MD01G1030900.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
10879141 .. 10884207
5067 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1030900.v1.1.491

Sequence Viewer

Length: 1341 bp
ATGCTCCCACCCGACCACTCCAGCTTCAACCTCCTCACCCGTTTCATCAATTCCTACCCGTCCGATCCCGATCCGATCTCCCTCGGAGGACTGTTCCTGCACCCCAGCAACACCATCCCTCCGTCCTTCCTTTCTTTGATTTCTCACCGTACCCGTTTGCGTTCCGGTTCGGGTTCGGCCTGTTGTTTAAGGCGCCACTGCCACAAGACACTGCGTTTTGAAGGTTTAAGAGGAAGAGGTGGTGGCGGCGGGTTGTTTTTGTCTGTAAGCTTGTCGATAAGGGGGAGTGAAGGGGATGGTGGTGAGGAAAGGTATGTTCGGGAATCAGGACAAGTCCTGGGGCAAAATGGGGATAAAAGCTTTTCGTCCTCGGAGGAGGAGGCCGCCATTGTGGCGGTGTTCGAGGGTGAGGGTGAGACTGCACGGAAGGGATCGGGTGCTATGAACACCACCAAGCATCTTTGGTCTGGAGCTGTTGCTGCTATGGTTTCAAGGACGTTTGTTGCTCCTCTTGAGAGGCTAAAGCTGGAATATATAGTTCGAGGTGAACAGAAGAACCTTTTTGAGCTCATCAGGACGATTGCAGCTTCTCAAGGGCTGAAGGGATTTTGGAAAGGAAATTTTGTCAATATTCTTCGCACGGCACCCTTTAAGGCTATCAATTTCTACGCTTACGATACTTACAGAAATCATCTGATGAAATTGTCTCGGAATGAGGAGTCCACAAATTACGAGAGGTTTCTTGCTGGTGCTGCGGCTGGAATTACAGCCACTTTGCTCTGCTTACCTATGGACACGATCAGGACAAAGATGGTAGCACCTGGTGGAGAAGCCTTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATCCAAACTGAAGGGTTCTTTTCGCTTTACAAGGGTTTACTACCCTCGATTGTGAGCATGGCACCTTCAGGTGCAGTTTTCTACGGTGTTTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGAGGAAAAGGATCCAACACATGAAACAAGAAGGTGATAAACTGAATGCTATGGAACAACTGGAGTTGGATCCCGTTCGAACATTACTATATGGGGCAATTGCCGGTGCTTGTTCTGAAGCTGCTACATATCCATTTGAAGTTGTGAGGAGACACCTTCAAATGCAAGTTCGGGCAACTAAGTTAAGTGCTTTTGCAACTTGTGTGAAAATTGTTGAGCAAGGAGGTGTACCTGCTCTTTATGCAGGATTAACACCAAGCCTATTGCAGGTTTTACCGTCAGCTGCTATAAGTTATCTTGTATACGAGTTCATGAAGATTTTTCTCAGAGTAGAGTTGACGTAA

Protein Analysis

447

Amino Acids

48.78

Weight (kDa)

