MD15G1318200.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
32847476 .. 32850407
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1318200.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGCTCCCACCCGACCACTCCAGCTTCAACCTCCTCACCCATTTCATCAATATCCACCCGTCCGATCGCGGTCCCGATTCTGATCCCATCTTCCTCGGAGGCCTGTTCCTGCACCCGAGTAACACCGTCCCTCCTTCCTTCCTTTCCTTGATTTCACCCAATGTCCGTTTGCGTTCCCGTTCGGGATGTTGTTTAAGGTGCCGCGGCCGCAGGACGCTGCGTTTTGAAGGTTTGAAGGGAAGAAGCGGCGGTGGCGGCACGCCGTTGTTTTTGTCTGTGAGTTTGTCGATAAGGGGAAGTGAAGGAGATGGTGGTGAGGAAGAGTATGTTCCGGAATCAGGACAAGTCCTGGGGCAAAATGGGGATAAAAGCTTTTCATCGGAGGAGGCCGCCGTCGTGGCGGTGTTCGAGAAGGGTGAGGCTGAGACTGCACGGAAGGGATCGGGTGCTATGAATACCACCAAGCATCTTTGGTCTGGAGCTGTTGCTGCTATGGTTTCAAGGACGTTCGTTGCTCCTCTTGAGAGGCTAAAGCTGGAATATGTAGTTCGTGGCGAACAGAAGAACCTTATTGAACTCATCAGGACGATTGCAGCTTCTCAAGGGCTGAAGGGATTTTGGAAAGGAAATTTTGTCAATATTCTTCGCACGGCACCCTTTAAGGCTATCAATTTCTGTGCTTATGATACTTACAGAAATCATCTGAGGAAACTGTCTCGGAGTGAGGAGTCCACAAATTACGAGAGGTTTCTTGCTGGTGCTGCGGCTGGAATTACAGCTACCTTGCTCTGCTTACCTATGGACACTATCAGGACAAAGATGGTAGCACCTGGTGGAGAAGCCTTGGGTGGTGTAATCGGTGCTTTCCGCCACATGATCCAAACTGAAGGGTTCTTTTCTCTTTACAAGGGTTTACTACCTTCGATTGTGAGCATGGCACCTTCAGGTGCAGTTTTCTACGGTGTTTATGATATACTGAAATCGGCTTATCTTCATTCACCTGAAGGGAGGAAAAGGATCCAACATATGAAACAAGAAGGTGATAAATTGAATGCTTTGGAACAACTGGAGTTGGGTCCCGTTAGAACATTACTATATGGGGCAATCGCCGGTGCTTGTTCTGAAGCTGCTACATATCCATTTGAAGTTGTGAGGAGACACCTTCAAATGCAAGTTCGAGCAACTAAGTTAAGCGCGCTTGCAACTTGTGTTAAAATTGTCGAGCAAGGAGGTGTGCCTGCTCTTTATGCAGGATTAACACCAAGCCTATTGCAGGTTTTACCATCTGCTGCCATAAGTTATCTTGTATACGAGTTCATGAAGATTTTTCTCAAAGTCGAGTCTACATAA

Protein Analysis

450

Amino Acids

48.8

Weight (kDa)

