regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50380 AT3G50380 AT3G50380 AT3G50380 |
| fragaria_vesca | FvH4_1g14580 FvH4_1g14580 FvH4_1g14580 FvH4_1g14580 FvH4_1g14580 FvH4_1g14580 FvH4_1g14580 FvH4_1g14580 FvH4_1g14580 FvH4_5g25081 FvH4_5g34340 |
| malus_domestica | MD02G1159300.v1.1 |
| prunus_persica | Prupe.7G144700_v2.0.a1 Prupe.7G144700_v2.0.a1 Prupe.7G144700_v2.0.a1 |
| pyrus_communis | pycom02g12560 |
| rosa_chinensis | RchiOBHm_Chr2g0103341 |
| rosa_laevigata | RLG00000017225 |
| rosa_multiflora | Rmu_sc0001555.1_g000014 Rmu_sc0009003.1_g000002 Rmu_sc0010053.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00139720 |
| rosa_rugosa | Rorug02G0114000 |
| rosa_samantha | Rh2AG162300 Rh2BG169400 Rh2CG169400 Rh2DG168200 |
| rosa_wichuraiana | Rw0G019420 Rw2G012750 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 165 |
| AccIII | TCCGGA | 1 cut(s) | 348 |
| AclWI | GGATC | 2 cut(s) | 233, 340 |
| AfaI | GTAC | 1 cut(s) | 418 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 181, 355 |
| AjiI | CACGTC | 1 cut(s) | 227 |
| AluBI | AGCT | 3 cut(s) | 31, 368, 438 |
| AluI | AGCT | 3 cut(s) | 31, 368, 438 |
| AlwI | GGATC | 2 cut(s) | 233, 340 |
| Aor13HI | TCCGGA | 1 cut(s) | 348 |
| AoxI | GGCC | 1 cut(s) | 10 |
| AspS9I | GGNCC | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 3 cut(s) | 260, 290, 332 |
| AxyI | CCTNAGG | 1 cut(s) | 262 |
| BccI | CCATC | 1 cut(s) | 404 |
| BciVI | GTATCC | 1 cut(s) | 65 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BfuAI | ACCTGC | 1 cut(s) | 165 |
| BfuI | GTATCC | 1 cut(s) | 65 |
| BmgBI | CACGTC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 11 |
| BmsI | GCATC | 3 cut(s) | 334, 342, 387 |
| BpuEI | CTTGAG | 1 cut(s) | 134 |
| Bsa29I | ATCGAT | 1 cut(s) | 422 |
| BsaWI | WCCGGW | 1 cut(s) | 348 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 181, 355 |
| Bse21I | CCTNAGG | 1 cut(s) | 262 |
| BseAI | TCCGGA | 1 cut(s) | 348 |
| BseCI | ATCGAT | 1 cut(s) | 422 |
| BseGI | GGATG | 1 cut(s) | 357 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 181, 355 |
| BseMII | CTCAG | 1 cut(s) | 456 |
| BseRI | GAGGAG | 2 cut(s) | 197, 430 |
| BseYI | CCCAGC | 1 cut(s) | 355 |
| BshFI | GGCC | 1 cut(s) | 12 |
| BshVI | ATCGAT | 1 cut(s) | 422 |
| BsiSI | CCGG | 1 cut(s) | 349 |
| BslFI | GGGAC | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 181, 355 |
| BsmFI | GGGAC | 1 cut(s) | 413 |
| BsnI | GGCC | 1 cut(s) | 12 |
| Bsp13I | TCCGGA | 1 cut(s) | 348 |
| Bsp143I | GATC | 3 cut(s) | 34, 238, 345 |
| BspANI | GGCC | 1 cut(s) | 12 |
| BspCNI | CTCAG | 1 cut(s) | 455 |
| BspDI | ATCGAT | 1 cut(s) | 422 |
| BspEI | TCCGGA | 1 cut(s) | 348 |
| BspMI | ACCTGC | 1 cut(s) | 165 |
| BspPI | GGATC | 2 cut(s) | 233, 340 |
| BssMI | GATC | 3 cut(s) | 34, 238, 345 |
| Bst4CI | ACNGT | 2 cut(s) | 170, 307 |
| BstC8I | GCNNGC | 3 cut(s) | 81, 366, 436 |
| BstDEI | CTNAG | 2 cut(s) | 262, 442 |
| BstEII | GGTNACC | 1 cut(s) | 266 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 179 |
| BstF5I | GGATG | 1 cut(s) | 357 |
| BstKTI | GATC | 3 cut(s) | 37, 241, 348 |
| BstMBI | GATC | 3 cut(s) | 34, 238, 345 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 361 |
| BstPI | GGTNACC | 1 cut(s) | 266 |
| BstX2I | RGATCY | 1 cut(s) | 238 |
| BstYI | RGATCY | 1 cut(s) | 238 |
| Bsu15I | ATCGAT | 1 cut(s) | 422 |
| Bsu36I | CCTNAGG | 1 cut(s) | 262 |
| BsuI | GTATCC | 1 cut(s) | 65 |
| BsuRI | GGCC | 1 cut(s) | 12 |
| BsuTUI | ATCGAT | 1 cut(s) | 422 |
| BtgZI | GCGATG | 2 cut(s) | 98, 364 |
| BtrI | CACGTC | 1 cut(s) | 227 |
| BtsCI | GGATG | 1 cut(s) | 357 |
