pycom01g05840

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
5740586 .. 5743169
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05840.1

Sequence Viewer

Length: 1359 bp
ATGCTCCCACCCGACCACTCCAGCTTCAACCTCCTCACCCGTTTCATCAATTCCTACCCGTCCGATCCCGATCCCGATCCCGATCCGATCTCCCTCGGAGGACTGTTCCTGCACCCCAGCAACACCATCCCTCCTTCCTTCGTTTCTTTGATTTCTCACCGTACCCGTTTGCGTTCCGGTTCCGGTTCGGCCTGTTGTTTAAGGCGCCACTGCCACAAGACGCTGCGTTTTGAAGGTTTAAGACGAGGTGGTGGCGGCGGGTTGCTTTTGTCTGTGAGCTTGTCCATAAAGGGGAGTGAAAGGGATGGTGGTGAGGAAAGGTATGTTCGGGAATCAGGACAAGTCCTGGGGCAAAATGGGGATAAAAGCTTTTCGTCCTCGGAGGAGGAGGAGGAGGCCGCCATTGTGGCGGTGTTCGAGGGTGAGGGTGAGACTGCACGGAAGGGATCGGGTGCTATGAATACCACCAAGCATCTTTGGTCTGGAGCTGTTGCTGCTATGGTTTCAAGGACGTTTGTTGCTCCTCTTGAGAGGCTAAAGCTGGAATATATAGTTCGAGGTGAACAGAAGAACCTTTTTGAGCTCATCAGGACGATTGCAGCTTCTCAAGGGCTGAAGGGATTTTGGAGAGGAAATTTTGTCAATATTCTTCGCACGGCACCCTTTAAGGCTATCAATTTCTATGCTTACGATACTTACAGAAATCATCTGATGAAATTGTTTCGGAATGAGGAGTCCACAAATTACGAGAGGTTTCTTGCTGGTGCTGCGGCTGGAATTACGGCCACTTTGCTCTGCTTACCTATGGACACGCAGAACAAAGATGGTAGCACCTGGTGGAGAAACCTTGGGTGGTGTAATTGGTGCTTTCCGCCACATGTCATCCAAACTGAAGGGTTCTTTTCGCTTTACAAGGGTTTACTACCCTCGATTGTGAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTTTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGATGAAAAGGATCCAACACAAGAAACAAGAAGGTGATAAACTGAATGCTATGGAACAACTGGAGTTGGGTCCCGTTCGAACATTACTATATGGGGCAATTGCCGGTGCTTGTTCTGAAGCTGCTACATATCCATTTGAAGTTGTGAGGAGACACCTTCAGATGCAAGTTCGGGCAACTAAGTTAAGTGCTTTCGCAACTTGTGTGAAAATTGTTGAGCAAGGAGGTGTACCTGCTCTTTATGCAGGATTAACACCAAGCCTATTGCAGGTTTTACCGTCAGCTGCTATAAGTTATCTTGTATACGAGTTCATGAAGATTTTTCTCAGAGTAGAGTCGACGCAATAG

Protein Analysis

453

Amino Acids

50.0

Weight (kDa)

