Rh2DG250000

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
25705886 .. 25708737
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG250000.1

Sequence Viewer

Length: 1293 bp
ATGCACCACCGCGCCGGTTTCACCCTCTCTCGCTTGATCCAATCCCCGCCGTCCGATCCCGACCCCTCGCTCCTATTCCTCGGCGGCGGTTTGTTCCTCCACCCTGATCAAACCGTCTCTCCCACCTTCCTTTCCCTCCTTCCGGCCAAGTCCAAGACCCGTTCCCGTTCGGGTTCGGGTCGGTGTTTCAGCAAAACGGTGCGCTTTTGGGGTGGCCGCGGCGGAGGGGCGTTCTTGTGTGTAAGCTTGTCAGATGGAAACGAGGGGTATGTTCGGGAATCGGGAGAAGTCCTGGGGCAAAATGGGAATAAAAATTCGACGGCGGAAGAGCAGGCGGCGGAGGTTGTGTTTGAGAAGGAGCGGAGTGAGATTGTGGAGAAGGGATCAGGTGCTATGAATACTACCAAGCATCTCTGGTCTGGAGCTGTTGCTGCCATGGTTTCAAGAACGTTTGTTGCTCCTCTCGAGAGGCTAAAGCTGGAGTACATAGTACGTGGTGAGCAGAAGAACTTGTTTGAGCTCATCAAGACGATTGCAGATTCTCAAGGGCTGAAAGGATTTTGGAAAGGGAATTTTGTGAATATTCTTCGCACGGCACCCTTCAAGGCTATCAATTTCTATGCCTATGATACGTACAGAAATCATCTGGTGAAGTTGTCGGGGAATGAGGAATCCACGAATTTTGAGAGGTTTCTTGCTGGTGCTGCAGCTGGAATTACAGCTACCTTGCTCTGCTTGCCCATGGACACTATCCGGACAAAGATGGTAGCTCCTGGTGGAGAAGCATTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATTCAAACCGAAGGATTCTTCTCTCTTTACAAGGGCTTACTACCCTCCATTGTCAGTATGGCACCTTCAGGTGCAGTTTTCTACGGCGTCTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGAGGGAGAGACTTCGACACATGAAACAAGAAGGTGGCAAACTGAATGCTCTGGAACAAATGGAGTTGGGTACCATTAGAACATTACTGTATGGAGCAATTGCCGGTTGTTGCTCTGAAGCCGCTACATATCCTTTTGAAGTTGTGAGGAGACACCTTCAATTGCAAGTTCCGGCAACTAGATTAAGTGCAGTTGCAACTTGTGCGAAGATTGTTGAGCAAGGAGGCGTTCCTGCTCTTTATGCTGGATTGATACCCAGCTTGTTGCAGGTCTTACCATCTGCTGCCATCAGTTATTTTGTGTACGAGTTCATGAAGATTCTTCTAAAAGTAGAGTCTTCATAG

Protein Analysis

430

Amino Acids

46.76

Weight (kDa)

