Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009049

Physical Location & Seq

Genomic Coordinates Forward (+)

12997317 .. 13000828

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGCACCACCGCGCCGGTTTCAACCTCTCTCGCCTGATCCAATCCCCGCCGTCCGATCCCGACTCCCTCCTCTTCCTCCCTGGCGGGTTGTTCCTCCACCCTGATGAGACTTTTTCTCCTAACTTTCTTGCGGTGGTTCCATCGAAGACACGTTCGGGGAGGTGTTTCAGTAAAACGGTGCGTTTTGGGGGCCGGCGTGGAGGGCTGTTCTTGTCGGTGAGCTTGTCGGATGGGAACGAGGGGTATGTTAGGGAATCGGGAGATGATCTGGGGCAGAATGGGAATAAAGGTTCGGCGGAGGAAGAGACGGTTGTGTTTGAGAAGGAGAAGGGATCAGGTGCTATGAATACCACCAAGCATCTTTGGTCTGGAGCTGTTGCTGCTATGGTTTCAAGGACGTTTGTGGCTCCTCTTGAGAGGCTAAAGCTGGAGTACATAGTACGTGGGGAACAGAAGAACTTGTTTGAGCTGATCAAGACGATTGCAGAGTCTCAAGGGCTGAGAGGATTTTGGAAAGGGAATTTTGTCAATATTCTTCGCACAGCACCCTTTAAGGCTATCAATTTCTACGCATATGATACGTACAGAAACCATCTGGTGAAGTTATCGGGGAATGAGGAATCCACGAATTTTGAGAGGTTTCTTGCTGGTGCTGCGGCTGGAATTACAGCTACCTTGCTCTGCTTGCCCATGGACACTATCAGGACGAAGATGGTAGCTCCTGGTGGAGAAGCATTGGGTGGTGTAATTGGTGTTTTCCGCCACATGGTCCAGACTGAAGGATTCTTTTCTCTTTACAAGGGCTTACTACCCTCCATTGTCAGTATGGCACCTTCAGGTGCAGTTTTCTATGGCGTCTATGATATACTAAAATCAGCTTATCTGCATTCACCTGAAGGGAGGGAAAGACTCCGACACATGAAACAAGAAGGTGACAAACTGAATGCTCTGGAACAAATGGAGTTGGGTACCATTAGAACATTACTATATGGGGCAATTGCCGGTTGTTGCTCTGAAGCTGCTACATATCCTTTTGAAGTTGTGAGGAGACAGCTCCAAATGCAAGTTCGGGCAAATAAGTTAAGTGCAGTTGCAACTTGTGCGAAGATTGTTGAGCAAGGAGGTGTTCCTGCTCTTTATGCCGGATTGATACCCAGCTTGTTACAGGTCTTACCATCTGCTGCCATCAGTTATTTTGTGTATGAGTTCATGAAGATTCTTCTCAAAGTTGAGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

414

Amino Acids

45.22

Weight (kDa)

