RchiOBHm_Chr2g0103341

regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004207
Physical Location & Seq
Reverse (-)
14865858 .. 14886103
20246 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47770

Sequence Viewer

Length: 9717 bp
ATGTTTCCGAGCGGCACAATCCGGCGGAGGCTGGCCGCTCTGCTGCGGCCGTGGCTTCGGGAAGAGCCGGAACTCGAGCTCAGTTTGGGGCTGATCAGTTCGCACGCGGTGGCTAAGAACCTCCGGTTCGATACCGCGGCGCTCAATCGGCTCGGCGACGATTCGGACGGGCTTTTGTATAAGGAGGTCAGTGTCGAACAGTTGAGCGTTCGGTTCTCGAACTGGCTCGCTCCTGCATTTTCAATCGAGTTTCATGGCGTCAAAGTGATGCTCTCGACTCGGGAGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTTCTGAGGATACATTTGCAGAGGATACGAAGAAGAAGAAGCTTTCTGAGATTGATCCTCAGGGGAGTGCTGTGCATGCTTTTCTGGAAAATCTTATGGCTACTTCTACGACTCCGAAAAATAAGTTCAAAACATCTCTTTTGAATCTGTTACTCACACACTGTCAGCTCCAAGTGCATGATATTAGTGTCCAAGTCCAGGTTCCGATCTTAAATGATTCGTTTTTCTGTTCACTGGATATAGAAGATATAAATGTAGATCCTCAGTATATTGATCGTGGGTGTCTTCTTCGAGGCCTTTTTGGTACATTCTTTGTACCTATGAAGGAGAGCTCTTTTGCTATAGTAGGCAGTGGTTGTGAGGTTGGTTTTAAGAGGGCAGGTCAACTCAAACGTGTCTTGTTATTGACCGAGTTGTGCAGTTGCATTAAGTTGAATGATTTTCAGCTTGTAGACATCAATCTTCGAGTCCCTGAAATACATTTTTCATTTTCTCCGGATGATGTTTCTTTCTATTTGGCATTCACTACAGCATCATCCCAAGAATCTCATCGTGCTAGAGATGGCAGACAACTGTGGAAGCTAGCTGCGAGTAGAATTGACAATATGACTTCAGCTCATAGGTGGTCGTTGCAAAAGTCAGCTGTTGCTGTTTGTTTCTGGTTACGTTATCTCAATGCTTATGAGTATTTACTGTTGCTAATTGGATATTATGACGACCACTTACTAAAAAGATCAGCTATTAGAATCTATGAGGACAAGATGCTTTTGAGTTCTGTTGAAAACCAATGGAAGGTGATTTCTGATATTGAGAAAGAGCTGCCAGCTGAAGCTATTGCACAGGCATGGAAAGTAGCCCGTAACAGAGCAGCATCAAATGTTCAATGTCCCGAATATAGTTCCAAAAAACCATTTGTGACTACAATTTACAACTTCCTTCTCATAATCCTTTCATTACTAGCTTGTGCCTGGAGATTTTTTTGCAAGATAGTCCTTTTTATTATGCACCTCTTTGTTTTTAGGAAAATATTAGTCAATGAGCCAAAGAGTGCAGATCTGGATATTGTTTCTGAAGGTCCGTGTACGCAGTTTTGCTTCAGTTTGATGCTTGGAAAAGTTCAAATCACTATCTCTCATAGAAATGAAATTCAACTCTTAGTAAATGAGAAGTTGAAATCACATCTTGGGATCACTTACTCGGATTCACTTTCATTTCGTCTTTCAGTTGATGCACTGTTATTAAAATATGTAGAGGACATGTGTGAAGAGTCTTTACTGATATCCTGTGGGCAATTAAAGGTCAGATCCTCATCTCTTATGGAAGCTCCTGTTAAAGAAAGCAGTTCAAAATTATTCTTTAGTTCTATGGAAGCACATTGGAAGGAGAGCAATGATAAGTGGAACAATATTCTGTGGGGTGAGCCAGCAGAAATATTTCCACTTTTAGAAACTTCTGAAACTGGTTGTGCTGATCATGTTGAAGGTTCTTGTGTCTCATTTCTGAAAGACATGTGGTTGGATTGGAGAAGTGAGTGCGATAAATTTGGAAAAAGTGAAATTCAGTACTCTGAAACTCCATTCCTTCTTTGTGAATTTAAAAATTTCTTGATATATCCAGACCTCAAAACATCGGATTCTGGTTTTTGGAAGTTCTATTTTGTTCTGGGAAAGTTGAATCTTGTGTTGGGATATTCATCAATAGTATCATTGTCTTTGCTATTTAGGCAGATACAACATACTCTATGCTGGGGAGAGACCAATGGTCAGTCACCCGGTCTTTCACATTCTCCAAGAACCAGTGAGAGTAAACCAGAAATCAGTCTGGATAGCAAATACAAGTGCTATGCTAATAGATTAGAAATGGCATTGCTTAAAATGCTTCCAAAAAAACATGTTCAACTAGGGGTATTCATTGCTGGTCCTCACATCCTTATGTCATTGGGAAAGAATTTTGACGGTGGCAACAAAGACAAAAATCATGTATATATTCAGGACGATTTTCACGTTGCATTTGATGTGCACAATATTGAAGCTGCTGTTTGGCCAACCTCAAAGTTTGATCTTGCATCATTCGTGGGGCCCTCAGCATCTGATGATGTGGAACCAGAGTGCGTCAGGATGGACCAGCCTCTGGTGATTGATATCTCTAACTCTAATAATGGGAAGTATCAAGCTCAGGGTGGGATCTCTCTTGGTTCCTACATACGAGTTGATGGTTTAGATGTCTGCCTGGTTGCCGCAGCAGGAAAACGACAAAGCCAGATTTTGGTTTCTAAGCCAATGACTTTGCAGTTGTTATCCTCCAGGGAGTATGTTCATTCATTTAGCACAAATGTTATTGCTTTCTCTGCGGCTTTGTTTGGGAAAACTGAAGGATTCACCATTTTATCGTACATGGATGAATTTGATGTTCTCTTTCAGGTGCTTGCAAATTTATCTTCTGCAGTATCATATTCATTTAGACATTTTGCATCTGTCAGTGACTTGCCATTACAATTTGGAAAGCAACAATATTCAAATGCTGAATCTGAGAACGAGGAGACTACAGCGCATGAACCTCCCTTGAATTATAGCAGTGTCCTATTTTCAACTAATGGGACCTTCAAAATCAAGTCAATGAATATAATCGTGCACAAGTCTAGGATGGGTGATAATGTGGGGAGCTGCCTAGCAACCTCTGATGCTTCAAGTAGCAAACAGTTGTCTGAGCATGACTTGCCTGATTATGGAATTTGGATTTCAGTTCATCAAACAAGTCTTGATATGTCTTACAAAGAAGGAAAAGTGATACTTCTTTCTAATTTATCAGAAATTCAGTCTTCAAGTTTTAGATATAAGAATCGGAGAGGCAAAAGTACTGATCAGTCTGAACTTAGTGATCTGCTACTGCAATCTCTTGATTGCATATATCAACTATCACTTTCTAGTTGTGTACTTAGTTTATCACTGTTCCTATCTCAGAACTGCTCATCTATTGGCACTGTTAGCAACACACTTGATACTAATTCTGTGAGTGAAACAGAGCACACGGAAAATTTCCCATTCACTAATTCTGAAAGCTCAGGTCATCAGAACTATAGCTTTATTCAAGGGTCAGAACTGGTTTCAAATATTCGACCTCCGGGCTCAAGCCATTGGTTACTTGTAAATCTTGCACTGGGTAAGATTTATGTGGGAAGATGCTCAGCAAAGAATGTTATGAATGAGGCGCATCAATTAAATAAGTTTTTGTCATCAGTTTCTGTTGGTGGTGAATTTCAGAGAATCAGTTGTGAAATTCAGGGTGGTTTCCTTTTCCTTGAAACAACAGCTTCGGCTACCTTATTGCGATGTTTTTCTTCATATCTTGATTGCTTCACAAATATTTTATCTGGCTCACAATCATCCGATAAGCACGTTGAAGAAGATAAGCCCATTGAAGAAGCTGATACTGCTGTAAATATGACTAGACCAGATAGTCATTCTGATAAGGACTGTATGCAAGAGACTCCTTGTACATCTCCACTGGTCAAAGGGGGACAGATGGAAGCTTTTAGCTTAAATATATCTCGTTTTTCTTGCGCTCTTGTGATTCAGGAAGAGAATGGTGCTGTACAGGAGCTTGTGCTTGAGATTGATGCCCATTTGAACGTTGAGTTGGAAAACATGCTAAGAAAATTTATATTTAAGCTTTCTCGCATATCAATCCTTTCTCAGGTCCTTCAAGAAATTTTGGAAAATAAAACCCAAAGTTCTCAAGTTTCTTCAGTCACATCGAATACTTTTCAATCTCATGCTGCATCAGGAGCGTCTACAGGTTCTCAGCACATGGACGAGATTCATCCTGTTAATAATGCAAGTAGTTCAAGACGTCCTGGATCACAGGAAGAGCACTCTGAACATAGTTCTCTGCATGAGGTATTTCGTCTAAGTCATCACAAATATATCCTAAAGGGTCAAGAACTAGCCTCCAGTGAGTGCGAGTTAAGACAGGAAGGGGGAACTGCCTTCATATCAGTTGAGAAGCCTTTAAATGAAGTTTGGGTTGGAAGCGGAACTATTTCATGTTTTGATATTACAATATCTCTATCTCAAATACAGATGCTTTTGTCTATGATTTCATCCTTTTCTGGGGTATTTGGGGAGGAGTTGATCAGTGAACCGGATAGAAGGCACTGGTCTAATGACGAGGAATTAAAAAATAGTGTGGAGACAATGGTTCCTAATGGTGCAATAGTGGCAATTCAGGATGTCCATCAACATATGTATTTTACTGTTGAGGGTAATGAGGATAAGTACAGCTTAGCGGGTGCAGTTCATTATTCTCTTGTGGGAGAAAGCGCTCTTTTCATGGTCAAGTATAACAATCAAAAGGGATGGAATTCATCAGTTTTGTGGTTCTCCTTGATATCGTTGCATGCCAAGAATGCTTCTGGGGAGCCATTGCGCTTGAACTACCGTCGAGGATCTGATTTTGTTGACGTCTCTAGTGCGAATGATAATGCAGGGGCACTTTGGACAGCGGTTTCTTGTGAGCCTGAAAGTTATGAGGGTGACATTGACTGGGAGCCCTACAATCAATTGGTTAAAAGGACCTTTTACCTTGTAAACAAAAAGAATGACTCTGCTGTTGCTATTGTAGATGGGATTCCAGAGTTTGTTAGAAAGCCTGGAAATCCAATCAAGTTGAAAGTGTTCCACAATGCTCCTACAGCTCATGACATAAAGATGGATAACTACCCTGGAGAGGCATCTGTGGCTCGTCCGCAACAGAGTGATGAAGGGAAAACTTCTGGGAAGGGTGGAAAGCTTCCTTGCATTGATGTTACATTTGACACAATTTCCTTGACCATTATCCATGAACTCGTAGATACAAAAGACATGCCTCTCCTTCGTTGTTGCATTGGCAGAACTGGACAGTCCAAACATGAACTTGAAGAGTCAAAAGACATGGCTCTCCTTGGTGGTTGCAGTGACAGAACCGAACGATCCAAACTTACTGTTCAAATTCTCCCTTCTAAAGTTAGGATTATAAGCTCCTTAACAACAGTGGTATATTACTTTGATGCACAAAGAAACAAATGGAGAGAACTTATCCACCCAGTTGAAACATGCCTTTTCTATCGTTCAAGCTTCCAAATTCAGAGTTCAGAAGCTGTTTCGCATGGAGTACCTGTTCATATCCATTGCAGAACTAAAGAGTTGAATATATCCCTATCCGAACTTTCATTGGACATACTTCTCTTTACAGTTGGGAAACTAAATTTAGCTGGTCCTTTCTCAGTGAGAAGTACTAAGATTTGGGCCAATTGTTGCAAGGTGGAGAACCAGTCAGGATTAAACCTTCTTTGTCAGTGTGATGAGCAAAGTGTAAAAGTTTCCAGAAGGCAGTCTACGTCCATTATTTTAAGGTGCTCGGATTTGGAAAACCAACCTCCAGAGATGGCATCAGTCATGTCAATCCGACTTACTGGTCCTAGATCTTCTTTGATGACCTCTCCAATTCATGTCTCTCACCTAGAAGCTCAAGCATTTGCTTGGAGAACACAAATAATGTCACTTAAAGATTCACAAACTTACCCTGGACCATTTGTTATAGTTGACGTTTCAAGGAAATCCCAGGATGGTTTGTCAATTCTTATTTCTCCTCTCGTAAGAATACACAATGAAACTGGATTGTCTATAAAGCTACGATTTCGACGATCTCAGCAGAAGGAAGATGTGTTTGCTTCAGTGGTGCTTAATGCTGGTGATACATATGATGACTCCATGGCCATGTTTGATGCTATAAATTTGTCTGGTGAAGAAAAGAAGGCCCTGAGGTCTTTAAGTCTTGGCAATTTCTTGTTCTCTTTTAGACCTGAAATTCCAGATGGCTTAATGAACTCTAAGAAATCAATTTCAGCAGAATGGTCAGATGATCTTAAAGGTGGAAAGGCAGTTCGTCTCTCTGGAATCTTTGATAAATTAAGCTATAAAGTGCGGAAGGCTTTCTTTAGTGAATCTGCAAAATCTTCCTTCAGCACTGCCCATTGTACTCTTAAATCGGAAGGGGCAAATACTGTCGACATGCATTTTTTGATTCAGAGTATAAGGAGAAATGTTCCTATTGTACAACCTGATAGGTCTATGAATCTCCTTGAAAATAGCAAATCACCAGTTGCCTTACAAGAGCAAAAGGATATTTATCTTCTTCCTACAGTGTGTGTTTCCAATTTATTGCATACGGAGATACATGTCTTTGTCAGTGAATCAGATGGACGTCCTACTATTGCGTCTGACAATGATAGGAATCAATCAACCATATCTTCTGGTTCCATGGTTGAATTTTATGCCAACCCTTCGATTATTTACTTCACAATCACACTGACTGGTTATGATGCAAGCTGCAAACCAGCGAACAGCAGTGATTGGGTCAAAAAGTTACTGAAGCAGAAAAGTGATGTGCCTTCTGTGGACATTGATCTGGATTTTGGTGGGGGAAAGTATTCTGCTGCCTTAAGATTGTCTCGAGGGAGCAGAGGCACATTAGAGGCTGCTATTTTCACATCATACTCCCTGAAAAATGATACAGAATTTGGCCTTTGTTTCTTTGTGTCTAATAAGAGGCCCCTTTCTAGGGATGAAGCAGAGAAGTATGGTTCTAGCATTCCTTCAGAATTTGGATTATATTTGCCTCCAAAGTCAACCAGATCATGGTTCTTAAAATCCAGCAAAGTGCGTCTCAAATTGCTAAAAGATAATGCATCGGAGATGCTTATCGACTTGGATTCTTTATCAGGACTTGCGGAGATAAGTTTGGAAACAGAGGAAGGATCTGGAATCAGATCTATTACAAAGCTTGGGGTTTCCACAGGACCACCTTTGAGTAAAGTGGTTGTGCCATCACAAATAGTAACTATGGTCCCAAGACATGTTGTAATAAATGAATCAGGAGAAAACATCATTGTTCGCCAATGTTATTTGCAGGATGACACTGTTGGCATGATCCCCGTCAACAGTAAACAGAGGGCGCCTCTACAGCTGTGGAATGTGATAGACAAGAAGAGAGATATCAGTTTGTTTGAGCGTGTTATGAAAAAGCACAGAAAAGCTAATGATGATTCACCAATATATCTCCAGTTTCGATTGAATGAGTCTAAGTTAGGTTGGTCGGGGCCAGTATGCATTGCTTCTCTAGGAAGATTTTTCCTCAAGTTCAAAAGGCAGCAATTGGACCAAGTGACAGCACTAGAAAGCAATGTAACAGAATTCGCTTCTGTTCATCTTGTTGAAGAAGGCTCTACTCTTGGTTTACACTTCCATAAACCTCCAAATGTCAGTCTCCCATACCGAATTGAGAATTGCTTGCCTGATGTGTCGATAACTTACTACCAGAAGGATTCATCAGAGCCAGAGATTATTGCATCGGAAAGTTGCACTGATTATGTTTGGGATGATTTGACTCTTCCACATAAGTTGGTCGTCAGGATCAATGATAGTCTTCTACTACGTGAAATTAACTTGGATAAGGTGAGAGCATGGAAGCCTTTCTACAAAACCAGGCAACGGAGTGGATTGGCAACTCATTTACCATTTGGAAAAGACTCAGGGGACAAGAAGGGTGATTTTGGTGAGTTTAATGGCATGGAGATGATGAAGGTGGGGTTTGAAGTATATGCAGATGGTCCAACCCGGGTCTTAAGATTTTGTGAAATTTCTAGCAGCCACAAGGGAGATAAAATGTTTCAATCATGCGAGAAGATTCAACTAAGACTTAATCAGTTTACAATTCACCTTCTTGAACATGAAAAGCAGGATGGAGAAGATATGGAGCCGCCTGGGTATACACCAATCTTAGCTGCAAGAATTGGGAATATTAACTTTGATTCTGTCTTTACATATGAGCAAAAGTTTAGCCAGATCAGTATACAGTCATTGAATTTGGAGAACAAGTGGGTGGGTGCTCCTTTTGCAGCAATGCTTCGTAGACATCAATCAGACTTTGATGATTCAAATGATTGTGTACTCAAAATTGTCATTGTCTTGCTGTCAACCAGTTCCAATGTTGTACAAGTTAAGTACTCGTCTATTGCTCTGCAGCCAATGGATTTAAATCTTGATGAGGAGACATTAATGAAAATTGTCCCATTTTGGAGAACATCTCTTAGTGAGGCGAAGAGTAGCCAGTATTATTTTGATCATTTTGAGATCCATCCGATAAAGATTATTGCAAACTTTCTTCCTGGCGAGTCATATTCAAGTTATAGCTCAACTGAGGAGACTCTAAGGTCCTTGCTGCACAGTGTAGTTAAGGTCCCTGCGATAAAAAATAAGGTTGTAGAGCTCAATGGTGTTATGGTCACTCATGCTCTTATAACGATGCGTGAATTACTTATCAAATGTGCACAACATTATTCATGGTATGCCATGAGGGCTATATATATTGCAAAGGGAAGTCCATTGCTTCCACCAGATTTTGTGTCAATTTTTGATGACTTGGCTTCTTCGTCTCTTGATGTCTTCTTTGATCCTTCTCGTGCATTAGTGACTCTTCCAGGTTTGACTTTAGGTACCTTCAAGTTAATCAGTAAATGTATCGATGGTAAAGGATTCTTGGGGACAAAACGCTATTTTGGTGACCTAGGAAAATCTTTGAGGACGGCAGGGTCAAATGTATTGTTTGCTGCAGTCACTGAAATATCAGACTCTATTCTGAAAGGAGCAGAAGCAAGTGGTTTTGATGGAGTGGTCACGGGCTTTCACCATGGAATATTGAAATTGGCTATGGAGCCATCATTATTGGGAACTGCTTTGATGGAAGGTGGCCCAGATAGAAAGATTAAGCTTGACCGCAGTCCTGCTGTTGATGAGTTATATATCGAAGGATACTTGCAAGCGATGTTGGATACGATGTATAGACAAGAATATTTGAGAGTCAGAGTCATCGAGAATCAGGTTTACCTCAAAAACCTGCCCCCCAACAGTTCCCTTATAAACGAGATTATGGATCGTGTGAAGGGGTTTCTTGTGAGCAAGTCACTTCTGAAAGGAGACCCCTCAATAACATCTCGCCCCTTGGGTCATCTTCGAGGTGAACGTGAGTGGAGAATCGGCCCAACTGTGCTGACATTAGGTGAGCATCTGTTCGTGAGTTTCGCAATCCGAATCCTGCGGAAGCAAGCTAACAAGTGCATCGCCAACATCAAGTGGAAGCCAGAGAGCGATGGTGGTCGATCGATTGTCCCTGCAAGCTCCTCGGAAGAAGTGGTGAAGGGTAAGTTCATTTGGAAATGGGGAAGTGGGATCGGCAAGTTTGTTTTGTCAGCCATAGTAGCATATATAGATGGACGGTTATGTCGTTCTATTCCTAATCCTGTAGCTCGCCGCATCGTTAGCGGCTTTCTGTTGACTTTCCTTGATAACAACAACAGCAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHR-BD VPS13_C

Protein Analysis

3238

Amino Acids

362.18

Weight (kDa)

6.4

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_VAB PF25036 2158 - 2577 1.1e-18 Vacuolar-sorting associated protein 13, adaptor binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 5327, 8651, 9269
AasI GACNNNNNNGTC 5 cut(s) 3771, 5766, 8563, 8941, 9630
AatII GACGTC 3 cut(s) 4168, 4779, 6559
Acc36I ACCTGC 2 cut(s) 686, 9255
Acc65I GGTACC 1 cut(s) 8846
AccB1I GGYRCC 2 cut(s) 7306, 8846
AccB7I CCANNNNNTGG 3 cut(s) 2446, 2581, 6990
AccBSI CCGCTC 2 cut(s) 12, 38
AccI GTMKAC 7 cut(s) 768, 4106, 5687, 6360, 8120, 8203, 8263
AccII CGCG 2 cut(s) 107, 137
AccIII TCCGGA 1 cut(s) 811
AclI AACGTT 1 cut(s) 3945
AcoI YGGCCR 4 cut(s) 33, 47, 2357, 6066
AcyI GRCGYC 5 cut(s) 258, 4165, 4776, 6556, 7307
AdeI CACNNNGTG 1 cut(s) 109
AfeI AGCGCT 1 cut(s) 4636
AflII CTTAAG 2 cut(s) 6793, 7975
AflIII ACRYGT 6 cut(s) 709, 1572, 1824, 2206, 6529, 7207
AhdI GACNNNNNGTC 1 cut(s) 2076
AjuI GAANNNNNNNTTGG 8 cut(s) 501, 533, 1982, 2014, 3935, 3967, 4323, 4355
AloI GAACNNNNNNTCC 4 cut(s) 5454, 5486, 6219, 6251
Alw44I GTGCAC 3 cut(s) 2333, 2945, 8679
AlwNI CAGNNNCTG 5 cut(s) 2405, 2446, 3557, 5450, 8969
Ama87I CYCGRG 4 cut(s) 74, 279, 6804, 7968
Aor13HI TCCGGA 1 cut(s) 811
Aor51HI AGCGCT 1 cut(s) 4636
ApaI GGGCCC 1 cut(s) 2397
ApaLI GTGCAC 3 cut(s) 2333, 2945, 8679
AseI ATTAAT 1 cut(s) 8408
Asp700I GAANNNNTTC 6 cut(s) 1749, 4354, 4988, 6284, 6781, 7823
Asp718I GGTACC 1 cut(s) 8846
AspA2I CCTAGG 1 cut(s) 8917
AspLEI GCGC 7 cut(s) 142, 2866, 3526, 3878, 4637, 4743, 7309
AsuC2I CCSGG 4 cut(s) 2088, 3438, 7969, 7970
AsuNHI GCTAGC 1 cut(s) 898
AvaI CYCGRG 4 cut(s) 74, 279, 6804, 7968
AvrII CCTAGG 1 cut(s) 8917
AxyI CCTNAGG 2 cut(s) 375, 6113
BaeGI GKGCMC 5 cut(s) 2337, 2397, 2949, 4807, 8683
