Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009049

Physical Location & Seq

Genomic Coordinates Forward (+)

19596559 .. 19600615

Gene Structure 4057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G187500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGTCCCCAGAAATGCACCCACTGGACTTCAGCCTCACCCATCTCATTAAATCCCAGCCCTCCGATCCCGATCCCGATCCCGGTCCCCTCTTCCTCGGTGGTCTGTTCCTCCAACCGAATGACACCGTCCCTCCTTCCTTCCTCTCCTTGGTTCCCCCCAAGACCCGTTTCAGTTTCACGCGCCGTGGCAAAACGGTGCGTCTTAGAGGTTTGAGAGGAGGAGGTGGCGGTGCTCTGTTCTTTTCTGTGAGCTTGTCGATAAAGCGGAGTGAAGGGAATGGTGACGATGGATGTGTTGGGGAATCTGGGCAAGTCTTGGGGCAAAATGGGAATACAAGTATTTCGTCGGAGGAGGCCGTCGTGGTGTTCGAGAAGGGTGAGAGTGAGACTGTACGAAAGGGATCAGGTGCTATGAACACAACAAAGCATCTCTGGTCTGGAGCTGTTGCTGCTATGGTTTCCAGGACGTTTGTTGCTCCTCTTGAAAGGCTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGAACCTTTTTGAGCTCATCAGGACGATTGCAGCTTCTCAAGGGCTGAAAGGATTTTGGAAAGGAAACTTGGTCAATATTCTTCGCACAGCACCCTTTAAGGCTATCAATTTCTATGCTTATGATACTTACAGAAATCATCTGATGAAATTGTCTGAGAATGAGGAATCCACAAATTATGAGAGGTTTCTTGCTGGTGCTGCCGCTGGAATTACCGCTACCTTGCTCTGCTTACCTATGGACACTATCAGGACAAAGATGGTAGCACCTGGTGGAGAAGCCTTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATCCAAACTGAAGGGTTCTTTTCTCTTTACAAGGGTTTACTACCCTCTATTGTGAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTTTATGATATACTAAAATCGGCTTATCTGCACTCACCTGAAGGGAGGAAAAGAATCCAACACATGAAACAAGAAGGTGAGAAACTGAATGCTTTGGAACAACTGGAGTTAGGTCCCATTAGAACATTACTGTATGGGGCAATTGCCGGAGCTTGTTCTGAAGCTGCTACATATCCTTTTGAAGTTGTGAGGAGACACCTTCAATTGCAAGTTCGAGCAACTAAGTTAAGTGCATTTGCAACTTGTGTGAAAATTGTTGAGCAAGGAGGTGTACCTGCTCTTTATGCAGGGCTAACACCAAGCCTATTGCAGGTTTTACCATCAGCTGCAATCAGTTATCTTGTATACGAGTTCATGAAGATTTTTCTCAAAGTAGAGTCCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

437

Amino Acids

47.39

Weight (kDa)

