FvH4_1g14580

regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004207
Physical Location & Seq
Reverse (-)
8143029 .. 8165503
22475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14580.t2

Sequence Viewer

Length: 9732 bp
ATGTTTCCGAGCGGCGCAATCCGGCGGAGGCTCGCCGCTGTTCTGCGGCCGTGGCTTCGGGAAGAGCCGGAGCTCGAGCTCAATTTAGGGCTCGTCAACTCGCGTGCGGTGGCTAGGAAGCTCCGGTTCGATACCGCGGCGCTGAACCGGCTCGGCGATGATTCGGACCGGTTTTCGTATGAGGAGGTCAGTGTCGAACAGCTGAGCGTTCGGTTCTCCAACTGGCTCGCTCCTGCGTTTTCGATTGAATTTCATGGCGTCAGAGTTGTGCTCTCGACTCGTGAGGTGAAGGAGGAGCGAGTAGCATTTGCAGAGGATATGATGAAAAAGAAGAAGAAGAAGCTTTCTGAGATTGATCCTCAGGGGAGTGATGTGCATGCTTTCCTGGAAAAGCTTATGGCTACTTGTTCGACTCCGAAAAATAAGTTCAAAACATCTCTTTTGAATGTGTTGCTCACACACTGTCAGCTTCAAGTGCATGATATTAGTGTCCAAGTCCAGGTTCCGATATTAAATGATTCGTTTGTTTGTTCACTGGATATAGAAGATATTAATGTAGATCCTCAGTATGTTGATCGCGGGTGTCTTCTTCGAGGCCTGTTTGGTACAGTCTTTGTACCTGTGAAGGAGAGCTCTTTTGCTATAGTAGGTAGTGGTTGTGAGGTTGGGTTTAAGAGGGCAGGTCAGCTGAAACGCGTCTTGTTGTTGAGTGAGTTGTGCACTGGCATTAATTTGAATGATTTTCAGGTTGCGGACATCAATCTTCGAGTCCCTGAAATACATTTTGCATTTTCTCCGGATGATGTTTCTTTGTATTTGGCATTCACTAAAGCATCATCCCAAGAATCACATTGTGCTAGAGATGGCAGACAACTGTGGAAGCTAGTGGCGAGTAGAATTGACAGTATGACTCCAGCTCATAGATGGTCGTTGCAAAAGTCAGCTGTTGTCGTTTGTTTATGGTTACGTTATGTCAATGCTTATGAGTATTTACTGAGGCTAATTGGATATTATGATGATCACTTATTAAGAAGATCAGCTATTAGAATCTATGAGGACAAGATGCTTTCGAGTTCTGTTAAATACCACTGGAAGGTGATTTCTGATATAGAGAAAGAGCTGCCAGTGGAAGCTATTGCACAGGCGTGGAGAGTGGCCCGTAATAGAGCGGCATCAAATGTTCAGTGTCCCGAATTCAGTTCCCAGAAATCATTTGTGACCACAATTTTCAACTTCCTTCTCATAAGTCTTTCGTTATTAGCTTGTACCTGGAGATTTTTGTGTAAGATAGTCTTTTTGATTATGCACCCCTTAGTTTTTAGGAAAACATTAGCCAATGAGCCAAAGAGTGCAGATCTGGATATTGTTTCTGAAGGTCCGTGTACACAGTTTTGCTTCAGTGTGCTGCTTGGAAAAGTTCAAATCACTATCTCTCATAGAAATGAAATTCAACTCTTTGTAAATAAAAAGTTGAAATCACATCTTGGAATCACTTACTCGGATTCACTTTCATTTCGTCTTTCAGTTGATGCACTATTATTAAAATATGTAGCGGATATGTGTGAAGAGTCTTTACTTATATCCTGTGGGCAACTAAAGGTCAGATCCTCATCTCTTATGGAAGCTCCTGTTAAAGAAAGCAGTTCGAAATTGTCTTTTAGTTCTATGGAAGCACATTGGAAGGAGAGCAATGATAATTGGAAGAATATTCTTTGGGGTGAGCCAGCGGAAATATTGTCACTTTTAGAAACTTATGAAACTGGTTCTGCTGATCATATGGAAGGTTCTTGTGTCTCATTTCTGAAAGACATGTGGTTGGATTGGAGAAGTGAGTGCGATAAGTTTGGGAAAAGTGAAATTCAGTACTCTGAAACTCCATTCCTTCTTTGTGAATTTAAAAACTTCTTGATATATCCAGACCTCAAAACATCCGATTCTGGTTTTTTGAAGTTCTTTTTTATTCTGGGAAAGTTGAATCTTGTTTTGGGATATTCATCAATAGTATCATTGTCTCTGCTACTTAGGCAGACACAACATGCTCTATACTGGGCAGAGGCCAATAGTCAGTCGTCCAATTTTTCATATTCTCCAAGAACCAGTGAGAGTAAACCAGAAATCAGTCTGGATAGCAAATACAAGTGCTATGCTAATAGATTAGAAATAGCATTGCTTGAGCTGCTTCCAAAGAAACAGGTTCAACTAGGGGCATTCATTACTGGTCCTCACATCCTTATGTCATTGGGGAAGAACTTTGATGGTGGCAACAAAGAGACAAATCATGTACATATTCAGGACGATTTTCATCTTGTATTTGATGTGCACCATATTGAAGCTGCTGTTTGGCCAACCTCAAAGTTTGATCTTGCATCATTTCCCTCAGCATCTGATGATGTTGAACCAGAGTGCCTCAGGATGGACCAGCCTCTGGTAATTGATATCTCCAAATCTAATAATGGGAAGTATCAAGCTCAGGGTGGGATGTCTCTTGGTTCCTACATTCGTGTTGATGGGTTAGATGTCTGTCTGGTCTCCGCAGCAGGAAAACAAAAAAGCCAAATTTTGGTTTCTAAGCCTATGACTTTGCAGTTCTTGTCCTCCAGGGAGTATGTTCATTCATTTAGCACAAATGTGATTGCTTCCTCTGCAGCTTTGTTTGGGAAAACTGAAGGATTCACTGTTTTATCATATATGGATGAGTTGGATGTTCTCTTTCAGGTGCTTGCAAATTTATCTTCTGCAGTATCATATTCATATAGACAATTTGCATCTATCAGTGACATGCCTTTGCAATTTCCAAAGCAACAATATTCATATGCTGAATCTGGGAAAGAGGAGATTACAACGCATGAACCTCCCTTGAGTTATAGCAGTATCCTATTTTCAACTAATGCAACCTTCAAAATCAAGTCAATGGATATAATTGTTCACAGGTCTAGAAAGAGTGATTATGTGAGGAGCTGCCTAGTAACTTTTGATGCTTCAAGTAGCAAACAGTTTTATGAGCATGACTTGCCTGATTATGGAATTTGGATTTCAGTTCATCACACAAGTATTGATATGTCTTGCAAAGAAGGAAAAGTGATACTCCTTTCTAATTTATCAGAGATTCAGTCTTCAAGTTTTAAATATAAGAATCGGAGATGTAAAAGTCCTGTTCAGTCTGCAGATAGTGATCTGCTACGGCAATCGTTTGACTGCATATATCAACTATCACTTTCTAGTTGTGAAGTTGATTTGTCACTGTTCCTATCTCAGAAATGCCCATCTATTGGCACTGTTAGCAACAAACTCGATACTAGTTCTGTGGGTGAAACAGAGCACCCGGAAAATTTCACAGTCACTAATTCTGAAAGCTCAGGTCATCAGAACTATACCTTTATTGAAGGGTCAGAATTTGCTTCAAATATTCGACCACCAGGCTTAGGCCATTGGTTAGTTGTAAATCTTGCACTGGGTAAGATCTATATGGGAAGGTGCTCAGCAAAGAATGTTATGAATGAGGTGCATCAATTAAATAAGCTTGTGTCATCAGTTTCTGTTGGCGGTGAATTTCAGAGAATCAGTTGCGAAATTCAGGGTGGTTTTCTTTTCCTTGAAACGACAGCTTCGGCTACCTTGTTGCGATGTTTTTCTTCATATCTTGATTGCTTCACAAATATTTTGTCTGGCTTACACTCATCTGATAAGCACGTTGAAGAAGATAAGCCCATCAAAGAAGCTGATACTGCTGTAAATATGACTAGACCAGATAGTCATTCTGATATGGACTCTATGCAAGAGACTTCTTGTACATCTCCACAGATCGAAGGGGGACAGAAGGAAGCTTTTATCTTAAATATTTCTCGCTTTTCTTGCGCTCTTGTGATTCAGGAAGAGAATGGTGCTGTACAGGAACTCGTGTTTGAGATTGATGCCCATTTGAATATTGAGTTGGAAAACATGCGAAGAAAATTTATATTTAAGCTTTCTCGCATATCAATCCTTTCTCAGGTTCTTCAAGAAATTTTGGAAAATCAAACCCGAAGTTCTCAAGTTTCTTCTGTCCCATCAAAGGTTTTTCTATCTCATGTTGCATCAGGAGTGTCTACAGGTTCTCAGCACATGGATGAGATTCATCCTGTTAACAATGCAAGTAGTTCAAGAGGGCCTGGATCACAGGAAGAGCGGTCTGCACATAGTTCTCTGCATGAGGCGTTTCGTCATCAGAAATATATCCTGAAGGGTCAAGAACAAGCCTCCAGTGAGTGTGAGTCAAGACAGGAAGGGGAAACTGTCTTCATATCAGTTGAGAAGCCCCCTTTAAATGAAGTTTGGATTGGAAGCGGAACTATTTCATGTTTCGATATTACAATATCTCTATGTCAAATAAAGATGCTTTTGTCTATGATTTCATCATTCTCTGGGGTATTTGGGGAGGAGGTGATCAGTGAACCGGATAGAAGGCACTGGTCGAGTAACGAGGAATTTAAAAACAGTTTGGAGACGGTGGTTCCTAATGGTGCAATAGTGGCAATTCAGGATGTCCATCAACATATGTATTTTACAGTTGAGGGTAAAGAGAATAAATACAGTTTAGCGGGTGCAGCTCATTATTCTCTTGTGGGAGAAAGCGCTCTTTTCATGGTCAAGTATAACAATCAAAGGGGATGGAAATCATCATCTTTGTGGTTCTCCTTGATATCATTGCATGCCAAGAATGCTTCTGGGGAGCCATTGCGCTTGAACTACAGTCGAGGATCTGATTTTGTTGATGTCTCTAGTGCGAATGATAATGCAGCAGCACTTTGGACAACCATTTCTTGTGAGCCTGAAAGTTACGAGGGTGACATTGACTGGGAGCCCTACAATCAATTGGTGAAAAGGACCTTTTACCTTGTGAACAAGAAGAATGACTCTGCTGTTGCTATTGTAGATGGGATTCCAGAGTTTGTTAGAAAGCCTGGAAATCCGATCAAGTTGAAAGTATTCCATAATGCTTCTATAGCTCCTGATATAAAGGTGGATAGCTACCCCAGATTGGAATCGATTGCTAGTCTGCAACATAACCCACTGAGTGATGAAGGCATAACTTCTGGAAGTGGAAAGCTTCCATGCATCTATGTCACATTTGACACAATTTCCTTGACCATTATCCATGAACTCGTAGATACAAAAGATGTACCTCTCCTTCGTTGTTGCATTGGCGGAACTGGACAGTCCAAACATGAACTTGAAGACTCAAAAGACATGGCTCTCCTTGGTGGCTGCAGTGACAGAACTAAACCCAAATTTACTATTCAAATTCTCCCTTCTAAAGCTAGGGTTATAAGCTCCTTAACAGCAGTGGCATATTACTTTGATGCTCAAAGAAACAAATGCTTTTGGTACATTGTGACTATTGCGTTTGAATGCAGGAGAGAACTTATCCACCCAGTTGAAACATGCTTTTTCTATCGCTCAACTCACAGTTCAGAAGGTGTTTCACATGGAGTACCTGTTCATATCCATTGCAGAACTAAAGAGTTGAATATATCCCTATCCGAGCTTTCATTGGATATACTTCTCTTTACAGTTGGGAAACTAAATTTAGCTGGTCCTTTCTCAGTGAGAAGTACTAAGATTTGGGCCAATTGTTGCAAGGTGGAGAACCAGTCAGGATTAAACCTTCTTTGTCAGTATGATGAGGAAAGTGTGAAAGTTTCCAGAAGGCAGTCTACGTCCATTATTTTAAGGTGCTCGGATTTGGAAAACCAACCTCCAGAGATCGCGTCAGTTGTTTCAGTTCAACTTTCTGGTCCTATATCTTCTCTGACGACCTCTCCAATTCATATCTCTCGTCTAGAAGCGCAAGCATTTGCTTGGAGAACACAAATTATGTCACTTCAAGATTCACAAACTTACCCTGGACCATTTGTTATAGTTGATGTTTCAAGGAAATCTGAGGATGGTTTGTCGATTCGTATTTCTCCTCTCATAAGAATACACAATGAAACTGGATTGTCTATAAAGCTACGATTTCGACGACCTCAGCAGAAGGAAGATGTTTTTGCTTCAGTGGTGCTTAATGCTGGTGATACATATGACGACTCCATGGCCATGTTTGATGCTATAAATTTGGCTGGTGAAGAAAAGAAGGCCCTGAGGTCTTTGAGTCTTGGCAATTTCTTGTTCTCCTTTAGACCTGAAATTCCAGAAATTCCAGATGGCTTAATGAACTCTAAGAAATTAATTTCAGCAGAGTGGTCAGATGATCTTAAAGGTGGAAAGGCAGTTCGTCTCTCTGGAATTTTTCATCAATTAAGCTACAAAGTGCGGAAGGCTTTGTTTACTGAATCTGCGAAATCTTCCTTCAGCACTACCCATTGCACTCTTAAATCGGAAGGGGAAAATACTGTGGATATGCATTTTCTGATTCAGAGTATAAAGAGAAAAGTTCCTATTGCACAACCTGATAAGTCTATGAATGTCCTTGAAAATAGCAAATCACAAGTTGCATTACAAGAGCAGAAGGATATTTATCTTCTTCCTACAGTGTGTGTTTCCAATTTATTGCATACGGATATACATGTCTTTTTGAGTGAATCAGATGGACGTCCTACTACTGTATCTGACAATCTTAGGAATCAATCAACCATATCTTGCGGTTCCATGGTTGAATTTTATACCAACCCTTCCATTATTTTCTTCACTATCACTCTGACTGGTTTTGATTCAACCTGCAAACCAGTGAACAGCAGTGATTGGGTCAAAAAGTTACTGAAGCAGAAAAGTGATGTTCCTTCTGTCGACATTGATCTGGATTTTGGTGGGGGAAAGTGTTCTGCTACCTTAAGATTGTCTCGAGGGAGCAGAGGCACCTTAGAGGCTGCTATTTTCACATCATACTCCCTGAAAAATGATACAGAATTTGGCCTTTGTTTCTTTGTGCCTAATAAGAGGCCCCTTTCTAGGGATGAAGCAGAGAACTATGGTTCTAGCATTCCTTCAGAATTTGGATTATATTTGCCTCCAAAGTCAACAAGATCATGGTTCTTAAAATCCAACAAAGTGCGTCTCAAATTGCTAAAAGATAATGCATCTGAGACGCTTATCGACTTGGATGCTTTATCAGGACTTGCTGAGATAAGCTTGGAAACAGAGGAAGGAGCTGGAATTAGATCTATTACAAAGCTTGGGGTTTCAACAGGACCACCTTTGAGTAAAGTGGTTGTGCCATCACAAGTAGTAACTATGGTCCCAAGACATGTTGTAATTAATGAATCGGGAGAAAACATCATTGTTCGTCAATGTTATTTGCAGGATGACACTGTTGGCATGATCCCTGTAAACAGTAAACAGAGGGCGCCTCTACAGCTGTGGAATGTGATAAACAAGAAGAGAGATGTCAGTTTGTTTGAGCGTGTTATGAAAAAGCACAGAAAAGCTAATGATGATTCACCAATATATCTCCAGTTTCGATTGAATGAGTCTAAATTAGGGTGGTCGGGGCCAGTATGCATTGCTTCTCTAGGAAGGTTTTTCCTCAAGTTCAAAAGGCAGCAATTGGACCAAGTGACAGCACTAGAAAGCAATGTAACAGAATTCGCTTATGTTCATCTTGTTGAAGAAGGCTCTACTCTTGGTTTACACTTCCATAAACCTCCAAATGTCAGTCTCCCATACCGGATCGAGAATTGCTTGCCAGATGTGTCGATAACTTACTACCAGAAGGATTCCTCAGAGCCAGAGATTATTGGATCAGAAAGTTGCACTGATTATGTTTGGGATGATTTGACTCTTCCACATAAGTTGGTCGTCAGGATCAATGATAGTCTTCTACTACGTGAAATTAACCTGGATAAGGTGAGAGCATGGAAGCCTTTCTACAAAACCAGGCAATGGAGTGGACTGGCCACTCATTTACCTTTGGGAAAAGACTCGGGGGACAAGAAGGGTGATTTTGGTGAGTTTAATGGCATGGAGATGATGAAGGTGGGGTTTGAAGTATATGCAGACGGTCCAACCCGGGTTTTAAGATTTTGTGAAATCTCTACCAGTCACAAGGGAGATAAAATGTTTCACTCATGCGAGAAGATTCAGCTAAGAGTTAATCAGTTTACAATTCATCTACTTGAACATGAAAAGCAGGATGGAGAAGATATGGAGCTACCTGGTTATACACCAATCTTAGCTGCAAGAATGGGGAATATAAACTTTGATTCTGTCTTTACATATGAGCAAAAGTTTAGCCAGATCAGTGTACAGTCATTGAATTTGGAGCACAAGTGGGTGGGTGCTCCTTTTGCAGCAATGCTCCGTAGACATCAATCAGACTTCAATGATTCAAATGATTCTGTACTCAAAATTGTCATTGTCTTGCTGTCAACTAGTTCCAATGTTGTACAAATTAAGTACGCGTCTATTGCTCTGCAGCCAATGGATTTAAATCTTGATGAGGAGACATTAATGAAAATTGCCCCATTTTGGAGAACATCTCTTAGTGAGGGGAAGAGTAGCCAGTATTATTTTGATCATTTTGAGATCCATCCGATAAAGATTATTGCAAACTTTCTTCCTGGCGAGTCATATTCAAGTTATAGCTCAGCTGAGGAGACTCTGAGGTCCTTGCTGCACAGTGTAGTTAAGGTCCCTGCGATAAAAAATAAGGTTGTAGAGCTCAATGGTGTTATGGTCACTCATGCTCTTATAACAATGCGTGAATTACTTATCAAATGCGCACAACATTATTCATGGTATGCCATGAGGGCTATATATATTGCAAAGGGAAGTCCGTTGCTTCCACCGGATTTTGTGTCGATATTTGATGACTTGGCTTCTTCGTCTCTTGATGTGTTCTTTGATCCTTCTCGTGCATTAGTGACTCTTCCAGGTTTGACTTTAGGTACCTTCAAATTAATCAGTAAATGCATCGAGGGTAAAGGATTTTTGGGGACGAAACGATATTTTGGTGACTTAGGAAAATCTTTGAGGACGGCAGGGTCAAATGTACTGTTTGCTGCAGTCACTGAAATATCAGACTCTGTTCTAAAAGGAGCAGAAGCAAGTGGTTTTGATGGAGTGGTCACCGGCTTTCACCATGGAATATTGAAATTGGCTATGGAGCCATCATTATTGGGAACTGCTTTGATGGAAGGTGGCCCAGATAGAAAGATTAAGCTTGATCGCAGTCCTGCTGTTGATGAGTTGTATATCGAAGGATACTTGCAAGCGATGTTGGACACGATGTTTAGACAAGAATATTTGAGAGTCAGAGTCATTGATGATCAGGTTTACCTCAAGAACCTGCCCCCAAACAGTTCCCTTATAGAGGAGATTATGGATCGTGTGAAGGGGTTTCTTGTGAGCAAGTCACTTCTGAAAGGAGATCCCTCAATAACTTCCCGCCCCTTGGGTCATCTTCGAGGTGAACGTGAGTGGAGAATCGGCCCAACTGTGCTGACATTAGGTGAGCATCTGTTTGTGAGTTTTGCGATCCGGATGCTGCGGAAGCAAGCTAACAAGTGCATCGCCAACATCAAGTGGAAGCCAGAGAGTGATAGTGGTACGTCAATTGTCCCTGCAAGCTCCTCGGAAGAAGTGGTGAAGGGTAAGTTTATTTGGAAATGGGGAAGTGGGATCGGTAAGTTTGTTTTGTCAGCTGTAGTAGCATATATTGACGGAAGGTTATGTCGTTCTATTCCTAATCCTGTAGCTCGCCGCATTGTTAGTGGCTTTCTGTTGACTTTCCTTGATAACAACAATAGCAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHR-BD VPS13_C

Protein Analysis

3244

Amino Acids

363.13

Weight (kDa)

6.44

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_VAB PF25036 2149 - 2570 2e-19 Vacuolar-sorting associated protein 13, adaptor binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 5306, 8666
AasI GACNNNNNNGTC 3 cut(s) 3750, 8578, 8956
AatII GACGTC 1 cut(s) 6574
Acc16I TGCGCA 1 cut(s) 8695
Acc36I ACCTGC 3 cut(s) 671, 6704, 9270
Acc65I GGTACC 1 cut(s) 8861
AccB1I GGYRCC 3 cut(s) 6833, 7321, 8861
AccB7I CCANNNNNTGG 4 cut(s) 2425, 2560, 3269, 7857
AccBSI CCGCTC 3 cut(s) 12, 1169, 4165
AccI GTMKAC 4 cut(s) 4085, 5693, 6765, 8278
AccII CGCG 6 cut(s) 103, 137, 579, 696, 5747, 8375
AccIII TCCGGA 2 cut(s) 796, 9453
AcoI YGGCCR 4 cut(s) 47, 2342, 6072, 7869
AcuI CTGAAG 8 cut(s) 1381, 1392, 2685, 4238, 6015, 6313, 6758, 6948
AcyI GRCGYC 3 cut(s) 258, 6571, 7322
AdeI CACNNNGTG 2 cut(s) 854, 5054
AfeI AGCGCT 1 cut(s) 4612
AflII CTTAAG 1 cut(s) 6808
AflIII ACRYGT 5 cut(s) 694, 1809, 6544, 7222, 8373
AgeI ACCGGT 1 cut(s) 168
AhlI ACTAGT 2 cut(s) 3296, 8345
AjuI GAANNNNNNNTTGG 8 cut(s) 486, 518, 1967, 1999, 3914, 3946, 4299, 4331
AleI CACNNNNGTG 2 cut(s) 1144, 2627
AloI GAACNNNNNNTCC 4 cut(s) 5460, 5492, 6234, 6266
Alw44I GTGCAC 2 cut(s) 718, 2318
AlwNI CAGNNNCTG 5 cut(s) 2384, 2425, 3536, 8984, 8999
Ama87I CYCGRG 4 cut(s) 74, 6819, 7897, 7983
Aor13HI TCCGGA 2 cut(s) 796, 9453
Aor51HI AGCGCT 1 cut(s) 4612
ApaLI GTGCAC 2 cut(s) 718, 2318
ArsI GACNNNNNNTTYG 2 cut(s) 3647, 3679
AseI ATTAAT 6 cut(s) 552, 729, 6206, 7233, 8423, 8873
AsiGI ACCGGT 1 cut(s) 168
Asp700I GAANNNNTTC 4 cut(s) 4330, 4964, 6796, 7838
Asp718I GGTACC 1 cut(s) 8861
AspLEI GCGC 8 cut(s) 17, 142, 3857, 4613, 4719, 5827, 7324, 8696
AsuC2I CCSGG 3 cut(s) 3323, 7984, 7985
AsuII TTCGAA 1 cut(s) 1646
AvaI CYCGRG 4 cut(s) 74, 6819, 7897, 7983
AxyI CCTNAGG 3 cut(s) 360, 2408, 6119
BaeGI GKGCMC 2 cut(s) 722, 2322
BaeI ACNNNNGTAYC 4 cut(s) 3714, 3747, 6567, 6600
BalI TGGCCA 3 cut(s) 2344, 6074, 7871
BanI GGYRCC 3 cut(s) 6833, 7321, 8861
BanII GRGCYC 6 cut(s) 75, 81, 93, 635, 4842, 8637
BarI GAAGNNNNNNTAC 8 cut(s) 1557, 1589, 5151, 5183, 5677, 5709, 7826, 7858
BauI CACGAG 3 cut(s) 279, 3896, 8826
BbsI GAAGAC 5 cut(s) 578, 3105, 4267, 5220, 7784
BbvCI CCTCAGC 3 cut(s) 2377, 6006, 8565
BceAI ACGGC 3 cut(s) 34, 3197, 8967
BcgI CGANNNNNNTGC 8 cut(s) 3271, 3305, 7061, 7095, 9439, 9473, 9528, 9562
