Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009049

Physical Location & Seq

Genomic Coordinates Forward (+)

25010665 .. 25013529

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGCACCACCGCGCCGGTTTCAACCTCTCTCGCTTGATCCGATCCCCGCCGTCCGATCCCGACCCCTCGCTCCTCTTCCTCGGCGGCGGCTTGTTCCTCCACCCTGATCAAACCGTCTCTCCTACCTTCCTTTCCCTCCTTCCGGCCAACTCCAAGACCCGTTCGGGTTCGGGTCGGTGTTTCAGCAAAACGGTGCGTTTTGGGGGTGGCCGCGGCGGAGGGGCGTTCTTGTGTGTGAGCTTGTCAGATGGAAACGAGGGGTATGTTCGGGAATCGGGAGAAGTCTTGGGGCAAAATGGGAATAAAAATTCGACGGCGGAAGAGCAGGCGGCGGAGGTTGTGTTTGAGAAGGAGCGGAGTGAGATTGTGGAGAAGGGATCAGGTGTTATGAATACTACCAAGCATCTCTGGTCTGGAGCTATTGCGGCCATGGTTTCAAGAACGTTTGTTGCTCCTCTTGAGAGGCTAAAGCTCGAGTACATAGTACGTGGTGAGCAGAAGAACTTGTTTGAGCTCATCAAGACGATTGCGGATTCTCAAGGGCTGAAAGGATTTTGGAAAGGGAATTTTGTGAATATTCTTCGCACGGCACCCTTTAAGGCTATCAATTTCTATGCCTATGATACGTACAGAAACCATCTGGTGAAGTTGTCGGGGAATGAGGAATCCACGAATTTTGAGAGGTTTCTTGCTGGTGCTGCAGCTGGAATTACAGCTACCTTGCTCTGCTTGCCCATGGACACTATCCGGACAAAGATGGTAGCTCCTGGTGGAGAAGCATTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATTCAAACCGAAGGATTCTTCTCTCTTTACAAGGGCTTACTACCCTCTATTGTCAGTATGGCACCTTCAGGTGCAGTTTTCTACGGCGTCTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGAGGGAGAGACTCCGACACATGAAACAAGAAGGTGACAAACTGAATGCTCTGGAACAAATGGAGTTGGGTACCATTAGAACATTACTGTATGGGGCAATTGCCGGTTGTTGCTCTGAAGCCGCTACATACCCTTTTGAAGTTGTGAGGAGACACCTTCAAATGCAAGTTCCGGCAACCAGATTAAGTGCAGTTGCAACTTGTGCGAAGATTGTTGAGCAAGGAGGTGTTCCTGCTCTTTATGCTGGATTGATACCCAGCTTGTTGCAGGTCTTACCATCTGCTGCCATCAGTTATTTTGTGTACGAGTTTATGAAGATTCTTCTCAAAGTAGAGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

429

Amino Acids

46.54

Weight (kDa)