BaeI ACNNNNGTAYC 2 cut(s) 3735, 3768
BalI TGGCCA 2 cut(s) 2359, 6068
BanI GGYRCC 2 cut(s) 7306, 8846
BanII GRGCYC 6 cut(s) 81, 650, 2397, 3443, 4866, 8622
BarI GAAGNNNNNNTAC 6 cut(s) 1572, 1604, 5671, 5703, 7811, 7843
BauI CACGAG 1 cut(s) 8811
BbsI GAAGAC 4 cut(s) 593, 3126, 7769, 8788
BbvCI CCTCAGC 1 cut(s) 2398
BceAI ACGGC 2 cut(s) 34, 8952
BcgI CGANNNNNNTGC 2 cut(s) 9513, 9547
BciVI GTATCC 4 cut(s) 319, 334, 9155, 9175
BclI TGATCA 5 cut(s) 93, 1786, 3175, 4446, 8473
BcnI CCSGG 4 cut(s) 2088, 3438, 7969, 7970
BfoI RGCGCY 3 cut(s) 143, 4638, 7310
BfrI CTTAAG 2 cut(s) 6793, 7975
BfuAI ACCTGC 2 cut(s) 686, 9255
BfuI GTATCC 4 cut(s) 319, 334, 9155, 9175
BglI GCCNNNNNGGC 1 cut(s) 8708
BglII AGATCT 3 cut(s) 1369, 5774, 7121
BlnI CCTAGG 1 cut(s) 8917
BlpI GCTNAGC 2 cut(s) 3499, 4597
BmcAI AGTACT 4 cut(s) 1880, 3172, 5587, 8357
BmeRI GACNNNNNGTC 1 cut(s) 2076
BmeT110I CYCGRG 4 cut(s) 74, 279, 6804, 7968
BmrI ACTGGG 3 cut(s) 3482, 4867, 5390
BmtI GCTAGC 1 cut(s) 902
BmuI ACTGGG 3 cut(s) 3482, 4867, 5390
BoxI GACNNNNGTC 1 cut(s) 9129
BpiI GAAGAC 4 cut(s) 593, 3126, 7769, 8788
BplI GAGNNNNNCTC 4 cut(s) 7294, 7326, 8422, 8454
BpmI CTGGAG 6 cut(s) 1306, 2602, 4249, 5058, 5715, 7397
Bpu10I CCTNAGC 3 cut(s) 2398, 2490, 3376
Bpu1102I GCTNAGC 2 cut(s) 3499, 4597
BpuEI CTTGAG 5 cut(s) 3427, 3944, 4035, 5805, 7472
BpuMI CCSGG 4 cut(s) 2088, 3438, 7969, 7970
Bsa29I ATCGAT 2 cut(s) 8874, 9512
BsaAI YACGTR 1 cut(s) 7787
BsaBI GATNNNNATC 8 cut(s) 1624, 2008, 2456, 4548, 6480, 6585, 7052, 8388
BsaHI GRCGYC 5 cut(s) 258, 4165, 4776, 6556, 7307
BsaI GGTCTC 2 cut(s) 2063, 9321
BsaWI WCCGGW 3 cut(s) 123, 811, 4456
BsaXI ACNNNNNCTCC 6 cut(s) 5454, 5484, 5609, 5639, 8213, 8243
Bse21I CCTNAGG 2 cut(s) 375, 6113
Bse8I GATNNNNATC 8 cut(s) 1624, 2008, 2456, 4548, 6480, 6585, 7052, 8388
BseAI TCCGGA 1 cut(s) 811
BseCI ATCGAT 2 cut(s) 8874, 9512
BseJI GATNNNNATC 8 cut(s) 1624, 2008, 2456, 4548, 6480, 6585, 7052, 8388
BseRI GAGGAG 6 cut(s) 2867, 4454, 5931, 8414, 8567, 9520
BseSI GKGCMC 5 cut(s) 2337, 2397, 2949, 4807, 8683
BseX3I CGGCCG 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 2061
BsgI GTGCAG 4 cut(s) 754, 1386, 4626, 8558
Bsh1236I CGCG 2 cut(s) 107, 137
Bsh1285I CGRYCG 2 cut(s) 50, 9512
BshNI GGYRCC 2 cut(s) 7306, 8846
BshVI ATCGAT 2 cut(s) 8874, 9512
BsiEI CGRYCG 2 cut(s) 50, 9512
BsiHKCI CYCGRG 4 cut(s) 74, 279, 6804, 7968
BsiSI CCGG 8 cut(s) 22, 68, 124, 812, 2088, 3437, 4457, 7969
BsmBI CGTCTC 4 cut(s) 4783, 6245, 7022, 8790
BsmI GAATGC 3 cut(s) 836, 4726, 6942
Bso31I GGTCTC 2 cut(s) 2063, 9321
BsoBI CYCGRG 4 cut(s) 74, 279, 6804, 7968
Bsp120I GGGCCC 1 cut(s) 2393
Bsp13I TCCGGA 1 cut(s) 811
Bsp1407I TGTACA 4 cut(s) 3809, 3907, 6406, 8344
Bsp1720I GCTNAGC 2 cut(s) 3499, 4597
Bsp19I CCATGG 3 cut(s) 6063, 6612, 9040
BspDI ATCGAT 2 cut(s) 8874, 9512
BspEI TCCGGA 1 cut(s) 811
BspFNI CGCG 2 cut(s) 107, 137
BspHI TCATGA 1 cut(s) 5011
BspMAI CTGCAG 3 cut(s) 2761, 8376, 8965
BspMI ACCTGC 2 cut(s) 686, 9255
BspOI GCTAGC 1 cut(s) 902