9.26

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 151 - 237 1.2e-19 Mitochondrial carrier protein
Mito_carr PF00153 244 - 331 1.6e-20 Mitochondrial carrier protein
Mito_carr PF00153 358 - 445 6.6e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1264
AccB1I GGYRCC 3 cut(s) 198, 652, 937
AccI GTMKAC 2 cut(s) 1308, 1343
AccII CGCG 3 cut(s) 69, 204, 1196
AccIII TCCGGA 1 cut(s) 331
AclWI GGATC 5 cut(s) 77, 448, 871, 1012, 1025
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 5 cut(s) 629, 906, 927, 1023, 1143
AdeI CACNNNGTG 1 cut(s) 833
AfiI CCNNNNNNNGG 2 cut(s) 338, 1273
AgsI TTSAA 8 cut(s) 28, 227, 235, 501, 575, 1051, 1145, 1166
AjnI CCWGG 2 cut(s) 348, 829
AluBI AGCT 7 cut(s) 24, 372, 482, 535, 596, 779, 1127
AluI AGCT 7 cut(s) 24, 372, 482, 535, 596, 779, 1127
Alw26I GTCTC 3 cut(s) 419, 720, 1150
AlwI GGATC 5 cut(s) 77, 448, 871, 1012, 1025
Ama87I CYCGRG 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 3 cut(s) 100, 205, 387
ApeKI GCWGC 6 cut(s) 217, 488, 593, 761, 1127, 1289
ApoI RAATTY 1 cut(s) 628
AspLEI GCGC 2 cut(s) 1196, 1198
AspS9I GGNCC 2 cut(s) 71, 1076
AsuHPI GGTGA 6 cut(s) 28, 147, 326, 428, 990, 1052
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 2 cut(s) 71, 1076
BamHI GGATCC 1 cut(s) 1017
BanI GGYRCC 3 cut(s) 198, 652, 937
BbvI GCAGC 6 cut(s) 204, 475, 605, 748, 1114, 1276
BccI CCATC 4 cut(s) 95, 302, 814, 1291
BceAI ACGGC 3 cut(s) 247, 377, 666
BciT130I CCWGG 2 cut(s) 350, 831
BcoDI GTCTC 3 cut(s) 419, 720, 1150
BfuAI ACCTGC 1 cut(s) 1264
BglI GCCNNNNNGGC 1 cut(s) 398
Bme1390I CCNGG 2 cut(s) 350, 831
Bme18I GGWCC 2 cut(s) 71, 1076
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 71, 1076
BmiI GGNNCC 7 cut(s) 73, 200, 654, 939, 1019, 1077, 1078
BmrFI CCNGG 2 cut(s) 350, 831
BmsI GCATC 1 cut(s) 475
BpmI CTGGAG 3 cut(s) 4, 498, 1088
BpuEI CTTGAG 2 cut(s) 542, 585
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 4 cut(s) 94, 202, 349, 843
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 1273
Bse118I RCCGGY 1 cut(s) 1109
Bse1I ACTGG 1 cut(s) 1071
Bse8I GATNNNNATC 1 cut(s) 81
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 2 cut(s) 350, 831
BseDI CCNNGG 4 cut(s) 94, 202, 349, 843
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 338, 1273
BseMII CTCAG 2 cut(s) 414, 695
BseNI ACTGG 1 cut(s) 1071
BsePI GCGCGC 1 cut(s) 1194
BseRI GAGGAG 5 cut(s) 23, 398, 507, 740, 1168
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 6 cut(s) 204, 475, 605, 748, 1114, 1276
BsgI GTGCAG 3 cut(s) 95, 414, 969
Bsh1236I CGCG 3 cut(s) 69, 204, 1196
Bsh1285I CGRYCG 2 cut(s) 67, 208
BshFI GGCC 3 cut(s) 102, 207, 389
BshNI GGYRCC 3 cut(s) 198, 652, 937
BsiEI CGRYCG 2 cut(s) 67, 208
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 332, 1110
BslFI GGGAC 3 cut(s) 57, 113, 1062
BslI CCNNNNNNNGG 2 cut(s) 338, 1273
BsmAI GTCTC 3 cut(s) 419, 720, 1150
BsmFI GGGAC 3 cut(s) 57, 113, 1062
BsmI GAATGC 1 cut(s) 1057
BsnI GGCC 3 cut(s) 102, 207, 389
BsoBI CYCGRG 1 cut(s) 115
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 5 cut(s) 64, 82, 440, 876, 1017
BspANI GGCC 3 cut(s) 102, 207, 389
BspCNI CTCAG 2 cut(s) 415, 696
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 3 cut(s) 69, 204, 1196
BspHI TCATGA 1 cut(s) 1317
BspLI GGNNCC 7 cut(s) 73, 200, 654, 939, 1019, 1077, 1078
