Rw2G018890

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
24836932 .. 24840089
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018890.1

Sequence Viewer

Length: 1293 bp
ATGCACCACCGCGCCGGTTTCAACCTCTCTCGCTTGATCCAATCCCCGCCGTCCGATCCCGACTCCTCGCTCCTCTTCCTCGGCGGCGGCGGCTTGTTCCTCCACCCTGATCAAACCGTCTCTCCCACCTTCCTTTCCCTCCTTCCGGCCAAGTCCAGGACCCGGTCGGGTTCGGGTCGGTGTTTCAGCAAAACGGTGCGTTTTGGGGGTGGCCGCGGCGGAGGGGCGTTCTTGTGTGTGAGCTTGTCGGATGGAAACGAGGGGTATGTTCGGGAATCGGGAGAAGTCCTGGGGCAAAATGGGAATAAAAATTCGACGGCGGAAGAGCAGGCGGCGGAGGAGGTTGTGTTTGAGAAGGAGCGGAGTGAGATTGTGGAGAAGGGATCAGGTGCTATGAATACTACCAAGCATCTCTGGTCTGGAGCTGTTGCTGCCATGGTTTCAAGAACGTTTGTTGCTCCTCTCGAGAGGCTAAAGCTGGAGTACATAATACGTGGTGAGCAGAAGAACTTGGTTGAGCTCATCAAGACGATTGCAGATTCTCAAGGGCTGAAAGGATTTTGGAAAGGGAATTTTGTGAATATTCTTCGCACGGCACCCTTCAAGGCTATCAATTTCTATGCCTATGATACGTACAGAAATCATCTGGTGAAGTTGTCGGGGAATGAGGAATCCACGAATTTTGAGAGGTTTCTTGCTGGTGCTGCAGCTGGAATTACAGCTACCTTGCTCTGCTTGCCCATGGACACTATCCGGACAAAGATGGTAGCTCCTGGTGGAGAAGCATTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATTCAAACCGAAGGATTCTTCTCTCTTTACAAGGGCTTACTACCCTCCATTGTCAGTATGGCACCTTCAGGTGCAGTTTTCTACGGCGTCTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGAGGGAGAGACTCCGACACATGAAACAAGAAGGTGGCAAACTGAATGCTCTGGAACAAATGGAGTTGGGTACCATTAGAACATTACTGTATGGAGCAATTGCCGGTTGTTGCTCTGAAGCCGCTACATATCCTTTTGAAGTTGTGAGGAGACACCTTCAATTGCAAGTTCCGGCAACAAGATTAAGTGCAGTTGCAACTTGTGCGAAGATTGTTGAGCAAGGAGGCGTTCCTGCTCTTTATGCTGGATTGATACCCAGCTTGTTGCAGGTCTTACCATCTGCTGCCATCAGTTATTTTGTGTACGAGTTCATGAAGATTCTTCTAAAAGTAGAGTCTTCATAG

Protein Analysis

430

Amino Acids

46.58

Weight (kDa)

