Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009049

Physical Location & Seq

Genomic Coordinates Reverse (-)

24588444 .. 24590778

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCTCCCATCCGACCACTCCAGCTTCAACCTCCTCACCCATTTCGTCAATATCCACCCGTCCGATCGCGGTCCCGATTCTGATCCCATCTTCCTCGGAGGCCTGTTCCTGCACCCGAGTAACACCGTCCCTCCTTCCTTCCTTTCCTTGATTTCACCCAATGTCCGTTTGCGTTCCGGTTCGGGTTGTTGTTTAAGGCGCCGCGGCAGCAGGACGCTGCGTTTTGAAGGTTTGAAGGGAAGCAGCGGCGGTGGCGGCACGTCGTTGTTTTTGTCTGTGAGTTTGTCGATAAAGGGAAGTGAGGAAGAGTATGTTCCGGAATCGGGACAAGTCCTGGGGCAAAATGGGGATAAAAGCTTTTCATCGGAGGAGGCCGCCGTCGTGGCGGTGTTCGAGAAGGATGAGGCTGAGACTGCACGGAAGGGATCGGGTGCTATGAATACCACCAAGCATCTTTGGTCTGGAGCTGTTGCTGCTATGGTTTCAAGGACGTTCGTTGCTCCTCTTGAGAGGCTAAAGCTGGAATATGTAGTTCGTGGCGAACAGAAGAACCTTATTGAACTCATCAGGACGATTGCAGCTTCTCAAGGGCTGAAGGGATTTTGGAAAGGAAATTTTGTCAATATTCTTCGCACGGCACCCTTTAAGGCTATCAATTTCTGTGCTTATGATACTTACAGAAATCATCTGAGGAAACTGTCTCGGAGTGAGGAGTCCACAAATTACGAGAGGTTTCTTGCTGGTGCTGCGGCTGGAATTACAGCTACCTTGCTCTGCTTACCTATGGACACTATCAGGACAAAGATGGTAGCACCTGGCGGAGAAGCCTTGGGTGGTGTAATCGGTGCTTTCCGCCACATGATCCAAACTGAAGGGTTCTTTTCTCTTTACAAGGGTTTACTACCCGCGATTGTGAGCATGGCACCTTCAGGTGCAGTTTTCTACGGCGTTTATGATATACTGAAATCAGCTTATCTTCATTCACCTGAAGGGAGGAAAAGGATCCAACATATGAAACAAGAAGGTGATAAACTGAATGCTTTGGAACAACTGGAGTTGGGTCCCGTTAGAACATTACTATATGGGGCAATTGCTGGTGCCTGTTCTGAAGCTGCTACATATCCATTTGAAGTTGTGAGGAGACACCTTCAAATGCAAGTTCGAGCAACTAAGTTAAGCACGCTTGCAACTTGTATTAAAATTGTCGAGCAAGGAGGTGTGCCTGCTCTTTATGCAGGATTAACACCAAGCCTATTGCAGGTTTTACCATCTGCTGCCATAAGTTATCTTGTGTACGAGTTCATGAAGATTTTTCTCAAAGTCGAGTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

445

Amino Acids

48.22

Weight (kDa)