BspMI ACCTGC 1 cut(s) 1264
BspPI GGATC 5 cut(s) 77, 448, 871, 1012, 1025
BspT107I GGYRCC 3 cut(s) 198, 652, 937
BsrFI RCCGGY 1 cut(s) 1109
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 1 cut(s) 1109
BssECI CCNNGG 4 cut(s) 94, 202, 349, 843
BssHII GCGCGC 1 cut(s) 1194
BssMI GATC 5 cut(s) 64, 82, 440, 876, 1017
BssNAI GTATAC 1 cut(s) 1309
BssT1I CCWWGG 1 cut(s) 843
Bst1107I GTATAC 1 cut(s) 1309
Bst2UI CCWGG 2 cut(s) 350, 831
Bst4CI ACNGT 3 cut(s) 127, 714, 962
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 260, 1196, 1200, 1239
BstDEI CTNAG 3 cut(s) 423, 704, 1185
BstDSI CCRYGG 1 cut(s) 202
BstENI CCTNNNNNAGG 1 cut(s) 1271
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 3 cut(s) 69, 204, 1196
BstHHI GCGC 2 cut(s) 1196, 1198
BstKTI GATC 5 cut(s) 67, 85, 443, 879, 1020
BstMAI GTCTC 3 cut(s) 419, 720, 1150
BstMBI GATC 5 cut(s) 64, 82, 440, 876, 1017
BstMCI CGRYCG 2 cut(s) 67, 208
BstMWI GCNNNNNNNGC 8 cut(s) 207, 252, 255, 398, 428, 488, 761, 1247
BstNI CCWGG 2 cut(s) 350, 831
BstSCI CCNGG 2 cut(s) 348, 829
BstUI CGCG 3 cut(s) 69, 204, 1196
BstV1I GCAGC 6 cut(s) 204, 475, 605, 748, 1114, 1276
BstX2I RGATCY 1 cut(s) 1017
BstYI RGATCY 1 cut(s) 1017
BstZ17I GTATAC 1 cut(s) 1309
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 3 cut(s) 102, 207, 389
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 191
BveI ACCTGC 1 cut(s) 1264
Cac8I GCNNGC 4 cut(s) 260, 1196, 1200, 1239
CciI TCATGA 1 cut(s) 1317
CciNI GCGGCCGC 1 cut(s) 205
CfoI GCGC 2 cut(s) 1196, 1198
Cfr10I RCCGGY 1 cut(s) 1109
Cfr13I GGNCC 2 cut(s) 71, 1076
Cfr42I CCGCGG 1 cut(s) 205
CseI GACGC 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 829
CviAII CATG 3 cut(s) 874, 934, 1318
DdeI CTNAG 3 cut(s) 423, 704, 1185
DpnI GATC 5 cut(s) 66, 84, 442, 878, 1019
DpnII GATC 5 cut(s) 64, 82, 440, 876, 1017
DraIII CACNNNGTG 1 cut(s) 833
EaeI YGGCCR 1 cut(s) 205
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EciI GGCGGA 1 cut(s) 857
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 843
Eco147I AGGCCT 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 71, 1076
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 5 cut(s) 629, 906, 927, 1023, 1143
Eco88I CYCGRG 1 cut(s) 115
EcoNI CCTNNNNNAGG 1 cut(s) 1271
EcoO109I RGGNCCY 1 cut(s) 1076
EcoRII CCWGG 2 cut(s) 348, 829
EcoT14I CCWWGG 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 843
FaeI CATG 3 cut(s) 877, 937, 1321
FaqI GGGAC 3 cut(s) 57, 113, 1062
FatI CATG 3 cut(s) 873, 933, 1317
FauNDI CATATG 1 cut(s) 1026
FblI GTMKAC 2 cut(s) 1308, 1343
FokI GGATG 1 cut(s) 198
GlaI GCGC 2 cut(s) 1195, 1197
GsuI CTGGAG 3 cut(s) 4, 498, 1088
HaeIII GGCC 3 cut(s) 102, 207, 389
HapII CCGG 2 cut(s) 332, 1110
HgaI GACGC 1 cut(s) 223
HhaI GCGC 2 cut(s) 1196, 1198
Hin1II CATG 3 cut(s) 877, 937, 1321
Hin6I GCGC 2 cut(s) 1194, 1196
HinP1I GCGC 2 cut(s) 1194, 1196
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 4 cut(s) 77, 335, 728, 1340
HpaII CCGG 2 cut(s) 332, 1110
HphI GGTGA 6 cut(s) 28, 147, 326, 428, 990, 1052
Hpy166II GTNNAC 4 cut(s) 732, 914, 1309, 1344
Hpy188I TCNGA 7 cut(s) 64, 82, 98, 382, 705, 720, 1123
Hpy8I GTNNAC 4 cut(s) 732, 914, 1309, 1344
Hpy99I CGWCG 1 cut(s) 398
HpyCH4III ACNGT 3 cut(s) 127, 714, 962