8.98

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	131 - 216	7.9e-20	Mitochondrial carrier protein
Mito_carr	PF00153	223 - 310	2.1e-20	Mitochondrial carrier protein
Mito_carr	PF00153	338 - 424	6.4e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64970 AT5G64970 AT5G64970
fragaria_vesca	FvH4_1g20840
malus_domestica	MD01G1030900.v1.1 MD15G1318200.v1.1
prunus_persica	Prupe.6G187500_v2.0.a1
pyrus_communis	pycom01g05840 pycom15g28540
rosa_chinensis	RchiOBHm_Chr2g0113451
rosa_laevigata	RLG00000018064
rosa_multiflora	Rmu_sc0007415.1_g000018 Rmu_sc0020459.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129230 Rroxscaffold_2G00129930
rosa_rugosa	Rorug02G0187600
rosa_samantha	Rh2AG242100 Rh2BG256000 Rh2CG246300 Rh2DG250000
rosa_wichuraiana	Rw0G018830 Rw2G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1201
Acc65I	GGTACC	1 cut(s)	1013
AccB1I	GGYRCC	3 cut(s)	589, 874, 1013
AccBSI	CCGCTC	1 cut(s)	355
AccII	CGCG	2 cut(s)	12, 213
AccIII	TCCGGA	1 cut(s)	747
AclI	AACGTT	1 cut(s)	443
AclWI	GGATC	4 cut(s)	31, 36, 50, 385
AcoI	YGGCCR	3 cut(s)	144, 208, 426
AcsI	RAATTY	3 cut(s)	307, 565, 673
AcuI	CTGAAG	3 cut(s)	864, 960, 1080
AcyI	GRCGYC	1 cut(s)	900
AfaI	GTAC	5 cut(s)	479, 486, 629, 1015, 1247
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	22, 438, 818, 1082, 1103
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	9 cut(s)	240, 419, 472, 514, 704, 716, 764, 923, 1203
AluI	AGCT	9 cut(s)	240, 419, 472, 514, 704, 716, 764, 923, 1203
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	3 cut(s)	121, 946, 1087
AlwI	GGATC	4 cut(s)	31, 36, 50, 385
Ama87I	CYCGRG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	747
AoxI	GGCC	3 cut(s)	144, 208, 426
ApeKI	GCWGC	3 cut(s)	698, 701, 1226
ApoI	RAATTY	3 cut(s)	307, 565, 673
Asp718I	GGTACC	1 cut(s)	1013
AspLEI	GCGC	1 cut(s)	14
AsuHPI	GGTGA	4 cut(s)	503, 655, 927, 989
AvaI	CYCGRG	1 cut(s)	473
BanI	GGYRCC	3 cut(s)	589, 874, 1013
BanII	GRGCYC	1 cut(s)	516
BarI	GAAGNNNNNNTAC	2 cut(s)	862, 894
BbsI	GAAGAC	1 cut(s)	1272
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	685, 713, 1213
BccI	CCATC	5 cut(s)	242, 645, 751, 1228, 1238
BceAI	ACGGC	4 cut(s)	34, 330, 603, 913
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	121, 946, 1087
BfmI	CTRYAG	1 cut(s)	699
BfuAI	ACCTGC	1 cut(s)	1201
Bme1390I	CCNGG	1 cut(s)	768
BmeT110I	CYCGRG	1 cut(s)	473
BmiI	GGNNCC	3 cut(s)	591, 876, 1015
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	1272
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	479, 522
BsaAI	YACGTR	2 cut(s)	488, 627
BsaHI	GRCGYC	1 cut(s)	900
BsaJI	CCNNGG	4 cut(s)	79, 211, 429, 735
BsaWI	WCCGGW	1 cut(s)	747
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	2 cut(s)	14, 1046
BseAI	TCCGGA	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	4 cut(s)	79, 211, 429, 735
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseRI	GAGGAG	3 cut(s)	62, 444, 1105
BseXI	GCAGC	3 cut(s)	685, 713, 1213
BseYI	CCCAGC	1 cut(s)	1199
BsgI	GTGCAG	2 cut(s)	906, 1152
Bsh1236I	CGCG	2 cut(s)	12, 213
BshFI	GGCC	3 cut(s)	146, 210, 428
BshNI	GGYRCC	3 cut(s)	589, 874, 1013
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	5 cut(s)	15, 143, 748, 1047, 1115
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	3 cut(s)	121, 946, 1087
BsmBI	CGTCTC	1 cut(s)	121
BsmI	GAATGC	2 cut(s)	931, 994
BsnI	GGCC	3 cut(s)	146, 210, 428
