Rroxscaffold_2G00129230

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
65049446 .. 65052472
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129230.1

Sequence Viewer

Length: 1206 bp
ATGCACCACCGCGCCGGTTTCAACCTCTCTCGCTTGATCCAATCCCCGCCGTCCGATCCCGACCCCTCGCTCCTCTTCCTCGGCGGCGGCTTGTTCCTCCACCCTGATCAAACCGTCTCTCCTACCTTCCTTTCCCTCCTTCCGGCCAAGTCCAAGACCCGTTCGGATGGAAACGAGGGGTATGTTCGGGAATCGGGAGAAGTCCTGGGGCAAAATGGGAATAAAAATTCGACGGCGGAAGAGCAGGCGGCGGAGGTTGTGTTTGAGAAGGAGCGGAGTGAGATTGTGGAGAAGGGGTCGGGTGCTATGAATACTACCAAGCATCTCTGGTCTGGAGCTGTTGCTGCCATGGTTTCAAGAACGTTTGTTGCTCCTCTCGAGAGGCTAAAGCTTGAGTACATAGTACGTGGTGAGCAGAAGAACTTGTTTGAGCTCATCAAGACGATTGCAGATTCTCAAGGGCTGAAAGGATTTTGGAAAGGGAATTTTGTGAATATTCTTCGCACGGCACCCTTTAAGGCTATCAATTTCTATGCCTATGATACGTACAGAAACCATCTGGTGAAGTTGTCGGGAAATGAGGAATCCACGAATTTTGAGAGGTTTCTTGCTGGTGCTGCGGCCGGAATTACAGCTACCTTGCTTTGCTTGCCCATGGACACTATCCGGACAAAGATGGTAGCTCCTGGTGGAGAAGCATTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATTCAAACCGAAGGATTCTTCTCTCTTTACAAGGGCTTACTACCCTCTATTGTCAGTATGGCACCTTCAGGTGCAGTTTTCTACGGCGTCTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGAGGGAGAGACTCCGACACATGAAACAAGAAGGTGACAAACTGAATGCTCTGGAACAAATGGAGTTGGGCACCATTAGAACATTACTGTATGGGGCAATTGCTGGTTGTTGCTCTGAAGCCGCTACATATCCTTTTGAAGTTGTGAGGAGACACCTTCAAATGCAAGTTCCGGCAACTAGATTAAGTGCAGTTGCAACTTGTGCGAAGATTGTTGAGCAAGGAGGCGTTCCTGCTCTTTATGCTGGATTGATACCCAGCTTGTTGCAGGTCTTACCATCTGCTGCCATCAGTTATTTTGTGTACGAGTTCATGAAGATTCTTCTCAAAGTAGAGTCTTCATAG

Protein Analysis

401

Amino Acids

43.84

Weight (kDa)