8.88

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 153 - 239 7.5e-20 Mitochondrial carrier protein
Mito_carr PF00153 246 - 333 2.7e-11 Mitochondrial carrier protein
Mito_carr PF00153 360 - 447 4.6e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1252, 1270
AccB1I GGYRCC 3 cut(s) 204, 658, 943
AccI GTMKAC 2 cut(s) 1314, 1349
AciI CCGC 6 cut(s) 255, 258, 399, 410, 770, 872
AclWI GGATC 7 cut(s) 59, 65, 71, 77, 454, 1018, 1031
AcoI YGGCCR 1 cut(s) 783
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 6 cut(s) 635, 912, 933, 1029, 1149, 1154
AcyI GRCGYC 1 cut(s) 205
AdeI CACNNNGTG 1 cut(s) 837
AfaI GTAC 2 cut(s) 163, 1242
AfiI CCNNNNNNNGG 2 cut(s) 291, 1279
AflIII ACRYGT 1 cut(s) 877
AgsI TTSAA 4 cut(s) 28, 233, 507, 1151
AjnI CCWGG 2 cut(s) 345, 833
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 2 cut(s) 425, 1156
AlwI GGATC 7 cut(s) 59, 65, 71, 77, 454, 1018, 1031
AoxI GGCC 3 cut(s) 189, 396, 783
ApeKI GCWGC 6 cut(s) 223, 494, 599, 767, 1133, 1295
ApoI RAATTY 1 cut(s) 634
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 1082
AsuHPI GGTGA 8 cut(s) 28, 149, 323, 434, 440, 572, 996, 1058
AsuII TTCGAA 1 cut(s) 1090
AvaII GGWCC 1 cut(s) 1082
BamHI GGATCC 1 cut(s) 1023
BanI GGYRCC 3 cut(s) 204, 658, 943
BanII GRGCYC 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 6 cut(s) 210, 481, 611, 754, 1120, 1282
BccI CCATC 3 cut(s) 134, 299, 818
BceAI ACGGC 2 cut(s) 672, 798
BciT130I CCWGG 2 cut(s) 347, 835
BcoDI GTCTC 2 cut(s) 425, 1156
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 2 cut(s) 1252, 1270
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 9 cut(s) 224, 256, 399, 495, 600, 768, 771, 1134, 1296
BlsI GCNGC 9 cut(s) 225, 257, 400, 496, 601, 769, 772, 1135, 1297
Bme1390I CCNGG 2 cut(s) 347, 835
Bme18I GGWCC 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 1082
BmiI GGNNCC 7 cut(s) 181, 206, 660, 945, 1025, 1083, 1084
BmrFI CCNGG 2 cut(s) 347, 835
BmsI GCATC 2 cut(s) 481, 1164
BpmI CTGGAG 3 cut(s) 4, 504, 1094
Bpu14I TTCGAA 1 cut(s) 1090
BpuEI CTTGAG 2 cut(s) 548, 591
BsaBI GATNNNNATC 3 cut(s) 69, 75, 81
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 4 cut(s) 94, 346, 378, 847
BsaWI WCCGGW 2 cut(s) 176, 182
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 1279
Bse118I RCCGGY 1 cut(s) 1115
Bse1I ACTGG 1 cut(s) 1077
Bse8I GATNNNNATC 3 cut(s) 69, 75, 81
BseBI CCWGG 2 cut(s) 347, 835
BseDI CCNNGG 4 cut(s) 94, 346, 378, 847
BseGI GGATG 4 cut(s) 126, 310, 882, 1020
BseJI GATNNNNATC 3 cut(s) 69, 75, 81
BseLI CCNNNNNNNGG 2 cut(s) 291, 1279
BseMII CTCAG 1 cut(s) 1351
BseNI ACTGG 1 cut(s) 1077
BseRI GAGGAG 8 cut(s) 23, 398, 401, 404, 407, 513, 746, 1174
BseXI GCAGC 6 cut(s) 210, 481, 611, 754, 1120, 1282
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 3 cut(s) 95, 420, 975
BshFI GGCC 3 cut(s) 191, 398, 785
BshNI GGYRCC 3 cut(s) 204, 658, 943
BsiHKAI GWGCWC 1 cut(s) 585
BsiSI CCGG 3 cut(s) 177, 183, 1116
BslFI GGGAC 1 cut(s) 1068
BslI CCNNNNNNNGG 2 cut(s) 291, 1279
BsmAI GTCTC 2 cut(s) 425, 1156
BsmFI GGGAC 1 cut(s) 1068
BsmI GAATGC 2 cut(s) 1000, 1063
BsnI GGCC 3 cut(s) 191, 398, 785
Bsp119I TTCGAA 1 cut(s) 1090
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
BspACI CCGC 6 cut(s) 255, 258, 399, 410, 770, 872
BspANI GGCC 3 cut(s) 191, 398, 785
BspCNI CTCAG 1 cut(s) 1350
BspHI TCATGA 1 cut(s) 1323
BspLI GGNNCC 7 cut(s) 181, 206, 660, 945, 1025, 1083, 1084
BspMI ACCTGC 2 cut(s) 1252, 1270
BspPI GGATC 7 cut(s) 59, 65, 71, 77, 454, 1018, 1031
BspT104I TTCGAA 1 cut(s) 1090
BspT107I GGYRCC 3 cut(s) 204, 658, 943
BsrFI RCCGGY 1 cut(s) 1115