8.98

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 132 - 218 2.3e-19 Mitochondrial carrier protein
Mito_carr PF00153 225 - 312 2.1e-20 Mitochondrial carrier protein
Mito_carr PF00153 340 - 426 1.2e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1207
Acc65I GGTACC 1 cut(s) 1019
AccB1I GGYRCC 3 cut(s) 595, 880, 1019
AccBSI CCGCTC 1 cut(s) 361
AccII CGCG 2 cut(s) 12, 216
AccIII TCCGGA 1 cut(s) 753
AclI AACGTT 1 cut(s) 449
AclWI GGATC 3 cut(s) 31, 50, 391
AcoI YGGCCR 2 cut(s) 147, 211
AcsI RAATTY 3 cut(s) 310, 571, 679
AcuI CTGAAG 3 cut(s) 870, 966, 1086
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 4 cut(s) 485, 635, 1021, 1253
AfiI CCNNNNNNNGG 3 cut(s) 145, 156, 162
AgsI TTSAA 6 cut(s) 22, 444, 604, 824, 1088, 1109
AjnI CCWGG 3 cut(s) 155, 288, 772
AluBI AGCT 9 cut(s) 243, 425, 478, 520, 710, 722, 770, 929, 1209
AluI AGCT 9 cut(s) 243, 425, 478, 520, 710, 722, 770, 929, 1209
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 3 cut(s) 124, 952, 1093
AlwI GGATC 3 cut(s) 31, 50, 391
Ama87I CYCGRG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 753
AoxI GGCC 2 cut(s) 147, 211
ApeKI GCWGC 4 cut(s) 431, 704, 707, 1232
ApoI RAATTY 3 cut(s) 310, 571, 679
Asp718I GGTACC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 3 cut(s) 509, 661, 933
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 159
BanI GGYRCC 3 cut(s) 595, 880, 1019
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 868, 900
BbsI GAAGAC 1 cut(s) 1278
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 4 cut(s) 418, 691, 719, 1219
BccI CCATC 4 cut(s) 245, 757, 1234, 1244
BceAI ACGGC 4 cut(s) 34, 333, 609, 919
BciT130I CCWGG 3 cut(s) 157, 290, 774
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 124, 952, 1093
BfmI CTRYAG 1 cut(s) 705
BfuAI ACCTGC 1 cut(s) 1207
Bme1390I CCNGG 4 cut(s) 157, 163, 290, 774
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 4 cut(s) 161, 597, 882, 1021
BmrFI CCNGG 4 cut(s) 157, 163, 290, 774
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 1278
BpmI CTGGAG 2 cut(s) 441, 500
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 163
BsaAI YACGTR 2 cut(s) 494, 633
BsaHI GRCGYC 1 cut(s) 906
BsaJI CCNNGG 5 cut(s) 79, 214, 289, 435, 741
BsaWI WCCGGW 1 cut(s) 753
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 156, 162
Bse118I RCCGGY 2 cut(s) 14, 1052
BseAI TCCGGA 1 cut(s) 753
BseBI CCWGG 3 cut(s) 157, 290, 774
BseDI CCNNGG 5 cut(s) 79, 214, 289, 435, 741
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 3 cut(s) 145, 156, 162
BseRI GAGGAG 5 cut(s) 55, 62, 353, 450, 1111
BseXI GCAGC 4 cut(s) 418, 691, 719, 1219
BseYI CCCAGC 1 cut(s) 1205
BsgI GTGCAG 2 cut(s) 912, 1158
Bsh1236I CGCG 2 cut(s) 12, 216
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 2 cut(s) 149, 213
BshNI GGYRCC 3 cut(s) 595, 880, 1019
BsiEI CGRYCG 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 6 cut(s) 15, 146, 163, 754, 1053, 1121
BslI CCNNNNNNNGG 3 cut(s) 145, 156, 162
BsmAI GTCTC 3 cut(s) 124, 952, 1093
BsmBI CGTCTC 1 cut(s) 124
BsmI GAATGC 2 cut(s) 937, 1000
BsnI GGCC 2 cut(s) 149, 213
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 522
Bsp13I TCCGGA 1 cut(s) 753
Bsp143I GATC 4 cut(s) 36, 55, 109, 383
Bsp19I CCATGG 2 cut(s) 435, 741
BspANI GGCC 2 cut(s) 149, 213
BspEI TCCGGA 1 cut(s) 753
BspFNI CGCG 2 cut(s) 12, 216
BspHI TCATGA 1 cut(s) 1260
BspLI GGNNCC 4 cut(s) 161, 597, 882, 1021
BspMAI CTGCAG 1 cut(s) 709
BspMI ACCTGC 1 cut(s) 1207