| BveI | ACCTGC | 1 cut(s) | 165 |
| Cac8I | GCNNGC | 3 cut(s) | 81, 366, 436 |
| Cfr13I | GGNCC | 1 cut(s) | 11 |
| ClaI | ATCGAT | 1 cut(s) | 422 |
| Csp6I | GTAC | 1 cut(s) | 417 |
| CviJI | RGCY | 6 cut(s) | 12, 31, 300, 368, 400, 438 |
| CviKI_1 | RGCY | 6 cut(s) | 12, 31, 300, 368, 400, 438 |
| CviQI | GTAC | 1 cut(s) | 417 |
| DdeI | CTNAG | 2 cut(s) | 262, 442 |
| DpnI | GATC | 3 cut(s) | 36, 240, 347 |
| DpnII | GATC | 3 cut(s) | 34, 238, 345 |
| Eco81I | CCTNAGG | 1 cut(s) | 262 |
| Eco91I | GGTNACC | 1 cut(s) | 266 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 179 |
| EcoO65I | GGTNACC | 1 cut(s) | 266 |
| FaiI | YATR | 4 cut(s) | 63, 179, 191, 463 |
| FaqI | GGGAC | 1 cut(s) | 413 |
| FokI | GGATG | 1 cut(s) | 364 |
| FspBI | CTAG | 1 cut(s) | 230 |
| GsaI | CCCAGC | 1 cut(s) | 359 |
| HaeIII | GGCC | 1 cut(s) | 12 |
| HapII | CCGG | 1 cut(s) | 349 |
| HindIII | AAGCTT | 1 cut(s) | 29 |
| HinfI | GANTC | 4 cut(s) | 120, 126, 136, 294 |
| HpaII | CCGG | 1 cut(s) | 349 |
| HphI | GGTGA | 3 cut(s) | 260, 290, 332 |
| Hpy166II | GTNNAC | 2 cut(s) | 145, 281 |
| Hpy188I | TCNGA | 2 cut(s) | 125, 445 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 151, 230, 349 |
| Hpy8I | GTNNAC | 2 cut(s) | 145, 281 |
| HpyAV | CCTTC | 5 cut(s) | 62, 196, 227, 281, 451 |
| HpyCH4III | ACNGT | 2 cut(s) | 170, 307 |
| HpyCH4IV | ACGT | 2 cut(s) | 226, 283 |
| HpyCH4V | TGCA | 3 cut(s) | 79, 378, 434 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 361 |
| HpyF3I | CTNAG | 2 cut(s) | 262, 442 |
| HpySE526I | ACGT | 2 cut(s) | 226, 283 |
| Kpn2I | TCCGGA | 1 cut(s) | 348 |
| Kzo9I | GATC | 3 cut(s) | 34, 238, 345 |
| LmnI | GCTCC | 1 cut(s) | 443 |
| LpnPI | CCDG | 8 cut(s) | 27, 57, 125, 170, 341, 362, 414, 444 |
| LweI | GCATC | 3 cut(s) | 334, 342, 387 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeII | ACGT | 2 cut(s) | 226, 283 |
| MaeIII | GTNAC | 2 cut(s) | 222, 266 |
| MalI | GATC | 3 cut(s) | 36, 240, 347 |
| MboI | GATC | 3 cut(s) | 34, 238, 345 |
| MboII | GAAGA | 1 cut(s) | 458 |
| MflI | RGATCY | 1 cut(s) | 238 |
| MlyI | GAGTC | 2 cut(s) | 129, 135 |
| MmeI | TCCRAC | 1 cut(s) | 69 |
| MnlI | CCTC | 5 cut(s) | 158, 175, 253, 269, 451 |
| MroI | TCCGGA | 1 cut(s) | 348 |
| MseI | TTAA | 1 cut(s) | 27 |
| MspI | CCGG | 1 cut(s) | 349 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 361 |
| NdeII | GATC | 3 cut(s) | 34, 238, 345 |
| NmuCI | GTSAC | 2 cut(s) | 222, 266 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 280 |
| PfeI | GAWTC | 2 cut(s) | 136, 294 |
| PleI | GAGTC | 2 cut(s) | 128, 134 |
| PpsI | GAGTC | 2 cut(s) | 128, 134 |
| PspEI | GGTNACC | 1 cut(s) | 266 |
| PspFI | CCCAGC | 1 cut(s) | 355 |
| PspPI | GGNCC | 1 cut(s) | 11 |
| PsuI | RGATCY | 1 cut(s) | 238 |
| RsaI | GTAC | 1 cut(s) | 418 |
| RsaNI | GTAC | 1 cut(s) | 417 |
| SaqAI | TTAA | 1 cut(s) | 27 |
| Sau3AI | GATC | 3 cut(s) | 34, 238, 345 |
| Sau96I | GGNCC | 1 cut(s) | 11 |
| SchI | GAGTC | 2 cut(s) | 129, 135 |
| SfaNI | GCATC | 3 cut(s) | 334, 342, 387 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| SspI | AATATT | 1 cut(s) | 113 |
| SspMI | CTAG | 1 cut(s) | 230 |
| TaaI | ACNGT | 2 cut(s) | 170, 307 |
| TaiI | ACGT | 2 cut(s) | 229, 286 |
| TaqI | TCGA | 3 cut(s) | 66, 274, 422 |
| TfiI | GAWTC | 2 cut(s) | 136, 294 |
| Tru1I | TTAA | 1 cut(s) | 27 |
| Tru9I | TTAA | 1 cut(s) | 27 |
| TseFI | GTSAC | 2 cut(s) | 222, 266 |
| Tsp45I | GTSAC | 2 cut(s) | 222, 266 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 179 |
| XbaI | TCTAGA | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 230 |