8.5

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 103 - 189 9.9e-20 Mitochondrial carrier protein
Mito_carr PF00153 196 - 283 1.9e-20 Mitochondrial carrier protein
Mito_carr PF00153 311 - 397 5.7e-19 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1120
AccB1I GGYRCC 3 cut(s) 508, 793, 932
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 1 cut(s) 12
AccIII TCCGGA 1 cut(s) 666
AclI AACGTT 1 cut(s) 362
AclWI GGATC 2 cut(s) 31, 50
AcoI YGGCCR 2 cut(s) 144, 621
AcsI RAATTY 3 cut(s) 226, 484, 592
AcuI CTGAAG 3 cut(s) 783, 879, 999
AcyI GRCGYC 1 cut(s) 819
AfaI GTAC 4 cut(s) 398, 405, 548, 1166
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 5 cut(s) 22, 357, 737, 1001, 1022
AjnI CCWGG 2 cut(s) 204, 685
AluBI AGCT 7 cut(s) 338, 391, 433, 635, 683, 842, 1122
AluI AGCT 7 cut(s) 338, 391, 433, 635, 683, 842, 1122
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 3 cut(s) 121, 865, 1006
AlwI GGATC 2 cut(s) 31, 50
Ama87I CYCGRG 1 cut(s) 377
Aor13HI TCCGGA 1 cut(s) 666
AoxI GGCC 2 cut(s) 144, 621
ApeKI GCWGC 3 cut(s) 344, 617, 1145
ApoI RAATTY 3 cut(s) 226, 484, 592
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 4 cut(s) 422, 574, 846, 908
AvaI CYCGRG 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 935
BanI GGYRCC 3 cut(s) 508, 793, 932
BanII GRGCYC 1 cut(s) 435
BarI GAAGNNNNNNTAC 2 cut(s) 781, 813
BbsI GAAGAC 1 cut(s) 1191
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 331, 604, 1132
BccI CCATC 5 cut(s) 161, 564, 670, 1147, 1157
BceAI ACGGC 4 cut(s) 34, 249, 522, 832
BciT130I CCWGG 2 cut(s) 206, 687
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 3 cut(s) 121, 865, 1006
BfaI CTAG 1 cut(s) 1041
BfuAI ACCTGC 1 cut(s) 1120
BisI GCNGC 8 cut(s) 85, 88, 249, 345, 618, 621, 984, 1146
BlsI GCNGC 8 cut(s) 86, 89, 250, 346, 619, 622, 985, 1147
Bme1390I CCNGG 2 cut(s) 206, 687
BmeT110I CYCGRG 1 cut(s) 377
BmiI GGNNCC 3 cut(s) 510, 795, 934
BmrFI CCNGG 2 cut(s) 206, 687
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 1191
BpmI CTGGAG 1 cut(s) 354
BpuEI CTTGAG 2 cut(s) 413, 441
BsaAI YACGTR 2 cut(s) 407, 546
BsaHI GRCGYC 1 cut(s) 819
BsaJI CCNNGG 4 cut(s) 79, 205, 348, 654
BsaWI WCCGGW 1 cut(s) 666
BsaXI ACNNNNNCTCC 6 cut(s) 103, 133, 245, 275, 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 14
BseAI TCCGGA 1 cut(s) 666
BseBI CCWGG 2 cut(s) 206, 687
BseDI CCNNGG 4 cut(s) 79, 205, 348, 654
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 142
BseRI GAGGAG 3 cut(s) 62, 363, 1024
BseSI GKGCMC 1 cut(s) 935
BseX3I CGGCCG 1 cut(s) 621
BseXI GCAGC 3 cut(s) 331, 604, 1132
BseYI CCCAGC 1 cut(s) 1118
BsgI GTGCAG 2 cut(s) 825, 1071
Bsh1236I CGCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 624
BshFI GGCC 2 cut(s) 146, 623
BshNI GGYRCC 3 cut(s) 508, 793, 932
BsiEI CGRYCG 1 cut(s) 624
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 5 cut(s) 15, 143, 624, 667, 1034
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 3 cut(s) 121, 865, 1006
BsmBI CGTCTC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 850, 913
BsnI GGCC 2 cut(s) 146, 623
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 435, 935
Bsp13I TCCGGA 1 cut(s) 666
Bsp143I GATC 3 cut(s) 36, 55, 106
Bsp19I CCATGG 2 cut(s) 348, 654
BspANI GGCC 2 cut(s) 146, 623
BspEI TCCGGA 1 cut(s) 666
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 1173