BspPI GGATC 3 cut(s) 31, 50, 391
BspQI GCTCTTC 1 cut(s) 318
BspT107I GGYRCC 3 cut(s) 595, 880, 1019
BsrBI CCGCTC 1 cut(s) 361
BsrFI RCCGGY 2 cut(s) 14, 1052
BssAI RCCGGY 2 cut(s) 14, 1052
BssECI CCNNGG 5 cut(s) 79, 214, 289, 435, 741
BssMI GATC 4 cut(s) 36, 55, 109, 383
BssNI GRCGYC 1 cut(s) 906
BssT1I CCWWGG 2 cut(s) 435, 741
Bst2UI CCWGG 3 cut(s) 157, 290, 774
Bst4CI ACNGT 3 cut(s) 118, 196, 1038
Bst6I CTCTTC 2 cut(s) 80, 318
BstACI GRCGYC 1 cut(s) 906
BstAPI GCANNNNNTGC 1 cut(s) 1151
BstBAI YACGTR 2 cut(s) 494, 633
BstC8I GCNNGC 2 cut(s) 330, 737
BstDSI CCRYGG 3 cut(s) 214, 435, 741
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 2 cut(s) 12, 216
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 4 cut(s) 39, 58, 112, 386
BstMAI GTCTC 3 cut(s) 124, 952, 1093
BstMBI GATC 4 cut(s) 36, 55, 109, 383
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 6 cut(s) 90, 431, 704, 736, 1151, 1190
BstNI CCWGG 3 cut(s) 157, 290, 774
BstSCI CCNGG 4 cut(s) 155, 161, 288, 772
BstSFI CTRYAG 1 cut(s) 705
BstSNI TACGTA 1 cut(s) 633
BstUI CGCG 2 cut(s) 12, 216
BstV1I GCAGC 4 cut(s) 418, 691, 719, 1219
BstV2I GAAGAC 1 cut(s) 1278
BsuRI GGCC 2 cut(s) 149, 213
BtgI CCRYGG 3 cut(s) 214, 435, 741
BtsCI GGATG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 1207
Cac8I GCNNGC 2 cut(s) 330, 737
CciI TCATGA 1 cut(s) 1260
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 2 cut(s) 14, 1052
Cfr13I GGNCC 1 cut(s) 159
Cfr42I CCGCGG 1 cut(s) 217
CseI GACGC 1 cut(s) 895
Csp6I GTAC 4 cut(s) 484, 634, 1020, 1252
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 5 cut(s) 436, 742, 817, 970, 1261
CviQI GTAC 4 cut(s) 484, 634, 1020, 1252
DpnI GATC 4 cut(s) 38, 57, 111, 385
DpnII GATC 4 cut(s) 36, 55, 109, 383
EaeI YGGCCR 2 cut(s) 147, 211
Eam1104I CTCTTC 2 cut(s) 80, 318
EarI CTCTTC 2 cut(s) 80, 318
EciI GGCGGA 4 cut(s) 234, 335, 350, 800
Ecl136II GAGCTC 1 cut(s) 520
Eco105I TACGTA 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 435, 741
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 3 cut(s) 870, 966, 1086
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 3 cut(s) 155, 288, 772
EcoT14I CCWWGG 2 cut(s) 435, 741
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 435, 741
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 5 cut(s) 439, 745, 820, 973, 1264
FatI CATG 5 cut(s) 435, 741, 816, 969, 1260
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 109
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 522
GlaI GCGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 1209
GsuI CTGGAG 2 cut(s) 441, 500
HaeIII GGCC 2 cut(s) 149, 213
HapII CCGG 6 cut(s) 15, 146, 163, 754, 1053, 1121
HgaI GACGC 1 cut(s) 895
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 5 cut(s) 439, 745, 820, 973, 1264
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 9 cut(s) 62, 275, 539, 671, 820, 834, 960, 1267, 1283
HpaII CCGG 6 cut(s) 15, 146, 163, 754, 1053, 1121
HphI GGTGA 3 cut(s) 509, 661, 933
Hpy166II GTNNAC 1 cut(s) 1252
Hpy188I TCNGA 4 cut(s) 55, 250, 965, 1066
Hpy8I GTNNAC 1 cut(s) 1252
Hpy99I CGWCG 1 cut(s) 319
HpyCH4III ACNGT 3 cut(s) 118, 196, 1038
HpyCH4IV ACGT 3 cut(s) 449, 493, 632
HpyCH4V TGCA 9 cut(s) 4, 536, 707, 893, 937, 1114, 1139, 1145, 1216
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 431, 704, 736, 1151, 1190
HpySE526I ACGT 3 cut(s) 449, 493, 632
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 5 cut(s) 439, 745, 820, 973, 1264
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 753