9.03

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	115 - 201	4.7e-20	Mitochondrial carrier protein
Mito_carr	PF00153	208 - 295	2.1e-20	Mitochondrial carrier protein
Mito_carr	PF00153	323 - 409	9.9e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64970 AT5G64970 AT5G64970
fragaria_vesca	FvH4_1g20840
malus_domestica	MD01G1030900.v1.1 MD15G1318200.v1.1
prunus_persica	Prupe.6G187500_v2.0.a1
pyrus_communis	pycom01g05840 pycom15g28540
rosa_chinensis	RchiOBHm_Chr2g0113451
rosa_laevigata	RLG00000018064
rosa_multiflora	Rmu_sc0007415.1_g000018 Rmu_sc0020459.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129230 Rroxscaffold_2G00129930
rosa_rugosa	Rorug02G0187600
rosa_samantha	Rh2AG242100 Rh2BG256000 Rh2CG246300 Rh2DG250000
rosa_wichuraiana	Rw0G018830 Rw2G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	968
AccB1I	GGYRCC	2 cut(s)	829, 968
AccII	CGCG	1 cut(s)	12
AciI	CCGC	7 cut(s)	10, 47, 84, 131, 296, 656, 760
AclWI	GGATC	3 cut(s)	31, 50, 340
AcsI	RAATTY	2 cut(s)	520, 628
AcuI	CTGAAG	4 cut(s)	798, 819, 915, 1035
AcyI	GRCGYC	1 cut(s)	855
AfaI	GTAC	4 cut(s)	434, 441, 584, 970
AfiI	CCNNNNNNNGG	1 cut(s)	766
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	22, 393, 1037
AjnI	CCWGG	2 cut(s)	79, 721
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
AloI	GAACNNNNNNTCC	2 cut(s)	274, 306
Alw26I	GTCTC	4 cut(s)	101, 299, 495, 1042
AlwI	GGATC	3 cut(s)	31, 50, 340
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	380, 653, 1019, 1181
ApoI	RAATTY	2 cut(s)	520, 628
Asp718I	GGTACC	1 cut(s)	968
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	190, 769
AsuHPI	GGTGA	4 cut(s)	229, 610, 882, 944
AvaII	GGWCC	1 cut(s)	769
BanI	GGYRCC	2 cut(s)	829, 968
BarI	GAAGNNNNNNTAC	2 cut(s)	817, 849
BbsI	GAAGAC	2 cut(s)	152, 1227
BbvI	GCAGC	4 cut(s)	367, 640, 1006, 1168
BccI	CCATC	6 cut(s)	148, 224, 600, 706, 1183, 1193
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	81, 723
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	4 cut(s)	101, 299, 495, 1042
BisI	GCNGC	5 cut(s)	381, 654, 657, 1020, 1182
BlsI	GCNGC	5 cut(s)	382, 655, 658, 1021, 1183
Bme1390I	CCNGG	2 cut(s)	81, 723
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	2 cut(s)	190, 769
BmiI	GGNNCC	5 cut(s)	138, 191, 408, 831, 970
BmrFI	CCNGG	2 cut(s)	81, 723
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	152, 1227
BpmI	CTGGAG	2 cut(s)	390, 449
BpuEI	CTTGAG	2 cut(s)	434, 477
BsaAI	YACGTR	2 cut(s)	443, 582
BsaHI	GRCGYC	1 cut(s)	855
BsaJI	CCNNGG	2 cut(s)	79, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse118I	RCCGGY	3 cut(s)	14, 192, 1001
BseBI	CCWGG	2 cut(s)	81, 723
BseDI	CCNNGG	2 cut(s)	79, 690
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMII	CTCAG	1 cut(s)	491
BseRI	GAGGAG	3 cut(s)	59, 399, 1060
BseXI	GCAGC	4 cut(s)	367, 640, 1006, 1168
BseYI	CCCAGC	1 cut(s)	1154
BsgI	GTGCAG	2 cut(s)	861, 1107
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	2 cut(s)	829, 968
BsiSI	CCGG	4 cut(s)	15, 193, 1002, 1143
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	4 cut(s)	101, 299, 495, 1042
BsmBI	CGTCTC	1 cut(s)	299
BsmI	GAATGC	2 cut(s)	886, 949