BspQI GCTCTTC 2 cut(s) 57, 4176
BspT107I GGYRCC 2 cut(s) 7306, 8846
BspTI CTTAAG 2 cut(s) 6793, 7975
BspTNI GGTCTC 2 cut(s) 2063, 9321
BsrBI CCGCTC 2 cut(s) 12, 38
BsrGI TGTACA 4 cut(s) 3809, 3907, 6406, 8344
BssNAI GTATAC 2 cut(s) 8121, 8204
BssNI GRCGYC 5 cut(s) 258, 4165, 4776, 6556, 7307
BssSI CACGAG 1 cut(s) 8811
BssT1I CCWWGG 6 cut(s) 5254, 6063, 6612, 8917, 9040, 9351
Bst1107I GTATAC 2 cut(s) 8121, 8204
Bst2BI CACGAG 1 cut(s) 8811
Bst6I CTCTTC 9 cut(s) 57, 1575, 3888, 4176, 5226, 7334, 7746, 8447, 8832
BstACI GRCGYC 5 cut(s) 258, 4165, 4776, 6556, 7307
BstAFI CTTAAG 2 cut(s) 6793, 7975
BstAPI GCANNNNNTGC 1 cut(s) 3031
BstAUI TGTACA 4 cut(s) 3809, 3907, 6406, 8344
BstBAI YACGTR 1 cut(s) 7787
BstDSI CCRYGG 5 cut(s) 50, 135, 6063, 6612, 9040
BstEII GGTNACC 1 cut(s) 8912
BstENI CCTNNNNNAGG 1 cut(s) 4007
BstFNI CGCG 2 cut(s) 107, 137
BstH2I RGCGCY 3 cut(s) 143, 4638, 7310
BstHHI GCGC 7 cut(s) 142, 2866, 3526, 3878, 4637, 4743, 7309
BstMCI CGRYCG 2 cut(s) 50, 9512
BstPAI GACNNNNGTC 1 cut(s) 9129
BstPI GGTNACC 1 cut(s) 8912
BstSLI GKGCMC 5 cut(s) 2337, 2397, 2949, 4807, 8683
BstUI CGCG 2 cut(s) 107, 137
BstV2I GAAGAC 4 cut(s) 593, 3126, 7769, 8788
BstX2I RGATCY 9 cut(s) 574, 1369, 1619, 2499, 4760, 5774, 7109, 7121, 8484
BstYI RGATCY 9 cut(s) 574, 1369, 1619, 2499, 4760, 5774, 7109, 7121, 8484
BstZ17I GTATAC 2 cut(s) 8121, 8204
BstZI CGGCCG 1 cut(s) 47
Bsu15I ATCGAT 2 cut(s) 8874, 9512
Bsu36I CCTNAGG 2 cut(s) 375, 6113
BsuI GTATCC 4 cut(s) 319, 334, 9155, 9175
BsuTUI ATCGAT 2 cut(s) 8874, 9512
BtgI CCRYGG 5 cut(s) 50, 135, 6063, 6612, 9040
BtgZI GCGATG 4 cut(s) 3658, 9188, 9454, 9513
BtsI GCAGTG 5 cut(s) 673, 2896, 5272, 6318, 6706
BveI ACCTGC 2 cut(s) 686, 9255
CaiI CAGNNNCTG 5 cut(s) 2405, 2446, 3557, 5450, 8969
CciI TCATGA 1 cut(s) 5011
CfoI GCGC 7 cut(s) 142, 2866, 3526, 3878, 4637, 4743, 7309
Cfr42I CCGCGG 1 cut(s) 138
Cfr9I CCCGGG 1 cut(s) 7968
CseI GACGC 5 cut(s) 247, 2416, 4092, 6558, 7004
CspCI CAANNNNNGTGG 2 cut(s) 7734, 7769
DinI GGCGCC 1 cut(s) 7308
DraI TTTAAA 3 cut(s) 1912, 4326, 8388
DraIII CACNNNGTG 1 cut(s) 109
DrdI GACNNNNNNGTC 5 cut(s) 3771, 5766, 8563, 8941, 9630
DriI GACNNNNNGTC 1 cut(s) 2076
DseDI GACNNNNNNGTC 5 cut(s) 3771, 5766, 8563, 8941, 9630
EaeI YGGCCR 4 cut(s) 33, 47, 2357, 6066
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 9 cut(s) 57, 1575, 3888, 4176, 5226, 7334, 7746, 8447, 8832
Eam1105I GACNNNNNGTC 1 cut(s) 2076
EarI CTCTTC 9 cut(s) 57, 1575, 3888, 4176, 5226, 7334, 7746, 8447, 8832
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 3 cut(s) 79, 648, 8620
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 6 cut(s) 5254, 6063, 6612, 8917, 9040, 9351
Eco147I AGGCCT 1 cut(s) 612
Eco24I GRGCYC 6 cut(s) 81, 650, 2397, 3443, 4866, 8622
Eco31I GGTCTC 2 cut(s) 2063, 9321
Eco32I GATATC 4 cut(s) 1596, 2458, 4704, 7348
Eco47III AGCGCT 1 cut(s) 4636
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 3 cut(s) 79, 648, 8620
Eco81I CCTNAGG 2 cut(s) 375, 6113