BspLI GGNNCC 3 cut(s) 510, 795, 934
BspMI ACCTGC 1 cut(s) 1120
BspPI GGATC 2 cut(s) 31, 50
BspQI GCTCTTC 1 cut(s) 234
BspT107I GGYRCC 3 cut(s) 508, 793, 932
BsrBI CCGCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 4 cut(s) 79, 205, 348, 654
BssMI GATC 3 cut(s) 36, 55, 106
BssNI GRCGYC 1 cut(s) 819
BssT1I CCWWGG 2 cut(s) 348, 654
Bst2UI CCWGG 2 cut(s) 206, 687
Bst4CI ACNGT 2 cut(s) 115, 951
Bst6I CTCTTC 2 cut(s) 80, 234
BstACI GRCGYC 1 cut(s) 819
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBAI YACGTR 2 cut(s) 407, 546
BstC8I GCNNGC 2 cut(s) 246, 650
BstDSI CCRYGG 2 cut(s) 348, 654
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 39, 58, 109
BstMAI GTCTC 3 cut(s) 121, 865, 1006
BstMBI GATC 3 cut(s) 36, 55, 106
BstMCI CGRYCG 1 cut(s) 624
BstMWI GCNNNNNNNGC 5 cut(s) 344, 617, 649, 1064, 1103
BstNI CCWGG 2 cut(s) 206, 687
BstSCI CCNGG 2 cut(s) 204, 685
BstSLI GKGCMC 1 cut(s) 935
BstSNI TACGTA 1 cut(s) 546
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 3 cut(s) 331, 604, 1132
BstV2I GAAGAC 1 cut(s) 1191
BstZI CGGCCG 1 cut(s) 621
BsuRI GGCC 2 cut(s) 146, 623
BtgI CCRYGG 2 cut(s) 348, 654
BtsCI GGATG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 1120
Cac8I GCNNGC 2 cut(s) 246, 650
CciI TCATGA 1 cut(s) 1173
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 14
CseI GACGC 1 cut(s) 808
Csp6I GTAC 4 cut(s) 397, 404, 547, 1165
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 5 cut(s) 349, 655, 730, 883, 1174
CviQI GTAC 4 cut(s) 397, 404, 547, 1165
DpnI GATC 3 cut(s) 38, 57, 108
DpnII GATC 3 cut(s) 36, 55, 106
EaeI YGGCCR 2 cut(s) 144, 621
EagI CGGCCG 1 cut(s) 621
Eam1104I CTCTTC 2 cut(s) 80, 234
EarI CTCTTC 2 cut(s) 80, 234
EciI GGCGGA 3 cut(s) 251, 266, 713
Ecl136II GAGCTC 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 621
Eco105I TACGTA 1 cut(s) 546
Eco130I CCWWGG 2 cut(s) 348, 654
Eco24I GRGCYC 1 cut(s) 435
Eco52I CGGCCG 1 cut(s) 621
Eco53kI GAGCTC 1 cut(s) 433
Eco57I CTGAAG 3 cut(s) 783, 879, 999
Eco88I CYCGRG 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 204, 685
EcoT14I CCWWGG 2 cut(s) 348, 654
EcoT38I GRGCYC 1 cut(s) 435
ErhI CCWWGG 2 cut(s) 348, 654
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 5 cut(s) 352, 658, 733, 886, 1177
FatI CATG 5 cut(s) 348, 654, 729, 882, 1173
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 8 cut(s) 85, 88, 249, 345, 618, 621, 984, 1146
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 8 cut(s) 85, 88, 249, 345, 618, 621, 984, 1146
FspBI CTAG 1 cut(s) 1041
GlaI GCGC 1 cut(s) 13
GluI GCNGC 8 cut(s) 85, 88, 249, 345, 618, 621, 984, 1146
GsaI CCCAGC 1 cut(s) 1122
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 2 cut(s) 146, 623
HapII CCGG 5 cut(s) 15, 143, 624, 667, 1034
HgaI GACGC 1 cut(s) 808
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 819
Hin1II CATG 5 cut(s) 352, 658, 733, 886, 1177
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 8 cut(s) 191, 452, 584, 733, 747, 873, 1180, 1196
HpaII CCGG 5 cut(s) 15, 143, 624, 667, 1034
HphI GGTGA 4 cut(s) 422, 574, 846, 908
Hpy166II GTNNAC 1 cut(s) 1165
Hpy188I TCNGA 4 cut(s) 55, 166, 878, 979
Hpy8I GTNNAC 1 cut(s) 1165
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 9 cut(s) 136, 149, 262, 286, 737, 807, 854, 887, 1028
HpyCH4III ACNGT 2 cut(s) 115, 951