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	36, 55, 265, 332, 471
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	7 cut(s)	10, 47, 84, 131, 296, 656, 760
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	1209
BspLI	GGNNCC	5 cut(s)	138, 191, 408, 831, 970
BspPI	GGATC	3 cut(s)	31, 50, 340
BspT107I	GGYRCC	2 cut(s)	829, 968
BsrFI	RCCGGY	3 cut(s)	14, 192, 1001
BssAI	RCCGGY	3 cut(s)	14, 192, 1001
BssECI	CCNNGG	2 cut(s)	79, 690
BssMI	GATC	5 cut(s)	36, 55, 265, 332, 471
BssNI	GRCGYC	1 cut(s)	855
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	2 cut(s)	81, 723
Bst4CI	ACNGT	2 cut(s)	178, 310
Bst6I	CTCTTC	2 cut(s)	77, 297
BstACI	GRCGYC	1 cut(s)	855
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstBAI	YACGTR	2 cut(s)	443, 582
BstC8I	GCNNGC	2 cut(s)	194, 686
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	5 cut(s)	39, 58, 268, 335, 474
BstMAI	GTCTC	4 cut(s)	101, 299, 495, 1042
BstMBI	GATC	5 cut(s)	36, 55, 265, 332, 471
BstMWI	GCNNNNNNNGC	7 cut(s)	202, 380, 653, 685, 1060, 1100, 1139
BstNI	CCWGG	2 cut(s)	81, 723
BstSCI	CCNGG	2 cut(s)	79, 721
BstSNI	TACGTA	1 cut(s)	582
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	4 cut(s)	367, 640, 1006, 1168
BstV2I	GAAGAC	2 cut(s)	152, 1227
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	194, 686
CciI	TCATGA	1 cut(s)	1209
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	3 cut(s)	14, 192, 1001
Cfr13I	GGNCC	2 cut(s)	190, 769
CseI	GACGC	1 cut(s)	844
Csp6I	GTAC	4 cut(s)	433, 440, 583, 969
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	4 cut(s)	691, 766, 919, 1210
CviQI	GTAC	4 cut(s)	433, 440, 583, 969
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	5 cut(s)	38, 57, 267, 334, 473
DpnII	GATC	5 cut(s)	36, 55, 265, 332, 471
Eam1104I	CTCTTC	2 cut(s)	77, 297
EarI	CTCTTC	2 cut(s)	77, 297
EciI	GGCGGA	2 cut(s)	311, 749
Eco105I	TACGTA	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	4 cut(s)	798, 819, 915, 1035
EcoRII	CCWGG	2 cut(s)	79, 721
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	4 cut(s)	694, 769, 922, 1213
FatI	CATG	4 cut(s)	690, 765, 918, 1209
FauI	CCCGC	2 cut(s)	54, 77
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	5 cut(s)	381, 654, 657, 1020, 1182
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	5 cut(s)	381, 654, 657, 1020, 1182
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	5 cut(s)	381, 654, 657, 1020, 1182
GsaI	CCCAGC	1 cut(s)	1158
GsuI	CTGGAG	2 cut(s)	390, 449
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	4 cut(s)	15, 193, 1002, 1143
HgaI	GACGC	1 cut(s)	844
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	855
Hin1II	CATG	4 cut(s)	694, 769, 922, 1213
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	8 cut(s)	62, 254, 488, 620, 783, 909, 1216, 1232
HpaII	CCGG	4 cut(s)	15, 193, 1002, 1143
HphI	GGTGA	4 cut(s)	229, 610, 882, 944
Hpy188I	TCNGA	4 cut(s)	55, 229, 914, 1015
Hpy188III	TCNNGA	9 cut(s)	59, 258, 369, 413, 475, 703, 772, 950, 1210
HpyAV	CCTTC	6 cut(s)	316, 322, 773, 843, 890, 923
HpyCH4III	ACNGT	2 cut(s)	178, 310
HpyCH4IV	ACGT	4 cut(s)	151, 398, 442, 581
HpyCH4V	TGCA	7 cut(s)	4, 485, 842, 886, 1063, 1088, 1094