9.23

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64970 AT5G64970 AT5G64970
fragaria_vesca	FvH4_1g20840
malus_domestica	MD01G1030900.v1.1 MD15G1318200.v1.1
prunus_persica	Prupe.6G187500_v2.0.a1
pyrus_communis	pycom01g05840 pycom15g28540
rosa_chinensis	RchiOBHm_Chr2g0113451
rosa_laevigata	RLG00000018064
rosa_multiflora	Rmu_sc0007415.1_g000018 Rmu_sc0020459.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129230 Rroxscaffold_2G00129930
rosa_rugosa	Rorug02G0187600
rosa_samantha	Rh2AG242100 Rh2BG256000 Rh2CG246300 Rh2DG250000
rosa_wichuraiana	Rw0G018830 Rw2G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1249
AccB1I	GGYRCC	4 cut(s)	198, 637, 922, 1097
AccI	GTMKAC	1 cut(s)	1328
AccII	CGCG	3 cut(s)	69, 204, 908
AccIII	TCCGGA	1 cut(s)	316
AclWI	GGATC	5 cut(s)	77, 433, 856, 997, 1010
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	5 cut(s)	614, 891, 912, 1008, 1128
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	1295
AfiI	CCNNNNNNNGG	2 cut(s)	323, 1258
AgsI	TTSAA	7 cut(s)	28, 227, 235, 486, 560, 1130, 1151
AjiI	CACGTC	1 cut(s)	261
AjnI	CCWGG	2 cut(s)	333, 814
AluBI	AGCT	8 cut(s)	24, 357, 467, 520, 581, 764, 971, 1112
AluI	AGCT	8 cut(s)	24, 357, 467, 520, 581, 764, 971, 1112
Alw26I	GTCTC	3 cut(s)	404, 705, 1135
AlwI	GGATC	5 cut(s)	77, 433, 856, 997, 1010
Ama87I	CYCGRG	1 cut(s)	115
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	2 cut(s)	100, 372
ApeKI	GCWGC	8 cut(s)	207, 217, 243, 473, 578, 746, 1112, 1274
ApoI	RAATTY	1 cut(s)	613
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	71, 1061
AsuHPI	GGTGA	4 cut(s)	28, 147, 975, 1037
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	71, 1061
BamHI	GGATCC	1 cut(s)	1002
BanI	GGYRCC	4 cut(s)	198, 637, 922, 1097
BbvI	GCAGC	8 cut(s)	204, 219, 255, 460, 590, 733, 1099, 1261
BccI	CCATC	4 cut(s)	16, 95, 799, 1276
BceAI	ACGGC	3 cut(s)	362, 651, 961
BciT130I	CCWGG	2 cut(s)	335, 816
BcoDI	GTCTC	3 cut(s)	404, 705, 1135
BfoI	RGCGCY	1 cut(s)	202
BfuAI	ACCTGC	1 cut(s)	1249
BglI	GCCNNNNNGGC	1 cut(s)	383
Bme1390I	CCNGG	2 cut(s)	335, 816
Bme18I	GGWCC	2 cut(s)	71, 1061
BmeT110I	CYCGRG	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	71, 1061
BmiI	GGNNCC	8 cut(s)	73, 200, 639, 924, 1004, 1062, 1063, 1099
BmrFI	CCNGG	2 cut(s)	335, 816
BmsI	GCATC	1 cut(s)	460
BpmI	CTGGAG	3 cut(s)	4, 483, 1073
BpuEI	CTTGAG	2 cut(s)	527, 570
BsaBI	GATNNNNATC	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	94, 202, 334, 828
BsaWI	WCCGGW	2 cut(s)	176, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 1258
Bse1I	ACTGG	1 cut(s)	1056
Bse8I	GATNNNNATC	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	335, 816
BseDI	CCNNGG	4 cut(s)	94, 202, 334, 828
BseGI	GGATG	2 cut(s)	8, 406
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	323, 1258
BseMII	CTCAG	2 cut(s)	399, 680
BseNI	ACTGG	1 cut(s)	1056
BseRI	GAGGAG	5 cut(s)	23, 383, 492, 725, 1153
BseXI	GCAGC	8 cut(s)	204, 219, 255, 460, 590, 733, 1099, 1261
BsgI	GTGCAG	3 cut(s)	95, 399, 954
Bsh1236I	CGCG	3 cut(s)	69, 204, 908