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 8 cut(s) 112, 431, 593, 950, 1171, 1202, 1250, 1273
HpyF10VI GCNNNNNNNGC 8 cut(s) 207, 252, 255, 398, 428, 488, 761, 1247
HpyF3I CTNAG 3 cut(s) 423, 704, 1185
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 3 cut(s) 877, 937, 1321
HspAI GCGC 2 cut(s) 1194, 1196
KflI GGGWCCC 1 cut(s) 1076
Kpn2I TCCGGA 1 cut(s) 331
KspI CCGCGG 1 cut(s) 205
Kzo9I GATC 5 cut(s) 64, 82, 440, 876, 1017
LmnI GCTCC 3 cut(s) 9, 479, 520
Lsp1109I GCAGC 6 cut(s) 204, 475, 605, 748, 1114, 1276
LweI GCATC 1 cut(s) 475
MabI ACCWGGT 1 cut(s) 829
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 1 cut(s) 119
MalI GATC 5 cut(s) 66, 84, 442, 878, 1019
MboI GATC 5 cut(s) 64, 82, 440, 876, 1017
MboII GAAGA 7 cut(s) 82, 252, 332, 574, 635, 983, 1333
MflI RGATCY 1 cut(s) 1017
MluCI AATT 6 cut(s) 628, 670, 736, 771, 1046, 1215
MlyI GAGTC 2 cut(s) 737, 1349
MmeI TCCRAC 1 cut(s) 1045
MroI TCCGGA 1 cut(s) 331
MseI TTAA 5 cut(s) 194, 660, 1190, 1212, 1256
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 2 cut(s) 332, 1110
MspR9I CCNGG 2 cut(s) 350, 831
Mva1269I GAATGC 1 cut(s) 1057
MvaI CCWGG 2 cut(s) 350, 831
MvnI CGCG 3 cut(s) 69, 204, 1196
MwoI GCNNNNNNNGC 8 cut(s) 207, 252, 255, 398, 428, 488, 761, 1247
NdeI CATATG 1 cut(s) 1026
NdeII GATC 5 cut(s) 64, 82, 440, 876, 1017
NlaIII CATG 3 cut(s) 877, 937, 1321
NlaIV GGNNCC 7 cut(s) 73, 200, 654, 939, 1019, 1077, 1078
NotI GCGGCCGC 1 cut(s) 205
PagI TCATGA 1 cut(s) 1317
PauI GCGCGC 1 cut(s) 1194
PceI AGGCCT 1 cut(s) 102
PctI GAATGC 1 cut(s) 1057
PfeI GAWTC 2 cut(s) 77, 335
Ple19I CGATCG 1 cut(s) 67
PleI GAGTC 2 cut(s) 736, 1348
PpsI GAGTC 2 cut(s) 736, 1348
PpuMI RGGWCCY 1 cut(s) 1076
Psp5II RGGWCCY 1 cut(s) 1076
Psp6I CCWGG 2 cut(s) 348, 829
PspGI CCWGG 2 cut(s) 348, 829
PspN4I GGNNCC 7 cut(s) 73, 200, 654, 939, 1019, 1077, 1078
PspPI GGNCC 2 cut(s) 71, 1076
PspPPI RGGWCCY 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 1017
PteI GCGCGC 1 cut(s) 1194
PvuI CGATCG 1 cut(s) 67
SacII CCGCGG 1 cut(s) 205
SaqAI TTAA 5 cut(s) 194, 660, 1190, 1212, 1256
Sau3AI GATC 5 cut(s) 64, 82, 440, 876, 1017
Sau96I GGNCC 2 cut(s) 71, 1076
SchI GAGTC 2 cut(s) 737, 1349
ScrFI CCNGG 2 cut(s) 350, 831
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 1 cut(s) 475
Sfr303I CCGCGG 1 cut(s) 205
SgrAI CRCCGGYG 1 cut(s) 1109
SgrBI CCGCGG 1 cut(s) 205
SinI GGWCC 2 cut(s) 71, 1076
SmlI CTYRAG 2 cut(s) 521, 600
SmoI CTYRAG 2 cut(s) 521, 600
Sse9I AATT 6 cut(s) 628, 670, 736, 771, 1046, 1215
SseBI AGGCCT 1 cut(s) 102
SspI AATATT 1 cut(s) 640
StuI AGGCCT 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 348, 829
StyI CCWWGG 1 cut(s) 843
TaaI ACNGT 3 cut(s) 127, 714, 962
TaiI ACGT 1 cut(s) 509
TaqI TCGA 6 cut(s) 287, 408, 923, 1177, 1221, 1338
TasI AATT 6 cut(s) 628, 670, 736, 771, 1046, 1215
TauI GCSGC 7 cut(s) 204, 207, 210, 249, 258, 392, 767
TfiI GAWTC 2 cut(s) 77, 335
Tru1I TTAA 5 cut(s) 194, 660, 1190, 1212, 1256
Tru9I TTAA 5 cut(s) 194, 660, 1190, 1212, 1256
TseI GCWGC 6 cut(s) 217, 488, 593, 761, 1127, 1289
TspDTI ATGAA 7 cut(s) 34, 366, 467, 983, 1043, 1306, 1334
TspGWI ACGGA 2 cut(s) 155, 448
VpaK11BI GGWCC 2 cut(s) 71, 1076
XagI CCTNNNNNAGG 1 cut(s) 1271
XapI RAATTY 1 cut(s) 628
XmiI GTMKAC 2 cut(s) 1308, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.