9.15

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 132 - 218 1.1e-19 Mitochondrial carrier protein
Mito_carr PF00153 225 - 312 2.1e-20 Mitochondrial carrier protein
Mito_carr PF00153 340 - 426 1.2e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1207
Acc65I GGTACC 1 cut(s) 1019
AccB1I GGYRCC 3 cut(s) 595, 880, 1019
AccBSI CCGCTC 1 cut(s) 361
AccII CGCG 2 cut(s) 12, 219
AccIII TCCGGA 1 cut(s) 753
AclI AACGTT 1 cut(s) 449
AclWI GGATC 3 cut(s) 31, 50, 391
AcoI YGGCCR 2 cut(s) 144, 214
AcsI RAATTY 3 cut(s) 313, 571, 679
AcuI CTGAAG 3 cut(s) 870, 966, 1086
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 5 cut(s) 485, 492, 635, 1021, 1253
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 5 cut(s) 444, 604, 824, 1088, 1109
AjnI CCWGG 2 cut(s) 291, 772
AluBI AGCT 9 cut(s) 246, 425, 478, 520, 710, 722, 770, 929, 1209
AluI AGCT 9 cut(s) 246, 425, 478, 520, 710, 722, 770, 929, 1209
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 3 cut(s) 121, 952, 1093
AlwI GGATC 3 cut(s) 31, 50, 391
Ama87I CYCGRG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 753
AoxI GGCC 2 cut(s) 144, 214
ApeKI GCWGC 4 cut(s) 431, 704, 707, 1232
ApoI RAATTY 3 cut(s) 313, 571, 679
Asp718I GGTACC 1 cut(s) 1019
AspLEI GCGC 2 cut(s) 14, 204
AsuHPI GGTGA 4 cut(s) 13, 509, 661, 933
AvaI CYCGRG 1 cut(s) 464
BanI GGYRCC 3 cut(s) 595, 880, 1019
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 868, 900
BbsI GAAGAC 1 cut(s) 1278
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 4 cut(s) 418, 691, 719, 1219
BccI CCATC 4 cut(s) 248, 757, 1234, 1244
BceAI ACGGC 4 cut(s) 34, 336, 609, 919
BciT130I CCWGG 2 cut(s) 293, 774
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 3 cut(s) 121, 952, 1093
BfaI CTAG 1 cut(s) 1128
BfmI CTRYAG 1 cut(s) 705
BfuAI ACCTGC 1 cut(s) 1207
BisI GCNGC 9 cut(s) 85, 217, 220, 336, 432, 705, 708, 1071, 1233
BlsI GCNGC 9 cut(s) 86, 218, 221, 337, 433, 706, 709, 1072, 1234
Bme1390I CCNGG 2 cut(s) 293, 774
BmeT110I CYCGRG 1 cut(s) 464
BmiI GGNNCC 3 cut(s) 597, 882, 1021
BmrFI CCNGG 2 cut(s) 293, 774
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 1278
BpmI CTGGAG 2 cut(s) 441, 500
BpuEI CTTGAG 1 cut(s) 528
BsaAI YACGTR 2 cut(s) 494, 633
BsaHI GRCGYC 1 cut(s) 906
BsaJI CCNNGG 5 cut(s) 79, 217, 292, 435, 741
BsaWI WCCGGW 1 cut(s) 753
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 332, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 2 cut(s) 14, 1052
BseAI TCCGGA 1 cut(s) 753
BseBI CCWGG 2 cut(s) 293, 774
BseDI CCNNGG 5 cut(s) 79, 217, 292, 435, 741
BseLI CCNNNNNNNGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 450, 1111
BseXI GCAGC 4 cut(s) 418, 691, 719, 1219
BseYI CCCAGC 1 cut(s) 1205
BsgI GTGCAG 2 cut(s) 912, 1158
Bsh1236I CGCG 2 cut(s) 12, 219
BshFI GGCC 2 cut(s) 146, 216
BshNI GGYRCC 3 cut(s) 595, 880, 1019
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 5 cut(s) 15, 143, 754, 1053, 1121
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 3 cut(s) 121, 952, 1093
BsmBI CGTCTC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 937, 1000
BsnI GGCC 2 cut(s) 146, 216
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 522
Bsp13I TCCGGA 1 cut(s) 753
Bsp143I GATC 4 cut(s) 36, 55, 106, 383
Bsp19I CCATGG 2 cut(s) 435, 741
BspANI GGCC 2 cut(s) 146, 216
BspEI TCCGGA 1 cut(s) 753
BspFNI CGCG 2 cut(s) 12, 219
BspHI TCATGA 1 cut(s) 1260
BspLI GGNNCC 3 cut(s) 597, 882, 1021
