Rh2AG162300

regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004207
Physical Location & Seq
Reverse (-)
15301560 .. 15322288
20729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG162300.1

Sequence Viewer

Length: 9705 bp
ATGTTTCCGAGCGGCACAATCCGGCGGAGGCTGGCCGCTCTGCTGCGGCCGTGGCTTCGGGAAGAGCCGGAACTCGAGCTCAGTTTGGGGCTGATCAGTTCGCACGCGGCGGCTAAGAACCTCCGGTTCGATACCGCGGCGCTCAATCGGCTCGGCGACGATTCGGACGGGTTTTTGTATAAGGAGGTCAGTGTCGAACAGTTGAGCGTTCGGTTCTCGAACTGGCTCGCTCCTGCATTCTCAATTGAGTTTCATGGCGTCAAGGTGGTGCTCTCGACTCGGGAGTTGAAGAAGAAGAAGAAGCTTTTTGAGGATACATTTGCAGAGGATATGAAGAAGAAGAAGCTTTCTGAGATTGATCCTCAGGGGAGTGCTGTGCATTCTTTTCTGGAAAAGCTTATGGCTACTTCTACGACTCCGAAAAATAAGTTCAAAACATCTCTTTTGAATCTGTTACTCACACACTGTCAGCTTCAAGTGCATGATATTAGTCTCCAAGTCCAGGTTCCTGTCTTAAATGATTCGTTTGTTTGTTCTTTGGATATAGAAGATATTAATGTGGATCCTCAGTATCTTGATCGTGGGTGTCTTCTTCGAGGCCTTTTTGGTACACTCTTTGTACCTTCGAAGGAGAGCTCTTTTGCTATAGTAGGCAGTGGCTGTGAGGTTGGGTTTAAGAAGGCAGGTCAGCTCAAGCGTGTCTTGTTATTGACTGAGTTGTGCAGTTGCATTAAGTTGAATGATTTTCAGCTTGTAGACATCAATCTTCGAGTCCCTGAAATACATTTTTCGTTTTCTCCGGATGATCTTTCTTTCTATTTGGCATTCACTACAGCATCATCCCAAGAATCTCATCGTGCTAGAGATGGCAGACAACTGTGGAAGCTAGCTGCGAGTAGAATTGACAATATGACTTCAGCTCATAGATGGTCGTTGCAAAAGTCAGCTGTTGTTGTTTGTTTCTGGTTACGTTATGTCAATGCTTACGAGTATTTACTGTTGCTAATTGGATATTATGACGACCACTTATTAAAAAGATCAGCTATTAGAATCTATGAGGACAAGATGCTTTTGAGTTCTGTTGAAAACCAATGGAAGGTGATTTCTGATATTGAGAAAGAGCTGCCAGCTGAAGCTATTGCACAGGCATGGAGAGTAGCCCGTAACAGAGCAGCATCAAATGTTCAATGTCCCGAATATAGTTCCAAAAAACCATTTGTGACTACAATTTACAACTTCCTTCTCATAATCCTTTCATTACTAGCTTGTGCCTGGAGATTTTTTTGCAAGATAGTCCTTTTTATTATGCACCCCTTTGTTTTTAGGAAAATATTAGTCAATGAGCCAAAGAGTGCAGATCTGGATATTGTTTCTGAAGGTCCGTGTACGCAGTTTTGCTTCAGTTTGATGCTTGGAAAAGTTCAAATCACTATCTCTCATAGAAATGAAATTCAACTCTTAGTAAATGAAAAGTTGAAATCACATCTTGGGATCACTTACTCGGATTCACTTTCATTTCATCTTTCAGTTGATGCACTGTTATTAAAATATGTAGAGGACATGTGTGAAGAGTCTTTACTGATATCATGTGGGCAATTAAAGGTCAGATCCTCATCTCTTATGGAAGCTCCTGTTAAAGAAAGCAGTTCAAAATTATCCTTTAGTTCTATGGAAGCACATTGGAAGGAGAGCAATGATAAGTGGAACAATATTCTGTGGGGTGAGCCAGCAGAAATATTTCCACTTTTAGAAACTTCTGAAACTGGTTGTGCTGATCATGTTGAAGGTTCTTGTGTCTCATTTCTGAAAGACATGTGGTTGGATTGGAGAAGTGAGTGCGATAAATTTGGAAAAAGTGAAATTCAGTACTCTGAAACTCCATTCCTTCTTTGTGAATTTAAAAATTTCTTGATATATCCAGACCTCAAAACATCAGATTCTGGTTTTTGGAAGTTCTATTTTGTTCTGGGAAAGTTGAATCTTGTGTTGGGATATTCATCAATAGTATCATTGTCTTTGCTATTTAGGCAGATACAACATACTCTATGCTGGGGAGAGGCCAATGGTCAGTCACCCGGTCTTTCACATTCTCCAAGAACCAGTGAGAGTAAACCAGAAATCAGTCTGGATAGCAAATACAAGTGCTATGCTAATAGATTAGAAATGGCATTGCTTAAAATGCTTCCAAAAAAACATGTTCAACTAGGGGTATTCATTGCTGGTCCTCACATCCTTATGTCATTGGGAAAGAATTTTGATGGTGGCAACAAAGACAAAAATCATGTATATATTCAGGACGATTTTCACGTTGCATTTGATGTGCACAATATTGAAGCTGCTGTTTGGTCAACCTCAAAGTTTGATCTTGCATCATTCGTGGGGCCCTCAGCATCTGATGATGTGGAACCAGAGTGCCTCAGGATGGACCAGCCTCTGGTGATTGATATCTCTAACTCTAATAATGGGAAGTATCAAGCTCAGGGTGGGATCTCTCTTGGTTCCTACATACGAGTTGATGGTTTAGATGTCTGCCTGGTTGCCGCAGCAGGAAAACGACAAAGCCAGATTTTGGTTTCTAAGCCAATGACTTTGCAGTTGTTATCCTCCAGGGAGTATGTTCATTCATTTAGCACAAATGTTATTGCTTTCTCTGCAGCTTTGTTTGGGAAAACTGAAGGATTCACCATTTTATCGTACATGGATGAATTTGATGTTCTCTTTCAGGTGCTTGCAAATTTATCTTCTGCAGTATCATATTCATTTAGACATTTTGCATCTGTCAGTGACTTGCCATTACAATTTGGAAAGCAACAATATTCAAATGCTGAATCTGAGAACGAGGAGACTACAGCGCATGAACCTCCCTTGAATTATAGCAGTGTCCTATTTTCAACTAATGGGACCTTCAAAATCAAGTCAATGAATATAATCGTGCACAAGTCTAGGATGGGTGATAATGTGGGGAGCTGCCTAGCAACCTCTGATGCTTCAAGTAGCAAACAGTTGTCTGAGCATGACTTGCCTGATTATGGAATTTGGATTTCAGTTCATCAAACAAGTCTTGATATGTCTTACAAAGAAGGAAAAGTGATACTTCTTTCTAATTTATCAGAAATTCAGTCTTCAAGTTTTAGATATAAGAATCGGAGAGGCAAAAGTACTGATCAGTCTGTACTTAGTGATCTGCTACTGCAATCTCTTGATTGCATATATCAACTATCACTTTCTAGTTGTGTACTTAGTTTGTCACTGTTCCTATCTCAGAACTGCTCATCTATTGGCACTGTTAACAACACACTTGATACTAATTCTGTGAGTGAAACAGAGCACACGGAAAATTTCCCATTCACTAATTCTGAAAGCTCAGGTCATCAGAACTATAGCTTTATTCAAGGGTCAGAATTGGTTTCAAATATTCGACCTCCGGGCTCAAGCCATTGGTTACTTGTAAATCTTGCACTGGGTAAGATTTATGTGGGAAGGTGCTCAGCAAAGAATGTTATGAATGAGGCGCATCAATTAAATAAGTTTTTGTCATCAGTTTCTGTTGGTGGTGAATTTCAGAGAATCAGTTGTGAAATTCAGGGTGGTTTCCTTTTCCTTGAAACAACAGCTGCGGCTACCTTATTGCGATGTTTTTCTTCATATCTTGATTGCTTCGCAAATATTTTATCTGGCTCACAATCATCCGATAAGCACGTTGAAGAAGATAAGCCCATTGAAGAAGCTGATACTGCTGTAAATATGACTAGACCAGATAGTCATTCTGATAAGGACTGTATGCAAGAGACTCCTTGTACATCTCCACAGGTCAAAGGGGGACAGATGGAAGCTTTTAGCTTAAATATATCTCGTTTTTCTTGCGCTCTTGTGATTCAGGAAGAGAATGGTGCTGTACTGGAGCTTGTGCTTGAGATTGATGCCCATTTGAACGTTGAGTTGGAAAACATGCTAAGAAAATTTATATTTAAGCTTTCTCGCATATCAATCCTTTCTCAGGTCCTTCAAGAAATTTTGGAAAATAAAACCCAAAGTTCTCAAGTTTCTTCAGTCACATCGAATACTTTTCAATCTCATGCTGCATCAGGAGTGTCTACAGGTTCTCAGCACATGGATGAGATTCATCCTGTTAATAATGCAAGTAGTTCAAGACGTCCTGGATCACAGGAAGAGCACTCTGAACATAGTTCTCTGCATGAGGTATTTCGTCTAAGTCATCACAAATATATCCTAAAGGGTCAAGAACTAGCCTCCAGTGAGTGCGAGTTAAGACAGGAAGGGGGAACTGCCTTCATATCAGTTGAGAAGCCTTTAAATGAAGTTTGGGTTGGAAGCGGAACTATTTCATGTTTTGATATTACAATATCTCTATCTCAAATACAGATGCTTTTGTCTATGATTTCATCCTTTTCTGGGGTATTTGGGGAGGAGTTGATCAGTGAACCGGATAGAAGGCACTGGTCTAATGACGAGGAATTAAAAAACAGTTTGGAGACAATGGTTCCTAATGGTGCAATAGTGGCAATTCAGGATGTCCATCAACATATGTATTTTACAGTTGAGGGTAATGAGGATAAGTACAGCTTAGCGGGTGCAGTTCATTATTCTCTTGTGGGAGAAAGCGCTCTTTTCATGGTCAAGTATAACAATCAAAAGGGATGGAATTCATCAGTTTTGTGGTTCTCCTTGATATCGTTGCATGCCAAGAATGCTTCTGGGGAGCCATTGCGCTTGAACTACCGTCGAGGATCTGATTTTGTTGACGTCTCTAGTGCGAATGATAATGCAGGGGCACTTTGGACAGCGGTTTCTTGTGAGCCTGAAAGTTATGAGGGCGACATTGACTGGGAGCCCTACAATCAATTGGTTAAAAGGACCTTTTACCTTGTAAACAAAAAGAATGACTCTGCTGTTGCTATTGTAGATGGGATTCCAGAGTTTGTTAGAAAGCCTGGAAATCCAATCAAGTTGAAAGTGTTCCACAATGCTCCTACAGCTCATGACATAAAGATGGATAACTACCCTGGAGAGGCATCTGTGGCTCGTCCGCAACAGAGTGATGAAGGGATAACTTCTGGGAAGGGTGGAAAGCTTCCTTGCATTGATGTTACATTTGACACAATTTCCTTGACCATTATCCATGAACTCGTAGATACAAAAGACATGCCTCTCCTTCGTTGTTGCATTGGCAGAACTGGACAGTCCAAACATGAACTTGAAGAGTCAAAAGACATGGCTCTCCTTGGTGGTTGCAGTGACAGAACCGAACGATCCAAACTTACTGTTCAAATTCTCCCTTCTAAAGTTAGGATTATAAGCTCCTTAACAACAGTGGTATATTACTTTGATGCACAAAGAAACAAATGGAGAGAACTTATCCACCCAGTTGAAACATGCCTTTTCTATCGTTCAAGCTTCCAAATTCAGAGTTCAGAAGCTGTTTCGCATGGAGTACCTGTTCATATCCATTGCAGAACTAAAGAGTTGAATATATCCCTATCCGAACTTTCATTGGACATACTTCTCTTTACAGTTGGGAAACTAAATTTAGCTGGTCCTTTCTCAGTGATAAGTACTAAGATTTGGGCCAATTGTTGCAAGGTGGAGAACCAGTCAGGATTAAACCTTCTTTGTCAGTGTGATGAGCAAAGTGTAAAAGTTTCCAGAAGGCAGTCTACGTCCATTATTTTAAGGTGCTCGGATTCGGAAAACCAACCTCCAGAGATGGCATCAGTCATGTCAATCCGACTTACTGGTCCTAGATCTTCTTTGATGACCTCTCCAATTCATGTCTCTCACCTAGAAGCTCAAGCATTTGCTTGGAGAACACAAATAATGTCACTTAAAGATTCACAAACTTACCCTGGACCATTTGTTATAGTTGACGTTTCAAGGAAATCCCAGGATGGTTTGTCAATTCTTATTTCTCCTCTCGTAAGAATACACAATGAAACTGGATTGTCTATAAAGCTACGATTTCGACGATCTCAGCAGAAGGAAGACGTGTTTGCTTCAGTGGTGCTTAATGCTGGTGATACATATGATGACTCCATGGCCATGTTTGATGCTATAAATTTGTCTGGTGAAGAAAAGAAGGCCCTGAGGTCTTTAAGTCTTGGCAATTTCTTGTTCTCTTTTAGACCTGAAATTCCAGATGGCTTAATGAACTCTAAGAAATCAATTTCAGCAGAATGGTCAGATGATCTTAAAGGTGGAAAGGCAGTTCGTCTCTCTGGAATCTTTGATAAATTAAGCTATAAAGTGCGGAAGGCTTTCTTTAGTGAATCTGCGAAATCTTCCTTCAGCACTGCCCATTGTACTCTTAAATCGGAAGGGGCAAATACTGTCGACATGCATTTTTTGATTCAGAGTATAAGGAGAAATGTTCCTATTGTACAACCTGATAGGTCTATGAATCTCCTTGAAAATAGCAAATCACCAGTTGCCTTACAAGAGCAAAAGGATATTTATCTTCTTCCTACAGTGTGTGTTTCCAATTTATTGCATATGGAGATACATGTCTTTGTCAGTGAATCAGATGGACGTCCTACTATTGCGTCTGACAATGATAGGAATCAATCAACCATATCTTGTGGTTCCATGGTTGAATTTTATGCCAACCCTTCGATTATTTACTTCACAATCACACTGACTGGTTATGATGCAAGCTGCAAACCAGTGAACAGCAGTGATTGGGTCAAAAAGTTACTGAAGCAGAAAAGTGATGTGCCTTCTGTGGACATTGATCTGGATTTTGGTGGGGGAAAGTATTCTGCTACCTTAAGATTGTCTCGAGGGAGCAGAGGCACATTAGAGGCTGCTATTTTCACATCATACTCCCTGAAAAATGATACAGAATTTGGCCTTTGTTTCTTTGTGTCTAATAAGAGGCCCCTTTCTAGGGATGAAGCAGAGAAGTATGGTTCTAGCATTCCTTCAGAATTTGGATTATATTTGCCTCCAAAGTCAACCAGATCATGGTTCTTAAAATCCAGCAAAGTGCGTCTCAAATTGCTAAAAGATAATGCATCGGAGATGCTTATCGACTTGGATTCTTTATCAGGACTTGCGGAGATAAGTTTGGAAACAGAGGAAGGATCTGGAATCAGATCTATTACAAAGCTTGGGGTTTCCACAGGACCACCTTTGAGTAAAGTGGTTGTGCCATCACAAATAGTAACTATGGTCCCAAGACATGTTGTAATAAATGAATCAGGAGAAAACATCATTGTTCGCCAATGTTATTTGCAGGATGACACTGTTGGCATGATCCCCGTCAACAGTAAACAGAGGGCGCCTCTACAGCTGTGGAATGTGATAGACAAGAAGAGAGATGTCAGTTTGTTTGAGCGTGTTATGAAAAAGCACAGAAAAGCTAATGATGATTCACCAATATATCTCCAGTTTCGATTGAATGAGTCTAAGTTAGGTTGGTCGGGGCCAGTATGCATTGCTTCTCTAGGAAGATTTTTCCTCAAGTTCAAAAGGCAGCAATTGGACCAAGTGACAGCACTAGAAAGCAATGTAACAGAATTCGCTTCTGTTCATCTTGTTGAAGAAGGCTCTACTCTTGGTTTACACTTCCATAAACCTCCAAATGTCAGACTCCCATACCGAATTGAGAATTGCTTGCCTGATGTGTCGATAACTTACTACCAGAAGGATTCATCAGAGCCAGAGATTGTTGCATCAGAAAGTTGCACTGATTATGTTTGGGATGATTTGACTCTTCCACATAAGTTGGTCGTCAGGATCAATGATAGTCTTCTACTACGTGAAATTAACTTGGATAAGGTGAGAGCATGGAAGCCTTTCTACAAAACCAGGCAACGGAGTGGATTGGCAACTCATTTACCATTTGGAAAAGACTCGGGGGACAAGAAGGGTGATTTTGGTGAGTTTAATGGCATGGAGATGATGAAGGTGGGGTTTGAAATATATGCAGATGGTCCAACCCGGGTCTTAAGATTTTGTGAAATTTCTAGCAGCCACAAGGGAGATAAAATGTTTCAATCATGCGAGAAGATTCAACTAAGACTTAATCAGTTTACAATTCACCTTCTTGAACATGAAAAGCAGGATGGAGAAGATATGGAGCCGCCTGGGTATACACCAATCTTAGCTGCAAGAATTGGGAATATTAACTTTGATTCTGTCTTTACATATGAGCAAAAGTTTAGCCAGATCAGTATACAGTCATTGAATTTGGAGAACAAGTGGGTGGGTGCTCCTTTTGCAGCAATGCTTCGTAGACATCAATCAGACTTCGATGATTCAAATGATTGTGTACTCAAAATTGTCATTGTCTTGCTGTCAACCAGTTCCAATGTTGTACAAGTTAAGTACTCGTCTATTGCTCTGCAGCCAATGGATTTAAATCTTGATGAGGAGACATTAATGAAAATTGTCCCATTTTGGAGAACATCTCTTAGTGAGGCGAAGAGTAGCCAGTATTATTTTGATCATTTTGAGATCCATCCGATAAAGATTATTGCAAACTTTCTTCCTGGCGAGTCATATTCAAGTTATAGCTCAACTGAGGAGACTCTAAGGTCCTTGCTGCACAGTGTAGTTAAGGTCCCTGCGATAAAAAATAAGGTTGTAGAGCTCAATGGTGTTATGGTCACTCATGCTCTTATAACGATGCGTGAATTACTTATCAAATGTGCACAACATTATTCATGGTATGCCATGAGGGCTATATATATTGCAAAGGGAAGTCCATTGCTTCCACCAGATTTTGTGTCAATTTTTGATGACTTGGCTTCTTCGTCTCTTGATGTCTTCTTTGATCCTTCTCGTGCATTAGTGACTCTTCCAGGTTTGACTTTAGGTACCTTCAAGTTAATCAGTAAATGTATCGATGGTAAAGGATTCTTGGGGACAAAACGCTATTTTGGTGACCTAGGAAAATCTTTGAGGATGGCAGGGTCAAATGTATTGTTTGCTGCAGTCACTGAAATATCAGACTCTATTCTGAAAGGAGCAGAAGCAAGTGGTTTTGATGGAGTGGTCACGGGCTTTCACCATGGAATATTGAAATTGGCTATGGAGCCATCATTATTGGGAACTGCTTTGATGGAAGGTGGCCCAGATAGAAAGATTAAGCTTGACCGCAGTCCTGCTGTTGATGAGTTATATATCGAAGGATACTTGCAAGCGATGTTGGATACGATGTATAGACAAGAATATTTGAGAGTCAGAGTCATCGAGAATCAGGTTTACCTCAAAAACCTGCCCCCCAACAGTTCCCTTATAAACGAGATTATGGATCGTGTGAAGGGGTTTCTTGTGAGCAAGTCACTTCTGAAAGGAGACCCCTCAATAACATCTCGCCCCTTGGGTCATCTTCGAGGTGAACGTGAGTGGAGAATCGGCCCAACTGTGCTGACATTAGGTGAGCATCTGTTCGTGAGTTTCGCAATCCGAATCCTGCGGAAGCAAGCTAACAAGTGCATCGCCAACATCAAGTGGAAGCCAGAGAGCGATGGTGGTCGATCGATTGTCCCTGCAAGCTCCTCGGAAGAAGTGGTGAAGGGTAAGTTCATTTGGAAATGGGGAAGTGGGATCGGCAAGTTTGTTTTGTCAGCCATAGTAGCATATATAGATGGACGGTTATGTCGTTCTATTCCTAATCCTGTAGCTCGCCGCATCGTTAGCGGCTTTCTGTTGACTTTCCTTGATAACAACAACAGCAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SHR-BD VPS13_C

Protein Analysis

3234

Amino Acids

361.64

Weight (kDa)

6.33

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_VAB PF25036 2154 - 2573 4.2e-19 Vacuolar-sorting associated protein 13, adaptor binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 5315, 8639, 9257
AasI GACNNNNNNGTC 4 cut(s) 3759, 5754, 8551, 9618
AatII GACGTC 3 cut(s) 4156, 4767, 6547
Acc36I ACCTGC 2 cut(s) 674, 9243
Acc65I GGTACC 1 cut(s) 8834
AccB1I GGYRCC 2 cut(s) 7294, 8834
AccB7I CCANNNNNTGG 3 cut(s) 2434, 2569, 6978
AccBSI CCGCTC 2 cut(s) 12, 38
AccI GTMKAC 7 cut(s) 756, 4094, 5675, 6348, 8108, 8191, 8251
AccII CGCG 2 cut(s) 107, 137
AccIII TCCGGA 1 cut(s) 799
AclI AACGTT 1 cut(s) 3933
AcoI YGGCCR 3 cut(s) 33, 47, 6054
AcyI GRCGYC 5 cut(s) 258, 4153, 4764, 6544, 7295
AfeI AGCGCT 1 cut(s) 4624
AflII CTTAAG 2 cut(s) 6781, 7963
AflIII ACRYGT 6 cut(s) 1560, 1812, 2194, 6003, 6517, 7195
AjiI CACGTC 1 cut(s) 6004
AjuI GAANNNNNNNTTGG 8 cut(s) 489, 521, 1970, 2002, 3923, 3955, 4311, 4343
AloI GAACNNNNNNTCC 4 cut(s) 5442, 5474, 6207, 6239
Alw44I GTGCAC 3 cut(s) 2321, 2933, 8667
AlwNI CAGNNNCTG 7 cut(s) 660, 1940, 2393, 2434, 3545, 5438, 8957
Ama87I CYCGRG 5 cut(s) 74, 279, 6792, 7870, 7956
Aor13HI TCCGGA 1 cut(s) 799
Aor51HI AGCGCT 1 cut(s) 4624
ApaI GGGCCC 1 cut(s) 2385
ApaLI GTGCAC 3 cut(s) 2321, 2933, 8667
AseI ATTAAT 2 cut(s) 555, 8396
Asp700I GAANNNNTTC 6 cut(s) 1737, 4342, 4976, 6272, 6769, 7811
Asp718I GGTACC 1 cut(s) 8834
AspA2I CCTAGG 1 cut(s) 8905
AspLEI GCGC 7 cut(s) 142, 2854, 3514, 3866, 4625, 4731, 7297
AsuC2I CCSGG 4 cut(s) 2076, 3426, 7957, 7958
AsuII TTCGAA 1 cut(s) 626
AsuNHI GCTAGC 1 cut(s) 886
AvaI CYCGRG 5 cut(s) 74, 279, 6792, 7870, 7956
AvrII CCTAGG 1 cut(s) 8905
AxyI CCTNAGG 3 cut(s) 363, 2417, 6101
BaeGI GKGCMC 5 cut(s) 2325, 2385, 2937, 4795, 8671
BaeI ACNNNNGTAYC 2 cut(s) 3723, 3756