Eco88I CYCGRG 4 cut(s) 74, 279, 6804, 7968
Eco91I GGTNACC 1 cut(s) 8912
EcoICRI GAGCTC 3 cut(s) 79, 648, 8620
EcoNI CCTNNNNNAGG 1 cut(s) 4007
EcoO109I RGGNCCY 9 cut(s) 2393, 2394, 2913, 4012, 4887, 6109, 6903, 8565, 8590
EcoO65I GGTNACC 1 cut(s) 8912
EcoRI GAATTC 2 cut(s) 4675, 7544
EcoRV GATATC 4 cut(s) 1596, 2458, 4704, 7348
EcoT14I CCWWGG 6 cut(s) 5254, 6063, 6612, 8917, 9040, 9351
EcoT22I ATGCAT 3 cut(s) 6369, 7042, 7463
EcoT38I GRGCYC 6 cut(s) 81, 650, 2397, 3443, 4866, 8622
EgeI GGCGCC 1 cut(s) 7308
EheI GGCGCC 1 cut(s) 7308
ErhI CCWWGG 6 cut(s) 5254, 6063, 6612, 8917, 9040, 9351
Esp3I CGTCTC 4 cut(s) 4783, 6245, 7022, 8790
FalI AAGNNNNNCTT 6 cut(s) 3090, 3122, 4580, 4612, 6272, 6304
FauI CCCGC 1 cut(s) 4594
FauNDI CATATG 3 cut(s) 4557, 6052, 8176
FbaI TGATCA 5 cut(s) 93, 1786, 3175, 4446, 8473
FblI GTMKAC 7 cut(s) 768, 4106, 5687, 6360, 8120, 8203, 8263
FriOI GRGCYC 6 cut(s) 81, 650, 2397, 3443, 4866, 8622
GlaI GCGC 7 cut(s) 141, 2865, 3525, 3877, 4636, 4742, 7308
GsaI CCCAGC 1 cut(s) 2065
GsuI CTGGAG 6 cut(s) 1306, 2602, 4249, 5058, 5715, 7397
HaeII RGCGCY 3 cut(s) 143, 4638, 7310
HapII CCGG 8 cut(s) 22, 68, 124, 812, 2088, 3437, 4457, 7969
HgaI GACGC 5 cut(s) 247, 2416, 4092, 6558, 7004
HhaI GCGC 7 cut(s) 142, 2866, 3526, 3878, 4637, 4743, 7309
Hin1I GRCGYC 5 cut(s) 258, 4165, 4776, 6556, 7307
Hin6I GCGC 7 cut(s) 140, 2864, 3524, 3876, 4635, 4741, 7307
HinP1I GCGC 7 cut(s) 140, 2864, 3524, 3876, 4635, 4741, 7307
HincII GTYRAC 8 cut(s) 701, 4774, 5896, 6361, 6981, 7291, 8328, 9684
HindII GTYRAC 8 cut(s) 701, 4774, 5896, 6361, 6981, 7291, 8328, 9684
HindIII AAGCTT 8 cut(s) 314, 356, 3843, 3983, 5102, 5425, 7133, 9119
HpaII CCGG 8 cut(s) 22, 68, 124, 812, 2088, 3437, 4457, 7969
Hpy99I CGWCG 3 cut(s) 161, 4758, 5997
Hsp92I GRCGYC 5 cut(s) 258, 4165, 4776, 6556, 7307
HspAI GCGC 7 cut(s) 140, 2864, 3524, 3876, 4635, 4741, 7307
KasI GGCGCC 1 cut(s) 7306
Kpn2I TCCGGA 1 cut(s) 811
KpnI GGTACC 1 cut(s) 8850
Ksp22I TGATCA 5 cut(s) 93, 1786, 3175, 4446, 8473
KspI CCGCGG 1 cut(s) 138
LguI GCTCTTC 2 cut(s) 57, 4176
MbiI CCGCTC 2 cut(s) 12, 38
MfeI CAATTG 3 cut(s) 4874, 5602, 7505
MflI RGATCY 9 cut(s) 574, 1369, 1619, 2499, 4760, 5774, 7109, 7121, 8484
MlsI TGGCCA 2 cut(s) 2359, 6068
MluNI TGGCCA 2 cut(s) 2359, 6068
Mly113I GGCGCC 1 cut(s) 7307
MmeI TCCRAC 6 cut(s) 1812, 3933, 4321, 5782, 7988, 9159
Mox20I TGGCCA 2 cut(s) 2359, 6068
Mph1103I ATGCAT 3 cut(s) 6369, 7042, 7463
MroI TCCGGA 1 cut(s) 811
MroXI GAANNNNTTC 6 cut(s) 1749, 4354, 4988, 6284, 6781, 7823
MscI TGGCCA 2 cut(s) 2359, 6068
MslI CAYNNNNRTG 6 cut(s) 1159, 1455, 2246, 5021, 6068, 7925
Msp20I TGGCCA 2 cut(s) 2359, 6068
MspA1I CMGCKG 5 cut(s) 137, 959, 1142, 4817, 7318
MspCI CTTAAG 2 cut(s) 6793, 7975
MspI CCGG 8 cut(s) 22, 68, 124, 812, 2088, 3437, 4457, 7969
MunI CAATTG 3 cut(s) 4874, 5602, 7505
Mva1269I GAATGC 3 cut(s) 836, 4726, 6942
MvnI CGCG 2 cut(s) 107, 137
NarI GGCGCC 1 cut(s) 7307
NciI CCSGG 4 cut(s) 2088, 3438, 7969, 7970