9.24

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 148 - 234 6.6e-20 Mitochondrial carrier protein
Mito_carr PF00153 241 - 328 1.6e-20 Mitochondrial carrier protein
Mito_carr PF00153 355 - 441 5.2e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1237, 1255
AccB1I GGYRCC 3 cut(s) 192, 643, 928
AccI GTMKAC 1 cut(s) 1299
AciI CCGC 6 cut(s) 246, 249, 384, 395, 755, 859
AclWI GGATC 8 cut(s) 59, 65, 439, 862, 1003, 1016, 1061, 1074
AcsI RAATTY 1 cut(s) 619
AcuI CTGAAG 5 cut(s) 620, 897, 918, 1014, 1134
AcyI GRCGYC 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 824
AfaI GTAC 2 cut(s) 151, 1227
AfiI CCNNNNNNNGG 1 cut(s) 1264
AgsI TTSAA 5 cut(s) 28, 221, 492, 1136, 1157
AjnI CCWGG 2 cut(s) 336, 820
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 3 cut(s) 410, 711, 1141
AlwI GGATC 8 cut(s) 59, 65, 439, 862, 1003, 1016, 1061, 1074
AoxI GGCC 2 cut(s) 177, 381
ApeKI GCWGC 5 cut(s) 479, 584, 752, 1118, 1280
ApoI RAATTY 1 cut(s) 619
AspLEI GCGC 1 cut(s) 195
AsuHPI GGTGA 8 cut(s) 28, 137, 314, 419, 425, 557, 981, 1043
AsuII TTCGAA 1 cut(s) 1075
BamHI GGATCC 2 cut(s) 1008, 1066
BanI GGYRCC 3 cut(s) 192, 643, 928
BanII GRGCYC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 5 cut(s) 466, 596, 739, 1105, 1267
BccI CCATC 3 cut(s) 122, 290, 805
BceAI ACGGC 1 cut(s) 657
BciT130I CCWGG 2 cut(s) 338, 822
BcoDI GTCTC 3 cut(s) 410, 711, 1141
BfoI RGCGCY 1 cut(s) 196
BfuAI ACCTGC 2 cut(s) 1237, 1255
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 8 cut(s) 247, 384, 480, 585, 753, 756, 1119, 1281
BlsI GCNGC 8 cut(s) 248, 385, 481, 586, 754, 757, 1120, 1282
Bme1390I CCNGG 2 cut(s) 338, 822
BmiI GGNNCC 5 cut(s) 194, 645, 930, 1010, 1068
BmrFI CCNGG 2 cut(s) 338, 822
BmsI GCATC 1 cut(s) 466
BpmI CTGGAG 3 cut(s) 4, 489, 1079
Bpu14I TTCGAA 1 cut(s) 1075
BpuEI CTTGAG 2 cut(s) 533, 576
BsaBI GATNNNNATC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 4 cut(s) 82, 337, 369, 834
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 1264
Bse118I RCCGGY 1 cut(s) 1100
Bse1I ACTGG 1 cut(s) 1062
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 2 cut(s) 338, 822
BseDI CCNNGG 4 cut(s) 82, 337, 369, 834
BseGI GGATG 2 cut(s) 114, 301
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 1264
BseMII CTCAG 1 cut(s) 1336
BseNI ACTGG 1 cut(s) 1062
BseRI GAGGAG 6 cut(s) 23, 389, 392, 498, 731, 1159
BseXI GCAGC 5 cut(s) 466, 596, 739, 1105, 1267
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 3 cut(s) 83, 405, 960
BshFI GGCC 2 cut(s) 179, 383
BshNI GGYRCC 3 cut(s) 192, 643, 928
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 2 cut(s) 165, 1101
BslI CCNNNNNNNGG 1 cut(s) 1264
BsmAI GTCTC 3 cut(s) 410, 711, 1141
BsmI GAATGC 2 cut(s) 985, 1048
BsnI GGCC 2 cut(s) 179, 383
Bsp119I TTCGAA 1 cut(s) 1075
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
BspACI CCGC 6 cut(s) 246, 249, 384, 395, 755, 859
BspANI GGCC 2 cut(s) 179, 383
BspCNI CTCAG 1 cut(s) 1335
BspHI TCATGA 1 cut(s) 1308
BspLI GGNNCC 5 cut(s) 194, 645, 930, 1010, 1068
BspMI ACCTGC 2 cut(s) 1237, 1255
BspPI GGATC 8 cut(s) 59, 65, 439, 862, 1003, 1016, 1061, 1074
BspT104I TTCGAA 1 cut(s) 1075
BspT107I GGYRCC 3 cut(s) 192, 643, 928
BsrFI RCCGGY 1 cut(s) 1100
BsrI ACTGG 1 cut(s) 1062
BssAI RCCGGY 1 cut(s) 1100