9.16

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64970 AT5G64970 AT5G64970
fragaria_vesca	FvH4_1g20840
malus_domestica	MD01G1030900.v1.1 MD15G1318200.v1.1
prunus_persica	Prupe.6G187500_v2.0.a1
pyrus_communis	pycom01g05840 pycom15g28540
rosa_chinensis	RchiOBHm_Chr2g0113451
rosa_laevigata	RLG00000018064
rosa_multiflora	Rmu_sc0007415.1_g000018 Rmu_sc0020459.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129230 Rroxscaffold_2G00129930
rosa_rugosa	Rorug02G0187600
rosa_samantha	Rh2AG242100 Rh2BG256000 Rh2CG246300 Rh2DG250000
rosa_wichuraiana	Rw0G018830 Rw2G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1207, 1225
AccB1I	GGYRCC	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	1269
AccII	CGCG	1 cut(s)	181
AciI	CCGC	5 cut(s)	228, 265, 726, 738, 829
AclWI	GGATC	5 cut(s)	59, 65, 71, 409, 832
AcuI	CTGAAG	5 cut(s)	13, 867, 888, 984, 1104
AdeI	CACNNNGTG	1 cut(s)	794
AfaI	GTAC	2 cut(s)	393, 1197
AfiI	CCNNNNNNNGG	3 cut(s)	80, 148, 1234
AgsI	TTSAA	3 cut(s)	485, 1106, 1127
AjnI	CCWGG	2 cut(s)	461, 790
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 575, 607
AluBI	AGCT	8 cut(s)	252, 443, 496, 538, 557, 1076, 1088, 1250
AluI	AGCT	8 cut(s)	252, 443, 496, 538, 557, 1076, 1088, 1250
Alw21I	GWGCWC	2 cut(s)	235, 540
Alw26I	GTCTC	2 cut(s)	380, 1111
AlwI	GGATC	5 cut(s)	59, 65, 71, 409, 832
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	5 cut(s)	449, 554, 722, 1088, 1250
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	83, 1037
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	6 cut(s)	28, 293, 389, 527, 951, 1013
AvaII	GGWCC	2 cut(s)	83, 1037
BanI	GGYRCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	235, 540
BbvI	GCAGC	5 cut(s)	436, 566, 709, 1075, 1237
BccI	CCATC	4 cut(s)	48, 281, 775, 1252
BceAI	ACGGC	2 cut(s)	168, 341
BciT130I	CCWGG	2 cut(s)	463, 792
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	380, 1111
BfuAI	ACCTGC	2 cut(s)	1207, 1225
BisI	GCNGC	6 cut(s)	450, 555, 723, 726, 1089, 1251
BlsI	GCNGC	6 cut(s)	451, 556, 724, 727, 1090, 1252
Bme1390I	CCNGG	3 cut(s)	81, 463, 792
Bme18I	GGWCC	2 cut(s)	83, 1037
BmgT120I	GGNCC	2 cut(s)	83, 1037
BmiI	GGNNCC	4 cut(s)	85, 153, 900, 1039
BmrFI	CCNGG	3 cut(s)	81, 463, 792
BmsI	GCATC	1 cut(s)	436
BpmI	CTGGAG	2 cut(s)	459, 1049
BpuEI	CTTGAG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	1308
BsaBI	GATNNNNATC	2 cut(s)	69, 75
BsaJI	CCNNGG	4 cut(s)	94, 147, 184, 804
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 148, 1234
Bse1I	ACTGG	2 cut(s)	27, 1032
Bse8I	GATNNNNATC	2 cut(s)	69, 75
BseBI	CCWGG	2 cut(s)	463, 792
BseDI	CCNNGG	4 cut(s)	94, 147, 184, 804
BseGI	GGATG	1 cut(s)	296
BseJI	GATNNNNATC	2 cut(s)	69, 75
BseLI	CCNNNNNNNGG	3 cut(s)	80, 148, 1234
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	2 cut(s)	27, 1032
BseRI	GAGGAG	5 cut(s)	231, 234, 365, 468, 1129
BseXI	GCAGC	5 cut(s)	436, 566, 709, 1075, 1237
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	2 cut(s)	930, 938
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	898
BsiHKAI	GWGCWC	2 cut(s)	235, 540
BsiSI	CCGG	2 cut(s)	81, 1071
BslFI	GGGAC	3 cut(s)	69, 113, 1023
BslI	CCNNNNNNNGG	3 cut(s)	80, 148, 1234
BsmAI	GTCTC	2 cut(s)	380, 1111
BsmFI	GGGAC	3 cut(s)	69, 113, 1023
BsmI	GAATGC	1 cut(s)	1018
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	235, 540
Bsp143I	GATC	5 cut(s)	64, 70, 76, 401, 837