HpyCH4IV ACGT 3 cut(s) 362, 406, 545
HpyCH4V TGCA 8 cut(s) 4, 449, 806, 850, 1027, 1052, 1058, 1129
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 617, 649, 1064, 1103
HpySE526I ACGT 3 cut(s) 362, 406, 545
Hsp92I GRCGYC 1 cut(s) 819
Hsp92II CATG 5 cut(s) 352, 658, 733, 886, 1177
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 36, 55, 106
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 5 cut(s) 75, 271, 335, 376, 688
Lsp1109I GCAGC 3 cut(s) 331, 604, 1132
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 1041
MaeII ACGT 3 cut(s) 362, 406, 545
MaeIII GTNAC 1 cut(s) 896
MalI GATC 3 cut(s) 38, 57, 108
MbiI CCGCTC 1 cut(s) 274
MboI GATC 3 cut(s) 36, 55, 106
MboII GAAGA 9 cut(s) 67, 251, 430, 491, 742, 1081, 1175, 1189, 1191
MfeI CAATTG 1 cut(s) 960
MhlI GDGCHC 2 cut(s) 435, 935
MluCI AATT 7 cut(s) 226, 484, 526, 592, 627, 711, 960
MlyI GAGTC 2 cut(s) 867, 1205
MmeI TCCRAC 1 cut(s) 901
MroI TCCGGA 1 cut(s) 666
MseI TTAA 2 cut(s) 516, 1046
MspI CCGG 5 cut(s) 15, 143, 624, 667, 1034
MspR9I CCNGG 2 cut(s) 206, 687
MunI CAATTG 1 cut(s) 960
Mva1269I GAATGC 2 cut(s) 850, 913
MvaI CCWGG 2 cut(s) 206, 687
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 5 cut(s) 344, 617, 649, 1064, 1103
NcoI CCATGG 2 cut(s) 348, 654
NdeII GATC 3 cut(s) 36, 55, 106
NlaIII CATG 5 cut(s) 352, 658, 733, 886, 1177
NlaIV GGNNCC 3 cut(s) 510, 795, 934
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 896
PaeR7I CTCGAG 1 cut(s) 377
PagI TCATGA 1 cut(s) 1173
PciSI GCTCTTC 1 cut(s) 234
PctI GAATGC 2 cut(s) 850, 913
PfeI GAWTC 6 cut(s) 191, 452, 584, 733, 747, 1180
PkrI GCNGC 8 cut(s) 86, 89, 250, 346, 619, 622, 985, 1147
PleI GAGTC 2 cut(s) 867, 1204
PpsI GAGTC 2 cut(s) 867, 1204
Ppu21I YACGTR 2 cut(s) 407, 546
Psp124BI GAGCTC 1 cut(s) 435
Psp1406I AACGTT 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 204, 685
PspFI CCCAGC 1 cut(s) 1118
PspGI CCWGG 2 cut(s) 204, 685
PspN4I GGNNCC 3 cut(s) 510, 795, 934
RsaI GTAC 4 cut(s) 398, 405, 548, 1166
RsaNI GTAC 4 cut(s) 397, 404, 547, 1165
SacI GAGCTC 1 cut(s) 435
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 516, 1046
SatI GCNGC 8 cut(s) 85, 88, 249, 345, 618, 621, 984, 1146
Sau3AI GATC 3 cut(s) 36, 55, 106
SchI GAGTC 2 cut(s) 867, 1205
ScrFI CCNGG 2 cut(s) 206, 687
SduI GDGCHC 2 cut(s) 435, 935
SfaNI GCATC 1 cut(s) 331
Sfr274I CTCGAG 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 377
SmlI CTYRAG 3 cut(s) 377, 392, 456
SmoI CTYRAG 3 cut(s) 377, 392, 456
SnaBI TACGTA 1 cut(s) 546
Sse9I AATT 7 cut(s) 226, 484, 526, 592, 627, 711, 960
SspI AATATT 1 cut(s) 496
SspMI CTAG 1 cut(s) 1041
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 204, 685
StyI CCWWGG 2 cut(s) 348, 654
TaaI ACNGT 2 cut(s) 115, 951
TaiI ACGT 3 cut(s) 365, 409, 548
TaqI TCGA 2 cut(s) 230, 378
TasI AATT 7 cut(s) 226, 484, 526, 592, 627, 711, 960
TatI WGTACW 1 cut(s) 396
TauI GCSGC 5 cut(s) 87, 90, 251, 623, 986
TfiI GAWTC 6 cut(s) 191, 452, 584, 733, 747, 1180
Tru1I TTAA 2 cut(s) 516, 1046
Tru9I TTAA 2 cut(s) 516, 1046
TseFI GTSAC 1 cut(s) 896
TseI GCWGC 3 cut(s) 344, 617, 1145
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 5 cut(s) 323, 899, 1162, 1190, 1191
XapI RAATTY 3 cut(s) 226, 484, 592
XhoI CTCGAG 1 cut(s) 377
XspI CTAG 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.