BciVI GTATCC 2 cut(s) 2882, 9170
BclI TGATCA 5 cut(s) 1018, 1771, 4422, 8488, 9241
BcnI CCSGG 3 cut(s) 3323, 7984, 7985
BcuI ACTAGT 2 cut(s) 3296, 8345
BfoI RGCGCY 3 cut(s) 143, 4614, 7325
BfrI CTTAAG 1 cut(s) 6808
BfuAI ACCTGC 3 cut(s) 671, 6704, 9270
BfuI GTATCC 2 cut(s) 2882, 9170
BglI GCCNNNNNGGC 1 cut(s) 8723
BglII AGATCT 3 cut(s) 1354, 3459, 7136
BlpI GCTNAGC 3 cut(s) 203, 3478, 8560
BmcAI AGTACT 2 cut(s) 1865, 5593
BmeT110I CYCGRG 4 cut(s) 74, 6819, 7897, 7983
BmrI ACTGGG 4 cut(s) 2056, 3461, 4843, 5405
BmuI ACTGGG 4 cut(s) 2056, 3461, 4843, 5405
BpiI GAAGAC 5 cut(s) 578, 3105, 4267, 5220, 7784
BplI GAGNNNNNCTC 6 cut(s) 255, 287, 7309, 7341, 8437, 8469
BpmI CTGGAG 6 cut(s) 897, 1291, 2581, 4222, 5721, 7412
Bpu10I CCTNAGC 6 cut(s) 2377, 2469, 3355, 3421, 6006, 8565
Bpu1102I GCTNAGC 3 cut(s) 203, 3478, 8560
Bpu14I TTCGAA 1 cut(s) 1646
BpuEI CTTGAG 5 cut(s) 2192, 2878, 4014, 7487, 9239
BpuMI CCSGG 3 cut(s) 3323, 7984, 7985
Bsa29I ATCGAT 1 cut(s) 5024
BsaAI YACGTR 1 cut(s) 7802
BsaBI GATNNNNATC 9 cut(s) 1609, 1993, 2301, 3171, 4524, 4651, 5020, 6495, 8403
BsaHI GRCGYC 3 cut(s) 258, 6571, 7322
BsaI GGTCTC 1 cut(s) 2533
BsaWI WCCGGW 7 cut(s) 123, 168, 796, 4432, 7641, 8761, 9453
BsaXI ACNNNNNCTCC 8 cut(s) 5460, 5490, 5615, 5645, 5782, 5812, 8228, 8258
Bse118I RCCGGY 3 cut(s) 147, 168, 9044
Bse21I CCTNAGG 3 cut(s) 360, 2408, 6119
Bse8I GATNNNNATC 9 cut(s) 1609, 1993, 2301, 3171, 4524, 4651, 5020, 6495, 8403
BseAI TCCGGA 2 cut(s) 796, 9453
BseCI ATCGAT 1 cut(s) 5024
BseJI GATNNNNATC 9 cut(s) 1609, 1993, 2301, 3171, 4524, 4651, 5020, 6495, 8403
BseSI GKGCMC 2 cut(s) 722, 2322
BseX3I CGGCCG 1 cut(s) 47
BsgI GTGCAG 4 cut(s) 1371, 4155, 4602, 8573
Bsh1236I CGCG 6 cut(s) 103, 137, 579, 696, 5747, 8375
Bsh1285I CGRYCG 1 cut(s) 50
BshNI GGYRCC 3 cut(s) 6833, 7321, 8861
BshTI ACCGGT 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 5024
BsiEI CGRYCG 1 cut(s) 50
BsiHKCI CYCGRG 4 cut(s) 74, 6819, 7897, 7983
BslFI GGGAC 9 cut(s) 755, 1173, 3825, 4028, 7199, 7916, 8591, 8923, 9518
BsmBI CGTCTC 5 cut(s) 4475, 6260, 7037, 7055, 8805
BsmFI GGGAC 9 cut(s) 755, 1173, 3825, 4028, 7199, 7916, 8591, 8923, 9518
BsmI GAATGC 5 cut(s) 821, 2207, 4702, 5393, 6957
Bso31I GGTCTC 1 cut(s) 2533
BsoBI CYCGRG 4 cut(s) 74, 6819, 7897, 7983
Bsp119I TTCGAA 1 cut(s) 1646
Bsp13I TCCGGA 2 cut(s) 796, 9453
Bsp1407I TGTACA 6 cut(s) 1382, 2281, 3788, 3886, 8218, 8359
Bsp1720I GCTNAGC 3 cut(s) 203, 3478, 8560
Bsp19I CCATGG 3 cut(s) 6069, 6627, 9055
BspDI ATCGAT 1 cut(s) 5024
BspEI TCCGGA 2 cut(s) 796, 9453
BspFNI CGCG 6 cut(s) 103, 137, 579, 696, 5747, 8375
BspMAI CTGCAG 6 cut(s) 2647, 2740, 3166, 5249, 8391, 8980
BspMI ACCTGC 3 cut(s) 671, 6704, 9270
BspQI GCTCTTC 2 cut(s) 57, 4155
BspT104I TTCGAA 1 cut(s) 1646
BspT107I GGYRCC 3 cut(s) 6833, 7321, 8861
BspTI CTTAAG 1 cut(s) 6808
BspTNI GGTCTC 1 cut(s) 2533
BsrBI CCGCTC 3 cut(s) 12, 1169, 4165
BsrFI RCCGGY 3 cut(s) 147, 168, 9044
BsrGI TGTACA 6 cut(s) 1382, 2281, 3788, 3886, 8218, 8359
BssAI RCCGGY 3 cut(s) 147, 168, 9044
BssNI GRCGYC 3 cut(s) 258, 6571, 7322
BssSI CACGAG 3 cut(s) 279, 3896, 8826