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	102, 374
BshNI	GGYRCC	4 cut(s)	198, 637, 922, 1097
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	177, 317
BslFI	GGGAC	4 cut(s)	57, 113, 339, 1047
BslI	CCNNNNNNNGG	2 cut(s)	323, 1258
BsmAI	GTCTC	3 cut(s)	404, 705, 1135
BsmFI	GGGAC	4 cut(s)	57, 113, 339, 1047
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	102, 374
BsoBI	CYCGRG	1 cut(s)	115
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	5 cut(s)	64, 82, 425, 861, 1002
BspANI	GGCC	2 cut(s)	102, 374
BspCNI	CTCAG	2 cut(s)	400, 681
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	3 cut(s)	69, 204, 908
BspHI	TCATGA	1 cut(s)	1302
BspLI	GGNNCC	8 cut(s)	73, 200, 639, 924, 1004, 1062, 1063, 1099
BspMI	ACCTGC	1 cut(s)	1249
BspPI	GGATC	5 cut(s)	77, 433, 856, 997, 1010
BspT107I	GGYRCC	4 cut(s)	198, 637, 922, 1097
BsrI	ACTGG	1 cut(s)	1056
BssECI	CCNNGG	4 cut(s)	94, 202, 334, 828
BssMI	GATC	5 cut(s)	64, 82, 425, 861, 1002
BssNI	GRCGYC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	828
Bst2UI	CCWGG	2 cut(s)	335, 816
Bst4CI	ACNGT	2 cut(s)	127, 699
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	1181, 1185, 1224
BstDEI	CTNAG	3 cut(s)	408, 689, 1170
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	1256
BstF5I	GGATG	2 cut(s)	8, 406
BstFNI	CGCG	3 cut(s)	69, 204, 908
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	67, 85, 428, 864, 1005
BstMAI	GTCTC	3 cut(s)	404, 705, 1135
BstMBI	GATC	5 cut(s)	64, 82, 425, 861, 1002
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	8 cut(s)	207, 252, 255, 383, 413, 473, 746, 1232
BstNI	CCWGG	2 cut(s)	335, 816
BstSCI	CCNGG	2 cut(s)	333, 814
BstUI	CGCG	3 cut(s)	69, 204, 908
BstV1I	GCAGC	8 cut(s)	204, 219, 255, 460, 590, 733, 1099, 1261
BstX2I	RGATCY	1 cut(s)	1002
BstYI	RGATCY	1 cut(s)	1002
BsuRI	GGCC	2 cut(s)	102, 374
BtgI	CCRYGG	1 cut(s)	202
BtrI	CACGTC	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	8, 406
BveI	ACCTGC	1 cut(s)	1249
Cac8I	GCNNGC	3 cut(s)	1181, 1185, 1224
CciI	TCATGA	1 cut(s)	1302
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	71, 1061
Cfr42I	CCGCGG	1 cut(s)	205
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	1294
CviAII	CATG	3 cut(s)	859, 919, 1303
CviQI	GTAC	1 cut(s)	1294
DdeI	CTNAG	3 cut(s)	408, 689, 1170
DinI	GGCGCC	1 cut(s)	200
DpnI	GATC	5 cut(s)	66, 84, 427, 863, 1004
DpnII	GATC	5 cut(s)	64, 82, 425, 861, 1002
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	2 cut(s)	834, 842
Eco130I	CCWWGG	1 cut(s)	828
Eco147I	AGGCCT	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	71, 1061
Eco57I	CTGAAG	5 cut(s)	614, 891, 912, 1008, 1128
Eco88I	CYCGRG	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	1256
EcoO109I	RGGNCCY	1 cut(s)	1061
EcoRII	CCWGG	2 cut(s)	333, 814
EcoT14I	CCWWGG	1 cut(s)	828
EgeI	GGCGCC	1 cut(s)	200
EheI	GGCGCC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	828
FaeI	CATG	3 cut(s)	862, 922, 1306
FaqI	GGGAC	4 cut(s)	57, 113, 339, 1047
FatI	CATG	3 cut(s)	858, 918, 1302
FauI	CCCGC	1 cut(s)	913