HpyF10VI	GCNNNNNNNGC	7 cut(s)	202, 380, 653, 685, 1060, 1100, 1139
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	4 cut(s)	151, 398, 442, 581
Hsp92I	GRCGYC	1 cut(s)	855
Hsp92II	CATG	4 cut(s)	694, 769, 922, 1213
HspAI	GCGC	1 cut(s)	12
KpnI	GGTACC	1 cut(s)	972
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	5 cut(s)	36, 55, 265, 332, 471
LmnI	GCTCC	4 cut(s)	371, 412, 724, 1059
Lsp1109I	GCAGC	4 cut(s)	367, 640, 1006, 1168
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	4 cut(s)	151, 398, 442, 581
MaeIII	GTNAC	2 cut(s)	932, 1161
MalI	GATC	5 cut(s)	38, 57, 267, 334, 473
MboI	GATC	5 cut(s)	36, 55, 265, 332, 471
MfeI	CAATTG	1 cut(s)	996
MluCI	AATT	6 cut(s)	520, 562, 628, 663, 747, 996
MlyI	GAGTC	4 cut(s)	56, 497, 903, 1241
MmeI	TCCRAC	2 cut(s)	207, 937
MroNI	GCCGGC	1 cut(s)	192
MseI	TTAA	2 cut(s)	552, 1082
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	4 cut(s)	15, 193, 1002, 1143
MspR9I	CCNGG	2 cut(s)	81, 723
MunI	CAATTG	1 cut(s)	996
Mva1269I	GAATGC	2 cut(s)	886, 949
MvaI	CCWGG	2 cut(s)	81, 723
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	7 cut(s)	202, 380, 653, 685, 1060, 1100, 1139
NaeI	GCCGGC	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	5 cut(s)	36, 55, 265, 332, 471
NgoMIV	GCCGGC	1 cut(s)	192
NlaIII	CATG	4 cut(s)	694, 769, 922, 1213
NlaIV	GGNNCC	5 cut(s)	138, 191, 408, 831, 970
NmuCI	GTSAC	1 cut(s)	932
PagI	TCATGA	1 cut(s)	1209
PctI	GAATGC	2 cut(s)	886, 949
PdiI	GCCGGC	1 cut(s)	194
PfeI	GAWTC	4 cut(s)	254, 620, 783, 1216
PkrI	GCNGC	5 cut(s)	382, 655, 658, 1021, 1183
PleI	GAGTC	4 cut(s)	56, 496, 903, 1240
PpsI	GAGTC	4 cut(s)	56, 496, 903, 1240
Ppu21I	YACGTR	2 cut(s)	443, 582
Psp6I	CCWGG	2 cut(s)	79, 721
PspFI	CCCAGC	1 cut(s)	1154
PspGI	CCWGG	2 cut(s)	79, 721
PspN4I	GGNNCC	5 cut(s)	138, 191, 408, 831, 970
PspPI	GGNCC	2 cut(s)	190, 769
RsaI	GTAC	4 cut(s)	434, 441, 584, 970
RsaNI	GTAC	4 cut(s)	433, 440, 583, 969
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	552, 1082
SatI	GCNGC	5 cut(s)	381, 654, 657, 1020, 1182
Sau3AI	GATC	5 cut(s)	36, 55, 265, 332, 471
Sau96I	GGNCC	2 cut(s)	190, 769
SchI	GAGTC	4 cut(s)	56, 497, 903, 1241
ScrFI	CCNGG	2 cut(s)	81, 723
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	769
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	413, 492
SmoI	CTYRAG	2 cut(s)	413, 492
SnaBI	TACGTA	1 cut(s)	582
Sse9I	AATT	6 cut(s)	520, 562, 628, 663, 747, 996
SsiI	CCGC	7 cut(s)	10, 47, 84, 131, 296, 656, 760
SspI	AATATT	1 cut(s)	532
StyD4I	CCNGG	2 cut(s)	79, 721
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	2 cut(s)	178, 310
TaiI	ACGT	4 cut(s)	154, 401, 445, 584
TaqI	TCGA	1 cut(s)	143
TasI	AATT	6 cut(s)	520, 562, 628, 663, 747, 996
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	4 cut(s)	254, 620, 783, 1216
Tru1I	TTAA	2 cut(s)	552, 1082
Tru9I	TTAA	2 cut(s)	552, 1082
TseFI	GTSAC	1 cut(s)	932
TseI	GCWGC	4 cut(s)	380, 653, 1019, 1181
Tsp45I	GTSAC	1 cut(s)	932
TspDTI	ATGAA	5 cut(s)	359, 935, 1198, 1226, 1227
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	2 cut(s)	520, 628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.