BssT1I CCWWGG 5 cut(s) 5236, 6069, 6627, 9055, 9366
Bst2BI CACGAG 3 cut(s) 279, 3896, 8826
Bst6I CTCTTC 8 cut(s) 57, 1560, 3867, 4155, 7349, 7761, 8462, 8847
BstACI GRCGYC 3 cut(s) 258, 6571, 7322
BstAFI CTTAAG 1 cut(s) 6808
BstAPI GCANNNNNTGC 1 cut(s) 3010
BstAUI TGTACA 6 cut(s) 1382, 2281, 3788, 3886, 8218, 8359
BstBAI YACGTR 1 cut(s) 7802
BstBI TTCGAA 1 cut(s) 1646
BstDSI CCRYGG 5 cut(s) 50, 135, 6069, 6627, 9055
BstEII GGTNACC 1 cut(s) 9040
BstENI CCTNNNNNAGG 3 cut(s) 3986, 7817, 9284
BstFNI CGCG 6 cut(s) 103, 137, 579, 696, 5747, 8375
BstH2I RGCGCY 3 cut(s) 143, 4614, 7325
BstHHI GCGC 8 cut(s) 17, 142, 3857, 4613, 4719, 5827, 7324, 8696
BstMCI CGRYCG 1 cut(s) 50
BstNSI RCATGY 9 cut(s) 380, 1813, 2039, 2782, 3943, 4691, 5424, 6548, 7226
BstPI GGTNACC 1 cut(s) 9040
BstSLI GKGCMC 2 cut(s) 722, 2322
BstUI CGCG 6 cut(s) 103, 137, 579, 696, 5747, 8375
BstV2I GAAGAC 5 cut(s) 578, 3105, 4267, 5220, 7784
BstX2I RGATCY 8 cut(s) 559, 1354, 1604, 3459, 4736, 7136, 8499, 9343
BstYI RGATCY 8 cut(s) 559, 1354, 1604, 3459, 4736, 7136, 8499, 9343
BstZI CGGCCG 1 cut(s) 47
Bsu15I ATCGAT 1 cut(s) 5024
Bsu36I CCTNAGG 3 cut(s) 360, 2408, 6119
BsuI GTATCC 2 cut(s) 2882, 9170
BsuTUI ATCGAT 1 cut(s) 5024
BtgI CCRYGG 5 cut(s) 50, 135, 6069, 6627, 9055
BtgZI GCGATG 4 cut(s) 171, 3637, 9203, 9469
BtsI GCAGTG 3 cut(s) 5254, 5328, 6721
BveI ACCTGC 3 cut(s) 671, 6704, 9270
CaiI CAGNNNCTG 5 cut(s) 2384, 2425, 3536, 8984, 8999
CfoI GCGC 8 cut(s) 17, 142, 3857, 4613, 4719, 5827, 7324, 8696
Cfr10I RCCGGY 3 cut(s) 147, 168, 9044
Cfr42I CCGCGG 1 cut(s) 138
Cfr9I CCCGGG 1 cut(s) 7983
ClaI ATCGAT 1 cut(s) 5024
CpoI CGGWCCG 1 cut(s) 166
CseI GACGC 6 cut(s) 247, 685, 5736, 7019, 7072, 8364
CsiI ACCWGGT 1 cut(s) 8128
CspAI ACCGGT 1 cut(s) 168
CspCI CAANNNNNGTGG 2 cut(s) 7749, 7784
CspI CGGWCCG 1 cut(s) 166
DinI GGCGCC 1 cut(s) 7323
DraI TTTAAA 5 cut(s) 1897, 3124, 4302, 4468, 8403
DraIII CACNNNGTG 2 cut(s) 854, 5054
DrdI GACNNNNNNGTC 3 cut(s) 3750, 8578, 8956
DseDI GACNNNNNNGTC 3 cut(s) 3750, 8578, 8956
EaeI YGGCCR 4 cut(s) 47, 2342, 6072, 7869
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 8 cut(s) 57, 1560, 3867, 4155, 7349, 7761, 8462, 8847
EarI CTCTTC 8 cut(s) 57, 1560, 3867, 4155, 7349, 7761, 8462, 8847
EciI GGCGGA 2 cut(s) 40, 5199
Ecl136II GAGCTC 4 cut(s) 73, 79, 633, 8635
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 5 cut(s) 5236, 6069, 6627, 9055, 9366
Eco147I AGGCCT 1 cut(s) 597
Eco24I GRGCYC 6 cut(s) 75, 81, 93, 635, 4842, 8637
Eco31I GGTCTC 1 cut(s) 2533
Eco32I GATATC 2 cut(s) 2437, 4680
Eco47III AGCGCT 1 cut(s) 4612
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 4 cut(s) 73, 79, 633, 8635
Eco57I CTGAAG 8 cut(s) 1381, 1392, 2685, 4238, 6015, 6313, 6758, 6948
Eco81I CCTNAGG 3 cut(s) 360, 2408, 6119
Eco88I CYCGRG 4 cut(s) 74, 6819, 7897, 7983
Eco91I GGTNACC 1 cut(s) 9040
EcoICRI GAGCTC 4 cut(s) 73, 79, 633, 8635
EcoNI CCTNNNNNAGG 3 cut(s) 3986, 7817, 9284
EcoO109I RGGNCCY 6 cut(s) 4145, 4863, 6115, 6918, 8580, 8605
EcoO65I GGTNACC 1 cut(s) 9040
EcoRI GAATTC 2 cut(s) 1193, 7559
EcoRV GATATC 2 cut(s) 2437, 4680
EcoT14I CCWWGG 5 cut(s) 5236, 6069, 6627, 9055, 9366