BspACI	CCGC	5 cut(s)	228, 265, 726, 738, 829
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	670
BspFNI	CGCG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	1278
BspLI	GGNNCC	4 cut(s)	85, 153, 900, 1039
BspMI	ACCTGC	2 cut(s)	1207, 1225
BspPI	GGATC	5 cut(s)	59, 65, 71, 409, 832
BspT107I	GGYRCC	1 cut(s)	898
BsrI	ACTGG	2 cut(s)	27, 1032
BssECI	CCNNGG	4 cut(s)	94, 147, 184, 804
BssMI	GATC	5 cut(s)	64, 70, 76, 401, 837
BssNAI	GTATAC	1 cut(s)	1270
BssT1I	CCWWGG	2 cut(s)	147, 804
Bst1107I	GTATAC	1 cut(s)	1270
Bst2UI	CCWGG	2 cut(s)	463, 792
Bst4CI	ACNGT	4 cut(s)	127, 196, 391, 1056
Bst6I	CTCTTC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	1308
BstDEI	CTNAG	3 cut(s)	203, 678, 1146
BstDSI	CCRYGG	1 cut(s)	184
BstENI	CCTNNNNNAGG	1 cut(s)	1232
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	5 cut(s)	67, 73, 79, 404, 840
BstMAI	GTCTC	2 cut(s)	380, 1111
BstMBI	GATC	5 cut(s)	64, 70, 76, 401, 837
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 722, 1208
BstNI	CCWGG	2 cut(s)	463, 792
BstSCI	CCNGG	3 cut(s)	79, 461, 790
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	5 cut(s)	436, 566, 709, 1075, 1237
BstZ17I	GTATAC	1 cut(s)	1270
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	2 cut(s)	1207, 1225
CciI	TCATGA	1 cut(s)	1278
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	83, 1037
CseI	GACGC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	392, 1196
CviAII	CATG	4 cut(s)	835, 895, 988, 1279
CviQI	GTAC	2 cut(s)	392, 1196
DdeI	CTNAG	3 cut(s)	203, 678, 1146
DpnI	GATC	5 cut(s)	66, 72, 78, 403, 839
DpnII	GATC	5 cut(s)	64, 70, 76, 401, 837
DraIII	CACNNNGTG	1 cut(s)	794
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	818
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	147, 804
Eco24I	GRGCYC	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	83, 1037
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	5 cut(s)	13, 867, 888, 984, 1104
EcoICRI	GAGCTC	1 cut(s)	538
EcoNI	CCTNNNNNAGG	1 cut(s)	1232
EcoO109I	RGGNCCY	1 cut(s)	1037
EcoRII	CCWGG	2 cut(s)	461, 790
EcoT14I	CCWWGG	2 cut(s)	147, 804
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	2 cut(s)	147, 804
FaeI	CATG	4 cut(s)	838, 898, 991, 1282
FaqI	GGGAC	3 cut(s)	69, 113, 1023
FatI	CATG	4 cut(s)	834, 894, 987, 1278
FblI	GTMKAC	1 cut(s)	1269
Fnu4HI	GCNGC	6 cut(s)	450, 555, 723, 726, 1089, 1251
FokI	GGATG	1 cut(s)	303
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	6 cut(s)	450, 555, 723, 726, 1089, 1251
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	6 cut(s)	450, 555, 723, 726, 1089, 1251
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	2 cut(s)	459, 1049
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	2 cut(s)	81, 1071
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	838, 898, 991, 1282
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	302, 689, 978, 1301
HpaII	CCGG	2 cut(s)	81, 1071
HphI	GGTGA	6 cut(s)	28, 293, 389, 527, 951, 1013
Hpy166II	GTNNAC	5 cut(s)	518, 875, 1196, 1270, 1305
Hpy188I	TCNGA	5 cut(s)	64, 349, 666, 679, 1084
Hpy188III	TCNNGA	8 cut(s)	68, 74, 370, 438, 482, 544, 772, 1279
Hpy8I	GTNNAC	5 cut(s)	518, 875, 1196, 1270, 1305
Hpy99I	CGWCG	2 cut(s)	349, 362
HpyAV	CCTTC	9 cut(s)	144, 148, 266, 367, 842, 912, 959, 992, 1133
HpyCH4III	ACNGT	4 cut(s)	127, 196, 391, 1056
HpyCH4IV	ACGT	2 cut(s)	467, 1307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 722, 1208