BsrI ACTGG 1 cut(s) 1077
BssAI RCCGGY 1 cut(s) 1115
BssECI CCNNGG 4 cut(s) 94, 346, 378, 847
BssMI GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
BssNAI GTATAC 1 cut(s) 1315
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 847
Bst1107I GTATAC 1 cut(s) 1315
Bst2UI CCWGG 2 cut(s) 347, 835
Bst4CI ACNGT 3 cut(s) 105, 161, 1290
BstACI GRCGYC 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 1090
BstDEI CTNAG 2 cut(s) 1191, 1337
BstENI CCTNNNNNAGG 1 cut(s) 1277
BstF5I GGATG 4 cut(s) 126, 310, 882, 1020
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 7 cut(s) 67, 73, 79, 85, 90, 449, 1026
BstMAI GTCTC 2 cut(s) 425, 1156
BstMBI GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
BstMWI GCNNNNNNNGC 4 cut(s) 407, 494, 767, 1253
BstNI CCWGG 2 cut(s) 347, 835
BstNSI RCATGY 1 cut(s) 881
BstSCI CCNGG 2 cut(s) 345, 833
BstV1I GCAGC 6 cut(s) 210, 481, 611, 754, 1120, 1282
BstX2I RGATCY 1 cut(s) 1023
BstYI RGATCY 1 cut(s) 1023
BstZ17I GTATAC 1 cut(s) 1315
BsuRI GGCC 3 cut(s) 191, 398, 785
BtsCI GGATG 4 cut(s) 126, 310, 882, 1020
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 208
BveI ACCTGC 2 cut(s) 1252, 1270
CciI TCATGA 1 cut(s) 1323
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 1115
Cfr13I GGNCC 1 cut(s) 1082
CseI GACGC 1 cut(s) 229
CsiI ACCWGGT 1 cut(s) 833
Csp6I GTAC 2 cut(s) 162, 1241
CviAII CATG 3 cut(s) 878, 940, 1324
CviQI GTAC 2 cut(s) 162, 1241
DdeI CTNAG 2 cut(s) 1191, 1337
DinI GGCGCC 1 cut(s) 206
DpnI GATC 7 cut(s) 66, 72, 78, 84, 89, 448, 1025
DpnII GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
DraIII CACNNNGTG 1 cut(s) 837
EaeI YGGCCR 1 cut(s) 783
EciI GGCGGA 1 cut(s) 861
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 1082
Eco53kI GAGCTC 1 cut(s) 583
Eco57I CTGAAG 6 cut(s) 635, 912, 933, 1029, 1149, 1154
EcoICRI GAGCTC 1 cut(s) 583
EcoNI CCTNNNNNAGG 1 cut(s) 1277
EcoO109I RGGNCCY 1 cut(s) 1082
EcoRII CCWGG 2 cut(s) 345, 833
EcoT14I CCWWGG 1 cut(s) 847
EcoT38I GRGCYC 1 cut(s) 585
EgeI GGCGCC 1 cut(s) 206
EheI GGCGCC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 847
FaeI CATG 3 cut(s) 881, 943, 1327
FaqI GGGAC 1 cut(s) 1068
FatI CATG 3 cut(s) 877, 939, 1323
FauI CCCGC 1 cut(s) 251
FblI GTMKAC 2 cut(s) 1314, 1349
Fnu4HI GCNGC 9 cut(s) 224, 256, 399, 495, 600, 768, 771, 1134, 1296
FokI GGATG 4 cut(s) 113, 317, 869, 1027
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 9 cut(s) 224, 256, 399, 495, 600, 768, 771, 1134, 1296
GlaI GCGC 1 cut(s) 206
GluI GCNGC 9 cut(s) 224, 256, 399, 495, 600, 768, 771, 1134, 1296
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 3 cut(s) 4, 504, 1094
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 3 cut(s) 191, 398, 785
HapII CCGG 3 cut(s) 177, 183, 1116
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 3 cut(s) 881, 943, 1327
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HincII GTYRAC 1 cut(s) 1350
HindII GTYRAC 1 cut(s) 1350
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 3 cut(s) 332, 734, 1346
HpaII CCGG 3 cut(s) 177, 183, 1116
HphI GGTGA 8 cut(s) 28, 149, 323, 434, 440, 572, 996, 1058
Hpy166II GTNNAC 6 cut(s) 563, 738, 920, 1241, 1315, 1350
Hpy188I TCNGA 9 cut(s) 64, 87, 98, 382, 711, 726, 1129, 1173, 1340
Hpy188III TCNNGA 9 cut(s) 68, 74, 80, 329, 336, 483, 527, 589, 1324
Hpy8I GTNNAC 6 cut(s) 563, 738, 920, 1241, 1315, 1350
Hpy99I CGWCG 1 cut(s) 1354
HpyCH4III ACNGT 3 cut(s) 105, 161, 1290
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 8 cut(s) 112, 437, 599, 956, 1000, 1177, 1256, 1279
HpyF10VI GCNNNNNNNGC 4 cut(s) 407, 494, 767, 1253