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp13I	TCCGGA	1 cut(s)	747
Bsp143I	GATC	5 cut(s)	36, 41, 55, 106, 377
Bsp19I	CCATGG	2 cut(s)	429, 735
BspANI	GGCC	3 cut(s)	146, 210, 428
BspEI	TCCGGA	1 cut(s)	747
BspFNI	CGCG	2 cut(s)	12, 213
BspLI	GGNNCC	3 cut(s)	591, 876, 1015
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	1 cut(s)	1201
BspPI	GGATC	4 cut(s)	31, 36, 50, 385
BspQI	GCTCTTC	1 cut(s)	315
BspT107I	GGYRCC	3 cut(s)	589, 874, 1013
BsrBI	CCGCTC	1 cut(s)	355
BsrFI	RCCGGY	2 cut(s)	14, 1046
BssAI	RCCGGY	2 cut(s)	14, 1046
BssECI	CCNNGG	4 cut(s)	79, 211, 429, 735
BssMI	GATC	5 cut(s)	36, 41, 55, 106, 377
BssNI	GRCGYC	1 cut(s)	900
BssT1I	CCWWGG	2 cut(s)	429, 735
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	3 cut(s)	115, 193, 1032
Bst6I	CTCTTC	2 cut(s)	80, 315
BstACI	GRCGYC	1 cut(s)	900
BstAPI	GCANNNNNTGC	1 cut(s)	1145
BstBAI	YACGTR	2 cut(s)	488, 627
BstC8I	GCNNGC	2 cut(s)	327, 731
BstDSI	CCRYGG	3 cut(s)	211, 429, 735
BstFNI	CGCG	2 cut(s)	12, 213
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	5 cut(s)	39, 44, 58, 109, 380
BstMAI	GTCTC	3 cut(s)	121, 946, 1087
BstMBI	GATC	5 cut(s)	36, 41, 55, 106, 377
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 698, 730, 1145, 1184
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	699
BstSNI	TACGTA	1 cut(s)	627
BstUI	CGCG	2 cut(s)	12, 213
BstV1I	GCAGC	3 cut(s)	685, 713, 1213
BstV2I	GAAGAC	1 cut(s)	1272
BsuRI	GGCC	3 cut(s)	146, 210, 428
BtgI	CCRYGG	3 cut(s)	211, 429, 735
BveI	ACCTGC	1 cut(s)	1201
Cac8I	GCNNGC	2 cut(s)	327, 731
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	2 cut(s)	14, 1046
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	1 cut(s)	889
Csp6I	GTAC	5 cut(s)	478, 485, 628, 1014, 1246
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	4 cut(s)	430, 736, 811, 964
CviQI	GTAC	5 cut(s)	478, 485, 628, 1014, 1246
DpnI	GATC	5 cut(s)	38, 43, 57, 108, 379
DpnII	GATC	5 cut(s)	36, 41, 55, 106, 377
EaeI	YGGCCR	3 cut(s)	144, 208, 426
Eam1104I	CTCTTC	2 cut(s)	80, 315
EarI	CTCTTC	2 cut(s)	80, 315
EciI	GGCGGA	4 cut(s)	231, 332, 347, 794
Ecl136II	GAGCTC	1 cut(s)	514
Eco105I	TACGTA	1 cut(s)	627
Eco130I	CCWWGG	2 cut(s)	429, 735
Eco24I	GRGCYC	1 cut(s)	516
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	3 cut(s)	864, 960, 1080
Eco88I	CYCGRG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	2 cut(s)	429, 735
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	429, 735
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	433, 739, 814, 967
FatI	CATG	4 cut(s)	429, 735, 810, 963
FauI	CCCGC	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	516
GlaI	GCGC	1 cut(s)	13
GsaI	CCCAGC	1 cut(s)	1203
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	146, 210, 428
HapII	CCGG	5 cut(s)	15, 143, 748, 1047, 1115
HgaI	GACGC	1 cut(s)	889
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	900
Hin1II	CATG	4 cut(s)	433, 739, 814, 967
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	8 cut(s)	272, 533, 665, 814, 828, 954, 1261, 1277
HpaII	CCGG	5 cut(s)	15, 143, 748, 1047, 1115
HphI	GGTGA	4 cut(s)	503, 655, 927, 989
Hpy166II	GTNNAC	1 cut(s)	1246
Hpy188I	TCNGA	5 cut(s)	41, 55, 247, 959, 1060
Hpy188III	TCNNGA	9 cut(s)	59, 269, 276, 414, 438, 458, 520, 748, 995
Hpy8I	GTNNAC	1 cut(s)	1246
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	9 cut(s)	136, 149, 343, 367, 818, 888, 935, 968, 1109