EcoT22I ATGCAT 5 cut(s) 5096, 6384, 7057, 7478, 8888
EcoT38I GRGCYC 6 cut(s) 75, 81, 93, 635, 4842, 8637
EgeI GGCGCC 1 cut(s) 7323
EheI GGCGCC 1 cut(s) 7323
ErhI CCWWGG 5 cut(s) 5236, 6069, 6627, 9055, 9366
Esp3I CGTCTC 5 cut(s) 4475, 6260, 7037, 7055, 8805
FalI AAGNNNNNCTT 2 cut(s) 1277, 1309
FaqI GGGAC 9 cut(s) 755, 1173, 3825, 4028, 7199, 7916, 8591, 8923, 9518
FauI CCCGC 3 cut(s) 572, 4570, 9368
FauNDI CATATG 5 cut(s) 1776, 2812, 4533, 6058, 8191
FbaI TGATCA 5 cut(s) 1018, 1771, 4422, 8488, 9241
FblI GTMKAC 4 cut(s) 4085, 5693, 6765, 8278
FriOI GRGCYC 6 cut(s) 75, 81, 93, 635, 4842, 8637
FspAI RTGCGCAY 1 cut(s) 8695
FspI TGCGCA 1 cut(s) 8695
GlaI GCGC 8 cut(s) 16, 141, 3856, 4612, 4718, 5826, 7323, 8695
GsuI CTGGAG 6 cut(s) 897, 1291, 2581, 4222, 5721, 7412
HaeII RGCGCY 3 cut(s) 143, 4614, 7325
HgaI GACGC 6 cut(s) 247, 685, 5736, 7019, 7072, 8364
HhaI GCGC 8 cut(s) 17, 142, 3857, 4613, 4719, 5827, 7324, 8696
Hin1I GRCGYC 3 cut(s) 258, 6571, 7322
Hin6I GCGC 8 cut(s) 15, 140, 3855, 4611, 4717, 5825, 7322, 8694
HinP1I GCGC 8 cut(s) 15, 140, 3855, 4611, 4717, 5825, 7322, 8694
HincII GTYRAC 6 cut(s) 97, 4123, 6766, 6996, 8343, 9699
HindII GTYRAC 6 cut(s) 97, 4123, 6766, 6996, 8343, 9699
HindIII AAGCTT 9 cut(s) 341, 392, 3518, 3822, 3962, 5084, 7105, 7148, 9134
HpaI GTTAAC 1 cut(s) 4123
Hpy99I CGWCG 1 cut(s) 6003
HpyCH4IV ACGT 7 cut(s) 967, 3690, 5696, 6571, 7801, 9388, 9524
HpySE526I ACGT 7 cut(s) 967, 3690, 5696, 6571, 7801, 9388, 9524
Hsp92I GRCGYC 3 cut(s) 258, 6571, 7322
HspAI GCGC 8 cut(s) 15, 140, 3855, 4611, 4717, 5825, 7322, 8694
KasI GGCGCC 1 cut(s) 7321
Kpn2I TCCGGA 2 cut(s) 796, 9453
KpnI GGTACC 1 cut(s) 8865
Ksp22I TGATCA 5 cut(s) 1018, 1771, 4422, 8488, 9241
KspAI GTTAAC 1 cut(s) 4123
KspI CCGCGG 1 cut(s) 138
LguI GCTCTTC 2 cut(s) 57, 4155
MabI ACCWGGT 1 cut(s) 8128
MaeII ACGT 7 cut(s) 967, 3690, 5696, 6571, 7801, 9388, 9524
MbiI CCGCTC 3 cut(s) 12, 1169, 4165
MfeI CAATTG 4 cut(s) 4850, 5608, 7520, 9528
MflI RGATCY 8 cut(s) 559, 1354, 1604, 3459, 4736, 7136, 8499, 9343
MlsI TGGCCA 3 cut(s) 2344, 6074, 7871
MluI ACGCGT 2 cut(s) 694, 8373
MluNI TGGCCA 3 cut(s) 2344, 6074, 7871
Mly113I GGCGCC 1 cut(s) 7322
MmeI TCCRAC 7 cut(s) 243, 1797, 2679, 3912, 7044, 8003, 9174
Mox20I TGGCCA 3 cut(s) 2344, 6074, 7871
Mph1103I ATGCAT 5 cut(s) 5096, 6384, 7057, 7478, 8888
MroI TCCGGA 2 cut(s) 796, 9453
MroXI GAANNNNTTC 4 cut(s) 4330, 4964, 6796, 7838
MscI TGGCCA 3 cut(s) 2344, 6074, 7871
MslI CAYNNNNRTG 8 cut(s) 1144, 1440, 2231, 2627, 4104, 4663, 6074, 7940
Msp20I TGGCCA 3 cut(s) 2344, 6074, 7871
MspA1I CMGCKG 9 cut(s) 38, 137, 202, 688, 944, 1727, 7333, 8564, 9617
MspCI CTTAAG 1 cut(s) 6808
MunI CAATTG 4 cut(s) 4850, 5608, 7520, 9528
Mva1269I GAATGC 5 cut(s) 821, 2207, 4702, 5393, 6957
MvnI CGCG 6 cut(s) 103, 137, 579, 696, 5747, 8375
NarI GGCGCC 1 cut(s) 7322
NciI CCSGG 3 cut(s) 3323, 7984, 7985
NcoI CCATGG 3 cut(s) 6069, 6627, 9055
NdeI CATATG 5 cut(s) 1776, 2812, 4533, 6058, 8191
NmeAIII GCCGAG 1 cut(s) 132
NsbI TGCGCA 1 cut(s) 8695
NsiI ATGCAT 5 cut(s) 5096, 6384, 7057, 7478, 8888
NspI RCATGY 9 cut(s) 380, 1813, 2039, 2782, 3943, 4691, 5424, 6548, 7226