BssECI CCNNGG 4 cut(s) 82, 337, 369, 834
BssMI GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
BssNAI GTATAC 1 cut(s) 1300
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 834
Bst1107I GTATAC 1 cut(s) 1300
Bst2UI CCWGG 2 cut(s) 338, 822
Bst4CI ACNGT 4 cut(s) 93, 149, 953, 1275
Bst6I CTCTTC 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 1075
BstDEI CTNAG 2 cut(s) 1176, 1322
BstENI CCTNNNNNAGG 1 cut(s) 1262
BstF5I GGATG 2 cut(s) 114, 301
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 8 cut(s) 67, 73, 78, 434, 801, 870, 1011, 1069
BstMAI GTCTC 3 cut(s) 410, 711, 1141
BstMBI GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
BstMWI GCNNNNNNNGC 4 cut(s) 392, 479, 752, 1238
BstNI CCWGG 2 cut(s) 338, 822
BstSCI CCNGG 2 cut(s) 336, 820
BstV1I GCAGC 5 cut(s) 466, 596, 739, 1105, 1267
BstX2I RGATCY 2 cut(s) 1008, 1066
BstYI RGATCY 2 cut(s) 1008, 1066
BstZ17I GTATAC 1 cut(s) 1300
BsuRI GGCC 2 cut(s) 179, 383
BtsCI GGATG 2 cut(s) 114, 301
BtsI GCAGTG 2 cut(s) 196, 209
BtsIMutI CAGTG 2 cut(s) 196, 209
BveI ACCTGC 2 cut(s) 1237, 1255
CciI TCATGA 1 cut(s) 1308
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 1100
CsiI ACCWGGT 1 cut(s) 820
Csp6I GTAC 2 cut(s) 150, 1226
CviAII CATG 4 cut(s) 865, 925, 1018, 1309
CviQI GTAC 2 cut(s) 150, 1226
DdeI CTNAG 2 cut(s) 1176, 1322
DinI GGCGCC 1 cut(s) 194
DpnI GATC 8 cut(s) 66, 72, 77, 433, 800, 869, 1010, 1068
DpnII GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
DraIII CACNNNGTG 1 cut(s) 824
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
EciI GGCGGA 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 834
Eco24I GRGCYC 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 5 cut(s) 620, 897, 918, 1014, 1134
EcoICRI GAGCTC 1 cut(s) 568
EcoNI CCTNNNNNAGG 1 cut(s) 1262
EcoRII CCWGG 2 cut(s) 336, 820
EcoT14I CCWWGG 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 570
EgeI GGCGCC 1 cut(s) 194
EheI GGCGCC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 4 cut(s) 868, 928, 1021, 1312
FatI CATG 4 cut(s) 864, 924, 1017, 1308
FauI CCCGC 1 cut(s) 242
FblI GTMKAC 1 cut(s) 1299
Fnu4HI GCNGC 8 cut(s) 247, 384, 480, 585, 753, 756, 1119, 1281
FokI GGATG 2 cut(s) 101, 308
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 8 cut(s) 247, 384, 480, 585, 753, 756, 1119, 1281
GlaI GCGC 1 cut(s) 194
GluI GCNGC 8 cut(s) 247, 384, 480, 585, 753, 756, 1119, 1281
GsaI CCCAGC 1 cut(s) 108
GsuI CTGGAG 3 cut(s) 4, 489, 1079
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 2 cut(s) 179, 383
HapII CCGG 2 cut(s) 165, 1101
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 4 cut(s) 868, 928, 1021, 1312
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 1335
HindII GTYRAC 1 cut(s) 1335
HindIII AAGCTT 2 cut(s) 268, 358
HinfI GANTC 2 cut(s) 323, 719
HpaII CCGG 2 cut(s) 165, 1101
HphI GGTGA 8 cut(s) 28, 137, 314, 419, 425, 557, 981, 1043
Hpy166II GTNNAC 6 cut(s) 548, 723, 905, 1226, 1300, 1335
Hpy188I TCNGA 8 cut(s) 64, 75, 86, 373, 696, 711, 1114, 1325
Hpy188III TCNNGA 8 cut(s) 68, 320, 327, 468, 512, 574, 802, 1309
Hpy8I GTNNAC 6 cut(s) 548, 723, 905, 1226, 1300, 1335
HpyCH4III ACNGT 4 cut(s) 93, 149, 953, 1275
HpyCH4IV ACGT 2 cut(s) 497, 1337
HpyCH4V TGCA 9 cut(s) 100, 422, 584, 941, 985, 1162, 1193, 1241, 1264
HpyF10VI GCNNNNNNNGC 4 cut(s) 392, 479, 752, 1238