HpyF3I CTNAG 2 cut(s) 1191, 1337
HpySE526I ACGT 1 cut(s) 512
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 3 cut(s) 881, 943, 1327
HspAI GCGC 1 cut(s) 205
KasI GGCGCC 1 cut(s) 204
KflI GGGWCCC 1 cut(s) 1082
Kzo9I GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
LmnI GCTCC 3 cut(s) 9, 485, 526
Lsp1109I GCAGC 6 cut(s) 210, 481, 611, 754, 1120, 1282
LweI GCATC 2 cut(s) 481, 1164
MabI ACCWGGT 1 cut(s) 833
MaeII ACGT 1 cut(s) 512
MalI GATC 7 cut(s) 66, 72, 78, 84, 89, 448, 1025
MboI GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
MboII GAAGA 3 cut(s) 580, 641, 1339
MfeI CAATTG 1 cut(s) 1110
MflI RGATCY 1 cut(s) 1023
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 9 cut(s) 49, 634, 676, 716, 742, 777, 859, 1110, 1221
Mly113I GGCGCC 1 cut(s) 205
MlyI GAGTC 2 cut(s) 743, 1355
MmeI TCCRAC 1 cut(s) 1051
MseI TTAA 5 cut(s) 200, 239, 666, 1196, 1262
MspA1I CMGCKG 1 cut(s) 1295
MspI CCGG 3 cut(s) 177, 183, 1116
MspR9I CCNGG 2 cut(s) 347, 835
MunI CAATTG 1 cut(s) 1110
Mva1269I GAATGC 2 cut(s) 1000, 1063
MvaI CCWGG 2 cut(s) 347, 835
MwoI GCNNNNNNNGC 4 cut(s) 407, 494, 767, 1253
NarI GGCGCC 1 cut(s) 205
NdeII GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
NlaIII CATG 3 cut(s) 881, 943, 1327
NlaIV GGNNCC 7 cut(s) 181, 206, 660, 945, 1025, 1083, 1084
NspI RCATGY 1 cut(s) 881
NspV TTCGAA 1 cut(s) 1090
PagI TCATGA 1 cut(s) 1323
PciI ACATGT 1 cut(s) 877
PctI GAATGC 2 cut(s) 1000, 1063
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 9 cut(s) 225, 257, 400, 496, 601, 769, 772, 1135, 1297
PleI GAGTC 2 cut(s) 742, 1354
PluTI GGCGCC 1 cut(s) 208
PpsI GAGTC 2 cut(s) 742, 1354
PpuMI RGGWCCY 1 cut(s) 1082
PscI ACATGT 1 cut(s) 877
Psp124BI GAGCTC 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 1082
Psp6I CCWGG 2 cut(s) 345, 833
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 345, 833
PspN4I GGNNCC 7 cut(s) 181, 206, 660, 945, 1025, 1083, 1084
PspPI GGNCC 1 cut(s) 1082
PspPPI RGGWCCY 1 cut(s) 1082
PsuI RGATCY 1 cut(s) 1023
PvuII CAGCTG 1 cut(s) 1295
RsaI GTAC 2 cut(s) 163, 1242
RsaNI GTAC 2 cut(s) 162, 1241
SacI GAGCTC 1 cut(s) 585
SalI GTCGAC 1 cut(s) 1348
SaqAI TTAA 5 cut(s) 200, 239, 666, 1196, 1262
SatI GCNGC 9 cut(s) 224, 256, 399, 495, 600, 768, 771, 1134, 1296
Sau3AI GATC 7 cut(s) 64, 70, 76, 82, 87, 446, 1023
Sau96I GGNCC 1 cut(s) 1082
SchI GAGTC 2 cut(s) 743, 1355
ScrFI CCNGG 2 cut(s) 347, 835
SduI GDGCHC 1 cut(s) 585
SexAI ACCWGGT 1 cut(s) 833
SfaNI GCATC 2 cut(s) 481, 1164
SfoI GGCGCC 1 cut(s) 206
SfuI TTCGAA 1 cut(s) 1090
SinI GGWCC 1 cut(s) 1082
SmlI CTYRAG 2 cut(s) 527, 606
SmoI CTYRAG 2 cut(s) 527, 606
Sse9I AATT 9 cut(s) 49, 634, 676, 716, 742, 777, 859, 1110, 1221
SsiI CCGC 6 cut(s) 255, 258, 399, 410, 770, 872
SspDI GGCGCC 1 cut(s) 204
SspI AATATT 1 cut(s) 646
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 2 cut(s) 345, 833
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 3 cut(s) 105, 161, 1290
TaiI ACGT 1 cut(s) 515
TaqI TCGA 5 cut(s) 417, 556, 929, 1090, 1349
TasI AATT 9 cut(s) 49, 634, 676, 716, 742, 777, 859, 1110, 1221
TauI GCSGC 3 cut(s) 258, 401, 773
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 5 cut(s) 200, 239, 666, 1196, 1262
Tru9I TTAA 5 cut(s) 200, 239, 666, 1196, 1262
TscAI CASTG 1 cut(s) 215
TseI GCWGC 6 cut(s) 223, 494, 599, 767, 1133, 1295
TspDTI ATGAA 6 cut(s) 34, 473, 728, 1031, 1312, 1340
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 1082
XagI CCTNNNNNAGG 1 cut(s) 1277
XapI RAATTY 1 cut(s) 634
XceI RCATGY 1 cut(s) 881
XmiI GTMKAC 2 cut(s) 1314, 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.