BspMAI CTGCAG 1 cut(s) 709
BspMI ACCTGC 1 cut(s) 1207
BspPI GGATC 3 cut(s) 31, 50, 391
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 3 cut(s) 595, 880, 1019
BsrBI CCGCTC 1 cut(s) 361
BsrFI RCCGGY 2 cut(s) 14, 1052
BssAI RCCGGY 2 cut(s) 14, 1052
BssECI CCNNGG 5 cut(s) 79, 217, 292, 435, 741
BssMI GATC 4 cut(s) 36, 55, 106, 383
BssNI GRCGYC 1 cut(s) 906
BssT1I CCWWGG 2 cut(s) 435, 741
Bst2UI CCWGG 2 cut(s) 293, 774
Bst4CI ACNGT 3 cut(s) 115, 199, 1038
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 906
BstAPI GCANNNNNTGC 1 cut(s) 1151
BstBAI YACGTR 2 cut(s) 494, 633
BstC8I GCNNGC 2 cut(s) 333, 737
BstDSI CCRYGG 3 cut(s) 217, 435, 741
BstFNI CGCG 2 cut(s) 12, 219
BstHHI GCGC 2 cut(s) 14, 204
BstKTI GATC 4 cut(s) 39, 58, 109, 386
BstMAI GTCTC 3 cut(s) 121, 952, 1093
BstMBI GATC 4 cut(s) 36, 55, 106, 383
BstMWI GCNNNNNNNGC 5 cut(s) 431, 704, 736, 1151, 1190
BstNI CCWGG 2 cut(s) 293, 774
BstSCI CCNGG 2 cut(s) 291, 772
BstSFI CTRYAG 1 cut(s) 705
BstSNI TACGTA 1 cut(s) 633
BstUI CGCG 2 cut(s) 12, 219
BstV1I GCAGC 4 cut(s) 418, 691, 719, 1219
BstV2I GAAGAC 1 cut(s) 1278
BsuRI GGCC 2 cut(s) 146, 216
BtgI CCRYGG 3 cut(s) 217, 435, 741
BveI ACCTGC 1 cut(s) 1207
Cac8I GCNNGC 2 cut(s) 333, 737
CciI TCATGA 1 cut(s) 1260
CfoI GCGC 2 cut(s) 14, 204
Cfr10I RCCGGY 2 cut(s) 14, 1052
Cfr42I CCGCGG 1 cut(s) 220
CseI GACGC 1 cut(s) 895
Csp6I GTAC 5 cut(s) 484, 491, 634, 1020, 1252
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 5 cut(s) 436, 742, 817, 970, 1261
CviQI GTAC 5 cut(s) 484, 491, 634, 1020, 1252
DpnI GATC 4 cut(s) 38, 57, 108, 385
DpnII GATC 4 cut(s) 36, 55, 106, 383
EaeI YGGCCR 2 cut(s) 144, 214
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 4 cut(s) 237, 338, 353, 800
Ecl136II GAGCTC 1 cut(s) 520
Eco105I TACGTA 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 435, 741
Eco24I GRGCYC 1 cut(s) 522
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 3 cut(s) 870, 966, 1086
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 291, 772
EcoT14I CCWWGG 2 cut(s) 435, 741
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 435, 741
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 5 cut(s) 439, 745, 820, 973, 1264
FatI CATG 5 cut(s) 435, 741, 816, 969, 1260
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 9 cut(s) 85, 217, 220, 336, 432, 705, 708, 1071, 1233
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 9 cut(s) 85, 217, 220, 336, 432, 705, 708, 1071, 1233
FspBI CTAG 1 cut(s) 1128
GlaI GCGC 2 cut(s) 13, 203
GluI GCNGC 9 cut(s) 85, 217, 220, 336, 432, 705, 708, 1071, 1233
GsaI CCCAGC 1 cut(s) 1209
GsuI CTGGAG 2 cut(s) 441, 500
HaeIII GGCC 2 cut(s) 146, 216
HapII CCGG 5 cut(s) 15, 143, 754, 1053, 1121
HgaI GACGC 1 cut(s) 895
HhaI GCGC 2 cut(s) 14, 204
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 5 cut(s) 439, 745, 820, 973, 1264
Hin6I GCGC 2 cut(s) 12, 202
HinP1I GCGC 2 cut(s) 12, 202
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 7 cut(s) 278, 539, 671, 820, 834, 1267, 1283
HpaII CCGG 5 cut(s) 15, 143, 754, 1053, 1121
HphI GGTGA 4 cut(s) 13, 509, 661, 933
Hpy166II GTNNAC 1 cut(s) 1252
Hpy188I TCNGA 3 cut(s) 55, 253, 1066
Hpy8I GTNNAC 1 cut(s) 1252
Hpy99I CGWCG 1 cut(s) 322
HpyCH4III ACNGT 3 cut(s) 115, 199, 1038
HpyCH4IV ACGT 3 cut(s) 449, 493, 632
HpyCH4V TGCA 9 cut(s) 4, 536, 707, 893, 937, 1114, 1139, 1145, 1216