HpyCH4III	ACNGT	3 cut(s)	115, 193, 1032
HpyCH4IV	ACGT	3 cut(s)	443, 487, 626
HpyCH4V	TGCA	8 cut(s)	4, 701, 887, 931, 1108, 1133, 1139, 1210
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 698, 730, 1145, 1184
HpySE526I	ACGT	3 cut(s)	443, 487, 626
Hsp92I	GRCGYC	1 cut(s)	900
Hsp92II	CATG	4 cut(s)	433, 739, 814, 967
HspAI	GCGC	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	747
KpnI	GGTACC	1 cut(s)	1017
Ksp22I	TGATCA	1 cut(s)	106
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	36, 41, 55, 106, 377
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	5 cut(s)	75, 352, 416, 457, 769
Lsp1109I	GCAGC	3 cut(s)	685, 713, 1213
LweI	GCATC	1 cut(s)	412
MaeII	ACGT	3 cut(s)	443, 487, 626
MaeIII	GTNAC	1 cut(s)	977
MalI	GATC	5 cut(s)	38, 43, 57, 108, 379
MbiI	CCGCTC	1 cut(s)	355
MboI	GATC	5 cut(s)	36, 41, 55, 106, 377
MboII	GAAGA	9 cut(s)	67, 332, 511, 572, 823, 1162, 1256, 1270, 1272
MfeI	CAATTG	1 cut(s)	1041
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	7 cut(s)	307, 565, 607, 673, 708, 792, 1041
MlyI	GAGTC	2 cut(s)	948, 1286
MmeI	TCCRAC	1 cut(s)	982
MroI	TCCGGA	1 cut(s)	747
MseI	TTAA	2 cut(s)	597, 1127
MspA1I	CMGCKG	2 cut(s)	213, 704
MspI	CCGG	5 cut(s)	15, 143, 748, 1047, 1115
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	1041
Mva1269I	GAATGC	2 cut(s)	931, 994
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	2 cut(s)	12, 213
MwoI	GCNNNNNNNGC	5 cut(s)	425, 698, 730, 1145, 1184
NcoI	CCATGG	2 cut(s)	429, 735
NdeII	GATC	5 cut(s)	36, 41, 55, 106, 377
NlaIII	CATG	4 cut(s)	433, 739, 814, 967
NlaIV	GGNNCC	3 cut(s)	591, 876, 1015
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	977
PaeR7I	CTCGAG	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PctI	GAATGC	2 cut(s)	931, 994
PfeI	GAWTC	6 cut(s)	272, 533, 665, 814, 828, 1261
PleI	GAGTC	2 cut(s)	948, 1285
PpsI	GAGTC	2 cut(s)	948, 1285
Ppu21I	YACGTR	2 cut(s)	488, 627
Psp124BI	GAGCTC	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	1199
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	3 cut(s)	591, 876, 1015
PspXI	VCTCGAGB	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	5 cut(s)	479, 486, 629, 1015, 1247
RsaNI	GTAC	5 cut(s)	478, 485, 628, 1014, 1246
SacI	GAGCTC	1 cut(s)	516
SacII	CCGCGG	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	597, 1127
Sau3AI	GATC	5 cut(s)	36, 41, 55, 106, 377
SchI	GAGTC	2 cut(s)	948, 1286
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	1 cut(s)	699
Sfr274I	CTCGAG	1 cut(s)	473
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	473
SmlI	CTYRAG	3 cut(s)	458, 473, 537
SmoI	CTYRAG	3 cut(s)	458, 473, 537
SnaBI	TACGTA	1 cut(s)	627
Sse9I	AATT	7 cut(s)	307, 565, 607, 673, 708, 792, 1041
SspI	AATATT	1 cut(s)	577
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	2 cut(s)	429, 735
TaaI	ACNGT	3 cut(s)	115, 193, 1032
TaiI	ACGT	3 cut(s)	446, 490, 629
TaqI	TCGA	2 cut(s)	311, 474
TasI	AATT	7 cut(s)	307, 565, 607, 673, 708, 792, 1041
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	7 cut(s)	87, 90, 213, 216, 332, 428, 1067
TfiI	GAWTC	6 cut(s)	272, 533, 665, 814, 828, 1261
Tru1I	TTAA	2 cut(s)	597, 1127
Tru9I	TTAA	2 cut(s)	597, 1127
TseFI	GTSAC	1 cut(s)	977
TseI	GCWGC	3 cut(s)	698, 701, 1226
Tsp45I	GTSAC	1 cut(s)	977
TspDTI	ATGAA	4 cut(s)	404, 980, 1271, 1272
XapI	RAATTY	3 cut(s)	307, 565, 673
XhoI	CTCGAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.