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	63, 85
TaaI	ACNGT	2 cut(s)	12, 453
TasI	AATT	3 cut(s)	45, 53, 103
TfiI	GAWTC	4 cut(s)	28, 74, 180, 337
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	137, 137, 345
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.