HpyF10VI GCNNNNNNNGC 5 cut(s) 431, 704, 736, 1151, 1190
HpySE526I ACGT 3 cut(s) 449, 493, 632
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 5 cut(s) 439, 745, 820, 973, 1264
HspAI GCGC 2 cut(s) 12, 202
Kpn2I TCCGGA 1 cut(s) 753
KpnI GGTACC 1 cut(s) 1023
Ksp22I TGATCA 1 cut(s) 106
KspI CCGCGG 1 cut(s) 220
Kzo9I GATC 4 cut(s) 36, 55, 106, 383
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 6 cut(s) 75, 358, 422, 463, 775, 1043
Lsp1109I GCAGC 4 cut(s) 418, 691, 719, 1219
LweI GCATC 1 cut(s) 418
MaeI CTAG 1 cut(s) 1128
MaeII ACGT 3 cut(s) 449, 493, 632
MalI GATC 4 cut(s) 38, 57, 108, 385
MbiI CCGCTC 1 cut(s) 361
MboI GATC 4 cut(s) 36, 55, 106, 383
MboII GAAGA 8 cut(s) 338, 517, 578, 829, 1168, 1262, 1276, 1278
MfeI CAATTG 2 cut(s) 1047, 1109
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 8 cut(s) 313, 571, 613, 679, 714, 798, 1047, 1109
MlyI GAGTC 1 cut(s) 1292
MroI TCCGGA 1 cut(s) 753
MseI TTAA 1 cut(s) 1133
MspA1I CMGCKG 2 cut(s) 219, 710
MspI CCGG 5 cut(s) 15, 143, 754, 1053, 1121
MspR9I CCNGG 2 cut(s) 293, 774
MunI CAATTG 2 cut(s) 1047, 1109
Mva1269I GAATGC 2 cut(s) 937, 1000
MvaI CCWGG 2 cut(s) 293, 774
MvnI CGCG 2 cut(s) 12, 219
MwoI GCNNNNNNNGC 5 cut(s) 431, 704, 736, 1151, 1190
NcoI CCATGG 2 cut(s) 435, 741
NdeII GATC 4 cut(s) 36, 55, 106, 383
NlaIII CATG 5 cut(s) 439, 745, 820, 973, 1264
NlaIV GGNNCC 3 cut(s) 597, 882, 1021
NmeAIII GCCGAG 1 cut(s) 60
PaeR7I CTCGAG 1 cut(s) 464
PagI TCATGA 1 cut(s) 1260
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 2 cut(s) 937, 1000
PfeI GAWTC 6 cut(s) 278, 539, 671, 820, 834, 1267
PkrI GCNGC 9 cut(s) 86, 218, 221, 337, 433, 706, 709, 1072, 1234
PleI GAGTC 1 cut(s) 1291
PpsI GAGTC 1 cut(s) 1291
Ppu21I YACGTR 2 cut(s) 494, 633
Psp124BI GAGCTC 1 cut(s) 522
Psp1406I AACGTT 1 cut(s) 449
Psp6I CCWGG 2 cut(s) 291, 772
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 2 cut(s) 291, 772
PspN4I GGNNCC 3 cut(s) 597, 882, 1021
PstI CTGCAG 1 cut(s) 709
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 5 cut(s) 485, 492, 635, 1021, 1253
RsaNI GTAC 5 cut(s) 484, 491, 634, 1020, 1252
SacI GAGCTC 1 cut(s) 522
SacII CCGCGG 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 1133
SatI GCNGC 9 cut(s) 85, 217, 220, 336, 432, 705, 708, 1071, 1233
Sau3AI GATC 4 cut(s) 36, 55, 106, 383
SchI GAGTC 1 cut(s) 1292
ScrFI CCNGG 2 cut(s) 293, 774
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 705
Sfr274I CTCGAG 1 cut(s) 464
Sfr303I CCGCGG 1 cut(s) 220
SgrBI CCGCGG 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 464, 543
SmoI CTYRAG 2 cut(s) 464, 543
SnaBI TACGTA 1 cut(s) 633
Sse9I AATT 8 cut(s) 313, 571, 613, 679, 714, 798, 1047, 1109
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 1128
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 2 cut(s) 291, 772
StyI CCWWGG 2 cut(s) 435, 741
TaaI ACNGT 3 cut(s) 115, 199, 1038
TaiI ACGT 3 cut(s) 452, 496, 635
TaqI TCGA 3 cut(s) 317, 465, 964
TasI AATT 8 cut(s) 313, 571, 613, 679, 714, 798, 1047, 1109
TatI WGTACW 1 cut(s) 483
TauI GCSGC 5 cut(s) 87, 219, 222, 338, 1073
TfiI GAWTC 6 cut(s) 278, 539, 671, 820, 834, 1267
Tru1I TTAA 1 cut(s) 1133
Tru9I TTAA 1 cut(s) 1133
TseI GCWGC 4 cut(s) 431, 704, 707, 1232
TspDTI ATGAA 5 cut(s) 410, 986, 1249, 1277, 1278
XapI RAATTY 3 cut(s) 313, 571, 679
XcmI CCANNNNNNNNNTGG 1 cut(s) 874
XhoI CTCGAG 1 cut(s) 464
XspI CTAG 1 cut(s) 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.