NspV TTCGAA 1 cut(s) 1646
OliI CACNNNNGTG 2 cut(s) 1144, 2627
PaeI GCATGC 2 cut(s) 380, 4691
PaeR7I CTCGAG 2 cut(s) 74, 6819
PceI AGGCCT 1 cut(s) 597
PciI ACATGT 3 cut(s) 1809, 6544, 7222
PciSI GCTCTTC 2 cut(s) 57, 4155
PcsI WCGNNNNNNNCGW 2 cut(s) 5998, 9385
PctI GAATGC 5 cut(s) 821, 2207, 4702, 5393, 6957
PdmI GAANNNNTTC 4 cut(s) 4330, 4964, 6796, 7838
PflMI CCANNNNNTGG 4 cut(s) 2425, 2560, 3269, 7857
PfoI TCCNGGA 1 cut(s) 384
PinAI ACCGGT 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 7325
Ppu21I YACGTR 1 cut(s) 7802
PpuMI RGGWCCY 3 cut(s) 4863, 8580, 8605
PscI ACATGT 3 cut(s) 1809, 6544, 7222
PshBI ATTAAT 6 cut(s) 552, 729, 6206, 7233, 8423, 8873
PsiI TTATAA 2 cut(s) 5306, 8666
Psp124BI GAGCTC 4 cut(s) 75, 81, 635, 8637
Psp5II RGGWCCY 3 cut(s) 4863, 8580, 8605
PspEI GGTNACC 1 cut(s) 9040
PspPPI RGGWCCY 3 cut(s) 4863, 8580, 8605
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 6 cut(s) 2647, 2740, 3166, 5249, 8391, 8980
PstNI CAGNNNCTG 5 cut(s) 2384, 2425, 3536, 8984, 8999
PsuI RGATCY 8 cut(s) 559, 1354, 1604, 3459, 4736, 7136, 8499, 9343
PvuII CAGCTG 6 cut(s) 202, 688, 944, 7333, 8564, 9617
RseI CAYNNNNRTG 8 cut(s) 1144, 1440, 2231, 2627, 4104, 4663, 6074, 7940
Rsr2I CGGWCCG 1 cut(s) 166
RsrII CGGWCCG 1 cut(s) 166
SacI GAGCTC 4 cut(s) 75, 81, 635, 8637
SacII CCGCGG 1 cut(s) 138
SalI GTCGAC 1 cut(s) 6764
SapI GCTCTTC 2 cut(s) 57, 4155
ScaI AGTACT 2 cut(s) 1865, 5593
SexAI ACCWGGT 1 cut(s) 8128
SfoI GGCGCC 1 cut(s) 7323
Sfr274I CTCGAG 2 cut(s) 74, 6819
Sfr303I CCGCGG 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 1646
SgrBI CCGCGG 1 cut(s) 138
SlaI CTCGAG 2 cut(s) 74, 6819
SmaI CCCGGG 1 cut(s) 7985
SmiI ATTTAAAT 1 cut(s) 8403
SmiMI CAYNNNNRTG 8 cut(s) 1144, 1440, 2231, 2627, 4104, 4663, 6074, 7940
SmlI CTYRAG 8 cut(s) 74, 2171, 2857, 4029, 6808, 6819, 7502, 9254
SmoI CTYRAG 8 cut(s) 74, 2171, 2857, 4029, 6808, 6819, 7502, 9254
SpeI ACTAGT 2 cut(s) 3296, 8345
SphI GCATGC 2 cut(s) 380, 4691
SseBI AGGCCT 1 cut(s) 597
SspDI GGCGCC 1 cut(s) 7321
SspI AATATT 9 cut(s) 1708, 1734, 2807, 3406, 3658, 3838, 3925, 9063, 9218
SstI GAGCTC 4 cut(s) 75, 81, 635, 8637
StuI AGGCCT 1 cut(s) 597
StyI CCWWGG 5 cut(s) 5236, 6069, 6627, 9055, 9366
SwaI ATTTAAAT 1 cut(s) 8403
TaiI ACGT 7 cut(s) 970, 3693, 5699, 6574, 7804, 9391, 9527
TauI GCSGC 6 cut(s) 15, 38, 49, 140, 1172, 9678
TspGWI ACGGA 5 cut(s) 1368, 6551, 8264, 8739, 9651
TspMI CCCGGG 1 cut(s) 7983
Van91I CCANNNNNTGG 4 cut(s) 2425, 2560, 3269, 7857
Vha464I CTTAAG 1 cut(s) 6808
VneI GTGCAC 2 cut(s) 718, 2318
VspI ATTAAT 6 cut(s) 552, 729, 6206, 7233, 8423, 8873
XagI CCTNNNNNAGG 3 cut(s) 3986, 7817, 9284
XbaI TCTAGA 2 cut(s) 2933, 5818
XceI RCATGY 9 cut(s) 380, 1813, 2039, 2782, 3943, 4691, 5424, 6548, 7226
XcmI CCANNNNNNNNNTGG 1 cut(s) 921
XhoI CTCGAG 2 cut(s) 74, 6819
XmaI CCCGGG 1 cut(s) 7983
XmiI GTMKAC 4 cut(s) 4085, 5693, 6765, 8278
XmnI GAANNNNTTC 4 cut(s) 4330, 4964, 6796, 7838
ZraI GACGTC 1 cut(s) 6572
ZrmI AGTACT 2 cut(s) 1865, 5593
Zsp2I ATGCAT 5 cut(s) 5096, 6384, 7057, 7478, 8888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.