BalI TGGCCA 1 cut(s) 6056
BamHI GGATCC 1 cut(s) 562
BanI GGYRCC 2 cut(s) 7294, 8834
BanII GRGCYC 6 cut(s) 81, 638, 2385, 3431, 4854, 8610
BarI GAAGNNNNNNTAC 6 cut(s) 1560, 1592, 5659, 5691, 7799, 7831
BauI CACGAG 1 cut(s) 8799
BbsI GAAGAC 5 cut(s) 581, 3114, 6006, 7757, 8776
BbvCI CCTCAGC 1 cut(s) 2386
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 9501, 9535
BciVI GTATCC 3 cut(s) 307, 9143, 9163
BclI TGATCA 5 cut(s) 93, 1774, 3163, 4434, 8461
BcnI CCSGG 4 cut(s) 2076, 3426, 7957, 7958
BfoI RGCGCY 3 cut(s) 143, 4626, 7298
BfrI CTTAAG 2 cut(s) 6781, 7963
BfuAI ACCTGC 2 cut(s) 674, 9243
BfuI GTATCC 3 cut(s) 307, 9143, 9163
BglI GCCNNNNNGGC 1 cut(s) 8696
BglII AGATCT 3 cut(s) 1357, 5762, 7109
BlnI CCTAGG 1 cut(s) 8905
BlpI GCTNAGC 2 cut(s) 3487, 4585
BmcAI AGTACT 4 cut(s) 1868, 3160, 5575, 8345
BmeT110I CYCGRG 5 cut(s) 74, 279, 6792, 7870, 7956
BmgBI CACGTC 1 cut(s) 6004
BmrI ACTGGG 3 cut(s) 3470, 4855, 5378
BmtI GCTAGC 1 cut(s) 890
BmuI ACTGGG 3 cut(s) 3470, 4855, 5378
BoxI GACNNNNGTC 1 cut(s) 9117
BpiI GAAGAC 5 cut(s) 581, 3114, 6006, 7757, 8776
BplI GAGNNNNNCTC 4 cut(s) 7282, 7314, 8410, 8442
BpmI CTGGAG 7 cut(s) 1294, 2590, 3920, 4237, 5046, 5703, 7385
Bpu10I CCTNAGC 3 cut(s) 2386, 2478, 3364
Bpu1102I GCTNAGC 2 cut(s) 3487, 4585
Bpu14I TTCGAA 1 cut(s) 626
BpuEI CTTGAG 6 cut(s) 677, 3415, 3932, 4023, 5793, 7460
BpuMI CCSGG 4 cut(s) 2076, 3426, 7957, 7958
Bsa29I ATCGAT 2 cut(s) 8862, 9500
BsaAI YACGTR 1 cut(s) 7775
BsaBI GATNNNNATC 8 cut(s) 1612, 1996, 2444, 4536, 6468, 6573, 7040, 8376
BsaHI GRCGYC 5 cut(s) 258, 4153, 4764, 6544, 7295
BsaI GGTCTC 1 cut(s) 9309
BsaWI WCCGGW 3 cut(s) 123, 799, 4444
BsaXI ACNNNNNCTCC 6 cut(s) 5442, 5472, 5597, 5627, 8201, 8231
Bse21I CCTNAGG 3 cut(s) 363, 2417, 6101
Bse8I GATNNNNATC 8 cut(s) 1612, 1996, 2444, 4536, 6468, 6573, 7040, 8376
BseAI TCCGGA 1 cut(s) 799
BseCI ATCGAT 2 cut(s) 8862, 9500
BseJI GATNNNNATC 8 cut(s) 1612, 1996, 2444, 4536, 6468, 6573, 7040, 8376
BseRI GAGGAG 6 cut(s) 2855, 4442, 5919, 8402, 8555, 9508
BseSI GKGCMC 5 cut(s) 2325, 2385, 2937, 4795, 8671
BseX3I CGGCCG 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 2049
BsgI GTGCAG 4 cut(s) 742, 1374, 4614, 8546
Bsh1236I CGCG 2 cut(s) 107, 137
Bsh1285I CGRYCG 2 cut(s) 50, 9500
BshNI GGYRCC 2 cut(s) 7294, 8834
BshVI ATCGAT 2 cut(s) 8862, 9500
BsiEI CGRYCG 2 cut(s) 50, 9500
BsiHKCI CYCGRG 5 cut(s) 74, 279, 6792, 7870, 7956
BsiSI CCGG 8 cut(s) 22, 68, 124, 800, 2076, 3425, 4445, 7957
BsmBI CGTCTC 4 cut(s) 4771, 6233, 7010, 8778
BsmI GAATGC 5 cut(s) 236, 379, 824, 4714, 6930
Bso31I GGTCTC 1 cut(s) 9309
BsoBI CYCGRG 5 cut(s) 74, 279, 6792, 7870, 7956
Bsp119I TTCGAA 1 cut(s) 626
Bsp120I GGGCCC 1 cut(s) 2381
Bsp13I TCCGGA 1 cut(s) 799
Bsp1407I TGTACA 3 cut(s) 3797, 6394, 8332
Bsp1720I GCTNAGC 2 cut(s) 3487, 4585
Bsp19I CCATGG 3 cut(s) 6051, 6600, 9028
BspDI ATCGAT 2 cut(s) 8862, 9500
BspEI TCCGGA 1 cut(s) 799
BspFNI CGCG 2 cut(s) 107, 137
BspHI TCATGA 1 cut(s) 4999