KpnI GGTACC 1 cut(s) 1023
Ksp22I TGATCA 1 cut(s) 109
KspI CCGCGG 1 cut(s) 217
Kzo9I GATC 4 cut(s) 36, 55, 109, 383
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 6 cut(s) 75, 358, 422, 463, 775, 1043
Lsp1109I GCAGC 4 cut(s) 418, 691, 719, 1219
LweI GCATC 1 cut(s) 418
MaeII ACGT 3 cut(s) 449, 493, 632
MalI GATC 4 cut(s) 38, 57, 111, 385
MbiI CCGCTC 1 cut(s) 361
MboI GATC 4 cut(s) 36, 55, 109, 383
MboII GAAGA 9 cut(s) 67, 335, 517, 578, 829, 1168, 1262, 1276, 1278
MfeI CAATTG 2 cut(s) 1047, 1109
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 8 cut(s) 310, 571, 613, 679, 714, 798, 1047, 1109
MlyI GAGTC 3 cut(s) 56, 954, 1292
MmeI TCCRAC 2 cut(s) 228, 988
MroI TCCGGA 1 cut(s) 753
MseI TTAA 1 cut(s) 1133
MspA1I CMGCKG 2 cut(s) 216, 710
MspI CCGG 6 cut(s) 15, 146, 163, 754, 1053, 1121
MspR9I CCNGG 4 cut(s) 157, 163, 290, 774
MunI CAATTG 2 cut(s) 1047, 1109
Mva1269I GAATGC 2 cut(s) 937, 1000
MvaI CCWGG 3 cut(s) 157, 290, 774
MvnI CGCG 2 cut(s) 12, 216
MwoI GCNNNNNNNGC 6 cut(s) 90, 431, 704, 736, 1151, 1190
NciI CCSGG 1 cut(s) 163
NcoI CCATGG 2 cut(s) 435, 741
NdeII GATC 4 cut(s) 36, 55, 109, 383
NlaIII CATG 5 cut(s) 439, 745, 820, 973, 1264
NlaIV GGNNCC 4 cut(s) 161, 597, 882, 1021
NmeAIII GCCGAG 1 cut(s) 60
PaeR7I CTCGAG 1 cut(s) 464
PagI TCATGA 1 cut(s) 1260
PciSI GCTCTTC 1 cut(s) 318
PctI GAATGC 2 cut(s) 937, 1000
PfeI GAWTC 6 cut(s) 275, 539, 671, 820, 834, 1267
PflFI GACNNNGTC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 155
PleI GAGTC 3 cut(s) 56, 954, 1291
PpsI GAGTC 3 cut(s) 56, 954, 1291
Ppu21I YACGTR 2 cut(s) 494, 633
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 522
Psp1406I AACGTT 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 3 cut(s) 155, 288, 772
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 3 cut(s) 155, 288, 772
PspN4I GGNNCC 4 cut(s) 161, 597, 882, 1021
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PstI CTGCAG 1 cut(s) 709
PsyI GACNNNGTC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 4 cut(s) 485, 635, 1021, 1253
RsaNI GTAC 4 cut(s) 484, 634, 1020, 1252
SacI GAGCTC 1 cut(s) 522
SacII CCGCGG 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 1133
Sau3AI GATC 4 cut(s) 36, 55, 109, 383
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 3 cut(s) 56, 954, 1292
ScrFI CCNGG 4 cut(s) 157, 163, 290, 774
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 705
Sfr274I CTCGAG 1 cut(s) 464
Sfr303I CCGCGG 1 cut(s) 217
SgrBI CCGCGG 1 cut(s) 217
SinI GGWCC 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 464, 543
SmoI CTYRAG 2 cut(s) 464, 543
SnaBI TACGTA 1 cut(s) 633
Sse9I AATT 8 cut(s) 310, 571, 613, 679, 714, 798, 1047, 1109
SspI AATATT 1 cut(s) 583
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 4 cut(s) 155, 161, 288, 772
StyI CCWWGG 2 cut(s) 435, 741
TaaI ACNGT 3 cut(s) 118, 196, 1038
TaiI ACGT 3 cut(s) 452, 496, 635
TaqI TCGA 2 cut(s) 314, 465
TasI AATT 8 cut(s) 310, 571, 613, 679, 714, 798, 1047, 1109
TatI WGTACW 1 cut(s) 483
TauI GCSGC 7 cut(s) 87, 90, 93, 216, 219, 335, 1073
TfiI GAWTC 6 cut(s) 275, 539, 671, 820, 834, 1267
Tru1I TTAA 1 cut(s) 1133
Tru9I TTAA 1 cut(s) 1133
TseI GCWGC 4 cut(s) 431, 704, 707, 1232
TspDTI ATGAA 5 cut(s) 410, 986, 1249, 1277, 1278
Tth111I GACNNNGTC 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 3 cut(s) 310, 571, 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 874
XhoI CTCGAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.