HpyF3I CTNAG 2 cut(s) 1176, 1322
HpySE526I ACGT 2 cut(s) 497, 1337
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 4 cut(s) 868, 928, 1021, 1312
HspAI GCGC 1 cut(s) 193
KasI GGCGCC 1 cut(s) 192
Kzo9I GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
LmnI GCTCC 3 cut(s) 9, 470, 511
Lsp1109I GCAGC 5 cut(s) 466, 596, 739, 1105, 1267
LweI GCATC 1 cut(s) 466
MabI ACCWGGT 1 cut(s) 820
MaeII ACGT 2 cut(s) 497, 1337
MalI GATC 8 cut(s) 66, 72, 77, 433, 800, 869, 1010, 1068
MboI GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
MboII GAAGA 4 cut(s) 246, 565, 626, 1324
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 2 cut(s) 1008, 1066
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 9 cut(s) 49, 619, 661, 701, 727, 762, 846, 1095, 1206
Mly113I GGCGCC 1 cut(s) 193
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 2 cut(s) 1036, 1044
MseI TTAA 5 cut(s) 188, 227, 651, 1181, 1247
MspA1I CMGCKG 1 cut(s) 1280
MspI CCGG 2 cut(s) 165, 1101
MspR9I CCNGG 2 cut(s) 338, 822
MunI CAATTG 1 cut(s) 1095
Mva1269I GAATGC 2 cut(s) 985, 1048
MvaI CCWGG 2 cut(s) 338, 822
MwoI GCNNNNNNNGC 4 cut(s) 392, 479, 752, 1238
NarI GGCGCC 1 cut(s) 193
NdeII GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
NlaIII CATG 4 cut(s) 868, 928, 1021, 1312
NlaIV GGNNCC 5 cut(s) 194, 645, 930, 1010, 1068
NspV TTCGAA 1 cut(s) 1075
PagI TCATGA 1 cut(s) 1308
PctI GAATGC 2 cut(s) 985, 1048
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 8 cut(s) 248, 385, 481, 586, 754, 757, 1120, 1282
PleI GAGTC 1 cut(s) 727
PluTI GGCGCC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 2 cut(s) 336, 820
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 2 cut(s) 336, 820
PspN4I GGNNCC 5 cut(s) 194, 645, 930, 1010, 1068
PsuI RGATCY 2 cut(s) 1008, 1066
PvuII CAGCTG 1 cut(s) 1280
RsaI GTAC 2 cut(s) 151, 1227
RsaNI GTAC 2 cut(s) 150, 1226
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 5 cut(s) 188, 227, 651, 1181, 1247
SatI GCNGC 8 cut(s) 247, 384, 480, 585, 753, 756, 1119, 1281
Sau3AI GATC 8 cut(s) 64, 70, 75, 431, 798, 867, 1008, 1066
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 2 cut(s) 338, 822
SduI GDGCHC 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 820
SfaNI GCATC 1 cut(s) 466
SfoI GGCGCC 1 cut(s) 194
SfuI TTCGAA 1 cut(s) 1075
SmlI CTYRAG 2 cut(s) 512, 591
SmoI CTYRAG 2 cut(s) 512, 591
Sse9I AATT 9 cut(s) 49, 619, 661, 701, 727, 762, 846, 1095, 1206
SsiI CCGC 6 cut(s) 246, 249, 384, 395, 755, 859
SspDI GGCGCC 1 cut(s) 192
SspI AATATT 1 cut(s) 631
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 336, 820
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 4 cut(s) 93, 149, 953, 1275
TaiI ACGT 2 cut(s) 500, 1340
TaqI TCGA 5 cut(s) 275, 402, 541, 914, 1075
TasI AATT 9 cut(s) 49, 619, 661, 701, 727, 762, 846, 1095, 1206
TauI GCSGC 3 cut(s) 249, 386, 758
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 5 cut(s) 188, 227, 651, 1181, 1247
Tru9I TTAA 5 cut(s) 188, 227, 651, 1181, 1247
TscAI CASTG 2 cut(s) 203, 216
TseI GCWGC 5 cut(s) 479, 584, 752, 1118, 1280
TspDTI ATGAA 6 cut(s) 34, 458, 713, 1034, 1297, 1325
TspGWI ACGGA 2 cut(s) 111, 439
TspRI CASTG 2 cut(s) 203, 216
XagI CCTNNNNNAGG 1 cut(s) 1262
XapI RAATTY 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.