BspMAI CTGCAG 4 cut(s) 2656, 2749, 8364, 8953
BspMI ACCTGC 2 cut(s) 674, 9243
BspOI GCTAGC 1 cut(s) 890
BspQI GCTCTTC 2 cut(s) 57, 4164
BspT104I TTCGAA 1 cut(s) 626
BspT107I GGYRCC 2 cut(s) 7294, 8834
BspTI CTTAAG 2 cut(s) 6781, 7963
BspTNI GGTCTC 1 cut(s) 9309
BsrBI CCGCTC 2 cut(s) 12, 38
BsrGI TGTACA 3 cut(s) 3797, 6394, 8332
BssNAI GTATAC 2 cut(s) 8109, 8192
BssNI GRCGYC 5 cut(s) 258, 4153, 4764, 6544, 7295
BssSI CACGAG 1 cut(s) 8799
BssT1I CCWWGG 6 cut(s) 5242, 6051, 6600, 8905, 9028, 9339
Bst1107I GTATAC 2 cut(s) 8109, 8192
Bst2BI CACGAG 1 cut(s) 8799
Bst6I CTCTTC 9 cut(s) 57, 1563, 3876, 4164, 5214, 7322, 7734, 8435, 8820
BstACI GRCGYC 5 cut(s) 258, 4153, 4764, 6544, 7295
BstAFI CTTAAG 2 cut(s) 6781, 7963
BstAPI GCANNNNNTGC 1 cut(s) 3019
BstAUI TGTACA 3 cut(s) 3797, 6394, 8332
BstBAI YACGTR 1 cut(s) 7775
BstBI TTCGAA 1 cut(s) 626
BstDSI CCRYGG 5 cut(s) 50, 135, 6051, 6600, 9028
BstEII GGTNACC 1 cut(s) 8900
BstENI CCTNNNNNAGG 1 cut(s) 3995
BstFNI CGCG 2 cut(s) 107, 137
BstH2I RGCGCY 3 cut(s) 143, 4626, 7298
BstHHI GCGC 7 cut(s) 142, 2854, 3514, 3866, 4625, 4731, 7297
BstMCI CGRYCG 2 cut(s) 50, 9500
BstPAI GACNNNNGTC 1 cut(s) 9117
BstPI GGTNACC 1 cut(s) 8900
BstSLI GKGCMC 5 cut(s) 2325, 2385, 2937, 4795, 8671
BstUI CGCG 2 cut(s) 107, 137
BstV2I GAAGAC 5 cut(s) 581, 3114, 6006, 7757, 8776
BstX2I RGATCY 9 cut(s) 562, 1357, 1607, 2487, 4748, 5762, 7097, 7109, 8472
BstYI RGATCY 9 cut(s) 562, 1357, 1607, 2487, 4748, 5762, 7097, 7109, 8472
BstZ17I GTATAC 2 cut(s) 8109, 8192
BstZI CGGCCG 1 cut(s) 47
Bsu15I ATCGAT 2 cut(s) 8862, 9500
Bsu36I CCTNAGG 3 cut(s) 363, 2417, 6101
BsuI GTATCC 3 cut(s) 307, 9143, 9163
BsuTUI ATCGAT 2 cut(s) 8862, 9500
BtgI CCRYGG 5 cut(s) 50, 135, 6051, 6600, 9028
BtgZI GCGATG 4 cut(s) 3646, 9176, 9442, 9501
BtrI CACGTC 1 cut(s) 6004
BtsI GCAGTG 5 cut(s) 661, 2884, 5260, 6306, 6694
BveI ACCTGC 2 cut(s) 674, 9243
CaiI CAGNNNCTG 7 cut(s) 660, 1940, 2393, 2434, 3545, 5438, 8957
CciI TCATGA 1 cut(s) 4999
CfoI GCGC 7 cut(s) 142, 2854, 3514, 3866, 4625, 4731, 7297
Cfr42I CCGCGG 1 cut(s) 138
Cfr9I CCCGGG 1 cut(s) 7956
ClaI ATCGAT 2 cut(s) 8862, 9500
CseI GACGC 3 cut(s) 247, 6546, 6992
CspCI CAANNNNNGTGG 2 cut(s) 7722, 7757
DinI GGCGCC 1 cut(s) 7296
DraI TTTAAA 3 cut(s) 1900, 4314, 8376
DrdI GACNNNNNNGTC 4 cut(s) 3759, 5754, 8551, 9618
DseDI GACNNNNNNGTC 4 cut(s) 3759, 5754, 8551, 9618
EaeI YGGCCR 3 cut(s) 33, 47, 6054
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 9 cut(s) 57, 1563, 3876, 4164, 5214, 7322, 7734, 8435, 8820
EarI CTCTTC 9 cut(s) 57, 1563, 3876, 4164, 5214, 7322, 7734, 8435, 8820
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 3 cut(s) 79, 636, 8608
EclXI CGGCCG 1 cut(s) 47
Eco130I CCWWGG 6 cut(s) 5242, 6051, 6600, 8905, 9028, 9339
Eco147I AGGCCT 1 cut(s) 600
Eco24I GRGCYC 6 cut(s) 81, 638, 2385, 3431, 4854, 8610
Eco31I GGTCTC 1 cut(s) 9309
Eco32I GATATC 3 cut(s) 1584, 2446, 4692
Eco47III AGCGCT 1 cut(s) 4624
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 3 cut(s) 79, 636, 8608