HpyF3I	CTNAG	3 cut(s)	203, 678, 1146
HpySE526I	ACGT	2 cut(s)	467, 1307
Hsp92II	CATG	4 cut(s)	838, 898, 991, 1282
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	64, 70, 76, 401, 837
LmnI	GCTCC	3 cut(s)	440, 481, 1073
Lsp1109I	GCAGC	5 cut(s)	436, 566, 709, 1075, 1237
LweI	GCATC	1 cut(s)	436
MabI	ACCWGGT	1 cut(s)	790
MaeII	ACGT	2 cut(s)	467, 1307
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	5 cut(s)	66, 72, 78, 403, 839
MboI	GATC	5 cut(s)	64, 70, 76, 401, 837
MboII	GAAGA	4 cut(s)	82, 535, 596, 1294
MfeI	CAATTG	2 cut(s)	1065, 1127
MhlI	GDGCHC	2 cut(s)	235, 540
MluCI	AATT	8 cut(s)	631, 671, 697, 732, 816, 1065, 1127, 1176
MlyI	GAGTC	1 cut(s)	1310
MmeI	TCCRAC	3 cut(s)	136, 327, 1006
MseI	TTAA	3 cut(s)	48, 621, 1151
MspA1I	CMGCKG	2 cut(s)	728, 1250
MspI	CCGG	2 cut(s)	81, 1071
MspR9I	CCNGG	3 cut(s)	81, 463, 792
MunI	CAATTG	2 cut(s)	1065, 1127
Mva1269I	GAATGC	1 cut(s)	1018
MvaI	CCWGG	2 cut(s)	463, 792
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	449, 722, 1208
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	5 cut(s)	64, 70, 76, 401, 837
NlaIII	CATG	4 cut(s)	838, 898, 991, 1282
NlaIV	GGNNCC	4 cut(s)	85, 153, 900, 1039
NmuCI	GTSAC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	1278
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	1018
PfeI	GAWTC	3 cut(s)	302, 689, 978
PflFI	GACNNNGTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	461
PkrI	GCNGC	6 cut(s)	451, 556, 724, 727, 1090, 1252
PleI	GAGTC	1 cut(s)	1309
PpsI	GAGTC	1 cut(s)	1309
Ppu21I	YACGTR	1 cut(s)	1308
PpuMI	RGGWCCY	1 cut(s)	1037
Psp124BI	GAGCTC	1 cut(s)	540
Psp5II	RGGWCCY	1 cut(s)	1037
Psp6I	CCWGG	2 cut(s)	461, 790
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	461, 790
PspN4I	GGNNCC	4 cut(s)	85, 153, 900, 1039
PspPI	GGNCC	2 cut(s)	83, 1037
PspPPI	RGGWCCY	1 cut(s)	1037
PsyI	GACNNNGTC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	1250
RsaI	GTAC	2 cut(s)	393, 1197
RsaNI	GTAC	2 cut(s)	392, 1196
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	48, 621, 1151
SatI	GCNGC	6 cut(s)	450, 555, 723, 726, 1089, 1251
Sau3AI	GATC	5 cut(s)	64, 70, 76, 401, 837
Sau96I	GGNCC	2 cut(s)	83, 1037
SchI	GAGTC	1 cut(s)	1310
ScrFI	CCNGG	3 cut(s)	81, 463, 792
SduI	GDGCHC	2 cut(s)	235, 540
SexAI	ACCWGGT	1 cut(s)	790
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	2 cut(s)	83, 1037
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	8 cut(s)	631, 671, 697, 732, 816, 1065, 1127, 1176
SsiI	CCGC	5 cut(s)	228, 265, 726, 738, 829
SspI	AATATT	1 cut(s)	601
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	3 cut(s)	79, 461, 790
StyI	CCWWGG	2 cut(s)	147, 804
TaaI	ACNGT	4 cut(s)	127, 196, 391, 1056
TaiI	ACGT	2 cut(s)	470, 1310
TaqI	TCGA	3 cut(s)	257, 369, 1138
TasI	AATT	8 cut(s)	631, 671, 697, 732, 816, 1065, 1127, 1176
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	3 cut(s)	302, 689, 978
Tru1I	TTAA	3 cut(s)	48, 621, 1151
Tru9I	TTAA	3 cut(s)	48, 621, 1151
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	5 cut(s)	449, 554, 722, 1088, 1250
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	5 cut(s)	428, 683, 1004, 1267, 1295
TspRI	CASTG	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	83, 1037
XagI	CCTNNNNNAGG	1 cut(s)	1232
XmiI	GTMKAC	1 cut(s)	1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.