NcoI CCATGG 3 cut(s) 6063, 6612, 9040
NdeI CATATG 3 cut(s) 4557, 6052, 8176
NheI GCTAGC 1 cut(s) 898
NmeAIII GCCGAG 1 cut(s) 132
NsiI ATGCAT 3 cut(s) 6369, 7042, 7463
PaeI GCATGC 2 cut(s) 395, 4715
PaeR7I CTCGAG 2 cut(s) 74, 6804
PagI TCATGA 1 cut(s) 5011
PceI AGGCCT 1 cut(s) 612
PciI ACATGT 5 cut(s) 1572, 1824, 2206, 6529, 7207
PciSI GCTCTTC 2 cut(s) 57, 4176
PcsI WCGNNNNNNNCGW 4 cut(s) 2316, 5992, 9370, 9631
PctI GAATGC 3 cut(s) 836, 4726, 6942
PdmI GAANNNNTTC 6 cut(s) 1749, 4354, 4988, 6284, 6781, 7823
PflMI CCANNNNNTGG 3 cut(s) 2446, 2581, 6990
PfoI TCCNGGA 1 cut(s) 4168
Ple19I CGATCG 1 cut(s) 9512
PluTI GGCGCC 1 cut(s) 7310
Ppu21I YACGTR 1 cut(s) 7787
PpuMI RGGWCCY 5 cut(s) 2913, 4012, 4887, 8565, 8590
PscI ACATGT 5 cut(s) 1572, 1824, 2206, 6529, 7207
PshAI GACNNNNGTC 1 cut(s) 9129
PshBI ATTAAT 1 cut(s) 8408
PsiI TTATAA 3 cut(s) 5327, 8651, 9269
Psp124BI GAGCTC 3 cut(s) 81, 650, 8622
Psp1406I AACGTT 1 cut(s) 3945
Psp5II RGGWCCY 5 cut(s) 2913, 4012, 4887, 8565, 8590
PspEI GGTNACC 1 cut(s) 8912
PspFI CCCAGC 1 cut(s) 2061
PspOMI GGGCCC 1 cut(s) 2393
PspPPI RGGWCCY 5 cut(s) 2913, 4012, 4887, 8565, 8590
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 3 cut(s) 2761, 8376, 8965
PstNI CAGNNNCTG 5 cut(s) 2405, 2446, 3557, 5450, 8969
PsuI RGATCY 9 cut(s) 574, 1369, 1619, 2499, 4760, 5774, 7109, 7121, 8484
PvuI CGATCG 1 cut(s) 9512
PvuII CAGCTG 3 cut(s) 959, 1142, 7318
RseI CAYNNNNRTG 6 cut(s) 1159, 1455, 2246, 5021, 6068, 7925
SacI GAGCTC 3 cut(s) 81, 650, 8622
SacII CCGCGG 1 cut(s) 138
SalI GTCGAC 1 cut(s) 6359
SapI GCTCTTC 2 cut(s) 57, 4176
ScaI AGTACT 4 cut(s) 1880, 3172, 5587, 8357
SfoI GGCGCC 1 cut(s) 7308
Sfr274I CTCGAG 2 cut(s) 74, 6804
Sfr303I CCGCGG 1 cut(s) 138
SgrBI CCGCGG 1 cut(s) 138
SlaI CTCGAG 2 cut(s) 74, 6804
SmaI CCCGGG 1 cut(s) 7970
SmiI ATTTAAAT 1 cut(s) 8388
SmiMI CAYNNNNRTG 6 cut(s) 1159, 1455, 2246, 5021, 6068, 7925
SmlI CTYRAG 9 cut(s) 74, 3442, 3923, 4050, 5820, 6793, 6804, 7487, 7975
SmoI CTYRAG 9 cut(s) 74, 3442, 3923, 4050, 5820, 6793, 6804, 7487, 7975
SphI GCATGC 2 cut(s) 395, 4715
SseBI AGGCCT 1 cut(s) 612
SspDI GGCGCC 1 cut(s) 7306
SstI GAGCTC 3 cut(s) 81, 650, 8622
StuI AGGCCT 1 cut(s) 612
StyI CCWWGG 6 cut(s) 5254, 6063, 6612, 8917, 9040, 9351
SwaI ATTTAAAT 1 cut(s) 8388
TaqII GACCGA 1 cut(s) 740
TauI GCSGC 9 cut(s) 15, 38, 49, 140, 2555, 2669, 8113, 9663, 9675
TspGWI ACGGA 4 cut(s) 1383, 3359, 6536, 7858
TspMI CCCGGG 1 cut(s) 7968
Van91I CCANNNNNTGG 3 cut(s) 2446, 2581, 6990
Vha464I CTTAAG 2 cut(s) 6793, 7975
VneI GTGCAC 3 cut(s) 2333, 2945, 8679
VspI ATTAAT 1 cut(s) 8408
XagI CCTNNNNNAGG 1 cut(s) 4007
XhoI CTCGAG 2 cut(s) 74, 6804
XmaI CCCGGG 1 cut(s) 7968
XmaJI CCTAGG 1 cut(s) 8917
XmiI GTMKAC 7 cut(s) 768, 4106, 5687, 6360, 8120, 8203, 8263
XmnI GAANNNNTTC 6 cut(s) 1749, 4354, 4988, 6284, 6781, 7823
ZraI GACGTC 3 cut(s) 4166, 4777, 6557
ZrmI AGTACT 4 cut(s) 1880, 3172, 5587, 8357
Zsp2I ATGCAT 3 cut(s) 6369, 7042, 7463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.