Eco81I CCTNAGG 3 cut(s) 363, 2417, 6101
Eco88I CYCGRG 5 cut(s) 74, 279, 6792, 7870, 7956
Eco91I GGTNACC 1 cut(s) 8900
EcoICRI GAGCTC 3 cut(s) 79, 636, 8608
EcoNI CCTNNNNNAGG 1 cut(s) 3995
EcoO109I RGGNCCY 9 cut(s) 2381, 2382, 2901, 4000, 4875, 6097, 6891, 8553, 8578
EcoO65I GGTNACC 1 cut(s) 8900
EcoRI GAATTC 2 cut(s) 4663, 7532
EcoRV GATATC 3 cut(s) 1584, 2446, 4692
EcoT14I CCWWGG 6 cut(s) 5242, 6051, 6600, 8905, 9028, 9339
EcoT22I ATGCAT 3 cut(s) 6357, 7030, 7451
EcoT38I GRGCYC 6 cut(s) 81, 638, 2385, 3431, 4854, 8610
EgeI GGCGCC 1 cut(s) 7296
EheI GGCGCC 1 cut(s) 7296
ErhI CCWWGG 6 cut(s) 5242, 6051, 6600, 8905, 9028, 9339
Esp3I CGTCTC 4 cut(s) 4771, 6233, 7010, 8778
FalI AAGNNNNNCTT 8 cut(s) 686, 718, 3078, 3110, 4568, 4600, 6260, 6292
FauI CCCGC 1 cut(s) 4582
FauNDI CATATG 4 cut(s) 4545, 6040, 6507, 8164
FbaI TGATCA 5 cut(s) 93, 1774, 3163, 4434, 8461
FblI GTMKAC 7 cut(s) 756, 4094, 5675, 6348, 8108, 8191, 8251
FriOI GRGCYC 6 cut(s) 81, 638, 2385, 3431, 4854, 8610
GlaI GCGC 7 cut(s) 141, 2853, 3513, 3865, 4624, 4730, 7296
GsaI CCCAGC 1 cut(s) 2053
GsuI CTGGAG 7 cut(s) 1294, 2590, 3920, 4237, 5046, 5703, 7385
HaeII RGCGCY 3 cut(s) 143, 4626, 7298
HapII CCGG 8 cut(s) 22, 68, 124, 800, 2076, 3425, 4445, 7957
HgaI GACGC 3 cut(s) 247, 6546, 6992
HhaI GCGC 7 cut(s) 142, 2854, 3514, 3866, 4625, 4731, 7297
Hin1I GRCGYC 5 cut(s) 258, 4153, 4764, 6544, 7295
Hin6I GCGC 7 cut(s) 140, 2852, 3512, 3864, 4623, 4729, 7295
HinP1I GCGC 7 cut(s) 140, 2852, 3512, 3864, 4623, 4729, 7295
HincII GTYRAC 9 cut(s) 2349, 3289, 4762, 5884, 6349, 6969, 7279, 8316, 9672
HindII GTYRAC 9 cut(s) 2349, 3289, 4762, 5884, 6349, 6969, 7279, 8316, 9672
HindIII AAGCTT 9 cut(s) 302, 344, 395, 3831, 3971, 5090, 5413, 7121, 9107
HpaI GTTAAC 1 cut(s) 3289
HpaII CCGG 8 cut(s) 22, 68, 124, 800, 2076, 3425, 4445, 7957
Hpy99I CGWCG 3 cut(s) 161, 4746, 5985
Hsp92I GRCGYC 5 cut(s) 258, 4153, 4764, 6544, 7295
HspAI GCGC 7 cut(s) 140, 2852, 3512, 3864, 4623, 4729, 7295
KasI GGCGCC 1 cut(s) 7294
Kpn2I TCCGGA 1 cut(s) 799
KpnI GGTACC 1 cut(s) 8838
Ksp22I TGATCA 5 cut(s) 93, 1774, 3163, 4434, 8461
KspAI GTTAAC 1 cut(s) 3289
KspI CCGCGG 1 cut(s) 138
LguI GCTCTTC 2 cut(s) 57, 4164
MbiI CCGCTC 2 cut(s) 12, 38
MfeI CAATTG 4 cut(s) 243, 4862, 5590, 7493
MflI RGATCY 9 cut(s) 562, 1357, 1607, 2487, 4748, 5762, 7097, 7109, 8472
MlsI TGGCCA 1 cut(s) 6056
MluNI TGGCCA 1 cut(s) 6056
Mly113I GGCGCC 1 cut(s) 7295
MmeI TCCRAC 6 cut(s) 1800, 3921, 4309, 5770, 7976, 9147
Mox20I TGGCCA 1 cut(s) 6056
Mph1103I ATGCAT 3 cut(s) 6357, 7030, 7451
MroI TCCGGA 1 cut(s) 799
MroXI GAANNNNTTC 6 cut(s) 1737, 4342, 4976, 6272, 6769, 7811
MscI TGGCCA 1 cut(s) 6056
MslI CAYNNNNRTG 7 cut(s) 1147, 1443, 2234, 4113, 5009, 6056, 7913
Msp20I TGGCCA 1 cut(s) 6056
MspA1I CMGCKG 6 cut(s) 137, 947, 1130, 3614, 4805, 7306
MspCI CTTAAG 2 cut(s) 6781, 7963
MspI CCGG 8 cut(s) 22, 68, 124, 800, 2076, 3425, 4445, 7957
MunI CAATTG 4 cut(s) 243, 4862, 5590, 7493
Mva1269I GAATGC 5 cut(s) 236, 379, 824, 4714, 6930
MvnI CGCG 2 cut(s) 107, 137
NarI GGCGCC 1 cut(s) 7295
NciI CCSGG 4 cut(s) 2076, 3426, 7957, 7958
NcoI CCATGG 3 cut(s) 6051, 6600, 9028
NdeI CATATG 4 cut(s) 4545, 6040, 6507, 8164
NheI GCTAGC 1 cut(s) 886
NmeAIII GCCGAG 1 cut(s) 132
NsiI ATGCAT 3 cut(s) 6357, 7030, 7451
NspV TTCGAA 1 cut(s) 626
PaeI GCATGC 1 cut(s) 4703
PaeR7I CTCGAG 2 cut(s) 74, 6792
PagI TCATGA 1 cut(s) 4999
PceI AGGCCT 1 cut(s) 600
PciI ACATGT 5 cut(s) 1560, 1812, 2194, 6517, 7195
PciSI GCTCTTC 2 cut(s) 57, 4164
PcsI WCGNNNNNNNCGW 4 cut(s) 2304, 5980, 9358, 9619
PctI GAATGC 5 cut(s) 236, 379, 824, 4714, 6930
PdmI GAANNNNTTC 6 cut(s) 1737, 4342, 4976, 6272, 6769, 7811
PflMI CCANNNNNTGG 3 cut(s) 2434, 2569, 6978
PfoI TCCNGGA 1 cut(s) 4156
Ple19I CGATCG 1 cut(s) 9500
PluTI GGCGCC 1 cut(s) 7298
Ppu21I YACGTR 1 cut(s) 7775
PpuMI RGGWCCY 5 cut(s) 2901, 4000, 4875, 8553, 8578
PscI ACATGT 5 cut(s) 1560, 1812, 2194, 6517, 7195
PshAI GACNNNNGTC 1 cut(s) 9117
PshBI ATTAAT 2 cut(s) 555, 8396
PsiI TTATAA 3 cut(s) 5315, 8639, 9257
Psp124BI GAGCTC 3 cut(s) 81, 638, 8610
Psp1406I AACGTT 1 cut(s) 3933
Psp5II RGGWCCY 5 cut(s) 2901, 4000, 4875, 8553, 8578
PspEI GGTNACC 1 cut(s) 8900
PspFI CCCAGC 1 cut(s) 2049
PspOMI GGGCCC 1 cut(s) 2381
PspPPI RGGWCCY 5 cut(s) 2901, 4000, 4875, 8553, 8578
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 4 cut(s) 2656, 2749, 8364, 8953
PstNI CAGNNNCTG 7 cut(s) 660, 1940, 2393, 2434, 3545, 5438, 8957
PsuI RGATCY 9 cut(s) 562, 1357, 1607, 2487, 4748, 5762, 7097, 7109, 8472
PvuI CGATCG 1 cut(s) 9500
PvuII CAGCTG 4 cut(s) 947, 1130, 3614, 7306
RseI CAYNNNNRTG 7 cut(s) 1147, 1443, 2234, 4113, 5009, 6056, 7913
SacI GAGCTC 3 cut(s) 81, 638, 8610
SacII CCGCGG 1 cut(s) 138
SalI GTCGAC 1 cut(s) 6347
SapI GCTCTTC 2 cut(s) 57, 4164
ScaI AGTACT 4 cut(s) 1868, 3160, 5575, 8345
SfoI GGCGCC 1 cut(s) 7296
Sfr274I CTCGAG 2 cut(s) 74, 6792
Sfr303I CCGCGG 1 cut(s) 138
SfuI TTCGAA 1 cut(s) 626
SgrBI CCGCGG 1 cut(s) 138
SlaI CTCGAG 2 cut(s) 74, 6792
SmaI CCCGGG 1 cut(s) 7958
SmiI ATTTAAAT 1 cut(s) 8376
SmiMI CAYNNNNRTG 7 cut(s) 1147, 1443, 2234, 4113, 5009, 6056, 7913
SphI GCATGC 1 cut(s) 4703
SseBI AGGCCT 1 cut(s) 600
SspDI GGCGCC 1 cut(s) 7294
SstI GAGCTC 3 cut(s) 81, 638, 8610
StuI AGGCCT 1 cut(s) 600
StyI CCWWGG 6 cut(s) 5242, 6051, 6600, 8905, 9028, 9339
SwaI ATTTAAAT 1 cut(s) 8376
TspGWI ACGGA 3 cut(s) 1371, 3347, 7846
TspMI CCCGGG 1 cut(s) 7956
Van91I CCANNNNNTGG 3 cut(s) 2434, 2569, 6978
Vha464I CTTAAG 2 cut(s) 6781, 7963
VneI GTGCAC 3 cut(s) 2321, 2933, 8667
VspI ATTAAT 2 cut(s) 555, 8396
XagI CCTNNNNNAGG 1 cut(s) 3995
XhoI CTCGAG 2 cut(s) 74, 6792
XmaI CCCGGG 1 cut(s) 7956
XmaJI CCTAGG 1 cut(s) 8905
XmiI GTMKAC 7 cut(s) 756, 4094, 5675, 6348, 8108, 8191, 8251
XmnI GAANNNNTTC 6 cut(s) 1737, 4342, 4976, 6272, 6769, 7811
ZraI GACGTC 3 cut(s) 4154, 4765, 6545
ZrmI AGTACT 4 cut(s) 1868, 3160, 5575, 8345
Zsp2I ATGCAT 3 cut(s) 6357, 7030, 7451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.