FauNDI	CATATG	1 cut(s)	1011
FblI	GTMKAC	1 cut(s)	1328
FokI	GGATG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	200
GsuI	CTGGAG	3 cut(s)	4, 483, 1073
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	102, 374
HapII	CCGG	2 cut(s)	177, 317
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	862, 922, 1306
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	4 cut(s)	77, 320, 713, 1325
HpaII	CCGG	2 cut(s)	177, 317
HphI	GGTGA	4 cut(s)	28, 147, 975, 1037
Hpy166II	GTNNAC	4 cut(s)	717, 899, 1294, 1329
Hpy188I	TCNGA	8 cut(s)	13, 64, 82, 98, 367, 690, 705, 1108
Hpy188III	TCNNGA	9 cut(s)	74, 317, 324, 394, 462, 506, 568, 796, 1303
Hpy8I	GTNNAC	4 cut(s)	717, 899, 1294, 1329
Hpy99I	CGWCG	2 cut(s)	265, 383
HpyCH4III	ACNGT	2 cut(s)	127, 699
HpyCH4IV	ACGT	2 cut(s)	260, 491
HpyCH4V	TGCA	8 cut(s)	112, 416, 578, 935, 1156, 1187, 1235, 1258
HpyF10VI	GCNNNNNNNGC	8 cut(s)	207, 252, 255, 383, 413, 473, 746, 1232
HpyF3I	CTNAG	3 cut(s)	408, 689, 1170
HpySE526I	ACGT	2 cut(s)	260, 491
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	862, 922, 1306
HspAI	GCGC	1 cut(s)	199
KasI	GGCGCC	1 cut(s)	198
KflI	GGGWCCC	1 cut(s)	1061
Kpn2I	TCCGGA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	64, 82, 425, 861, 1002
LmnI	GCTCC	3 cut(s)	9, 464, 505
Lsp1109I	GCAGC	8 cut(s)	204, 219, 255, 460, 590, 733, 1099, 1261
LweI	GCATC	1 cut(s)	460
MaeII	ACGT	2 cut(s)	260, 491
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	5 cut(s)	66, 84, 427, 863, 1004
MboI	GATC	5 cut(s)	64, 82, 425, 861, 1002
MboII	GAAGA	6 cut(s)	82, 317, 559, 620, 968, 1318
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	1 cut(s)	1002
MluCI	AATT	6 cut(s)	613, 655, 721, 756, 1089, 1200
Mly113I	GGCGCC	1 cut(s)	199
MlyI	GAGTC	2 cut(s)	722, 1334
MmeI	TCCRAC	2 cut(s)	36, 1030
MroI	TCCGGA	1 cut(s)	316
MseI	TTAA	5 cut(s)	194, 645, 1175, 1197, 1241
MspA1I	CMGCKG	2 cut(s)	204, 246
MspI	CCGG	2 cut(s)	177, 317
MspR9I	CCNGG	2 cut(s)	335, 816
MunI	CAATTG	1 cut(s)	1089
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	2 cut(s)	335, 816
MvnI	CGCG	3 cut(s)	69, 204, 908
MwoI	GCNNNNNNNGC	8 cut(s)	207, 252, 255, 383, 413, 473, 746, 1232
NarI	GGCGCC	1 cut(s)	199
NdeI	CATATG	1 cut(s)	1011
NdeII	GATC	5 cut(s)	64, 82, 425, 861, 1002
NlaIII	CATG	3 cut(s)	862, 922, 1306
NlaIV	GGNNCC	8 cut(s)	73, 200, 639, 924, 1004, 1062, 1063, 1099
PagI	TCATGA	1 cut(s)	1302
PceI	AGGCCT	1 cut(s)	102
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	2 cut(s)	77, 320
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	721, 1333
PluTI	GGCGCC	1 cut(s)	202
PpsI	GAGTC	2 cut(s)	721, 1333
PpuMI	RGGWCCY	1 cut(s)	1061
Psp5II	RGGWCCY	1 cut(s)	1061
Psp6I	CCWGG	2 cut(s)	333, 814
PspGI	CCWGG	2 cut(s)	333, 814
PspN4I	GGNNCC	8 cut(s)	73, 200, 639, 924, 1004, 1062, 1063, 1099
PspPI	GGNCC	2 cut(s)	71, 1061
PspPPI	RGGWCCY	1 cut(s)	1061
PsuI	RGATCY	1 cut(s)	1002
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	1295
RsaNI	GTAC	1 cut(s)	1294
SacII	CCGCGG	1 cut(s)	205
SaqAI	TTAA	5 cut(s)	194, 645, 1175, 1197, 1241
Sau3AI	GATC	5 cut(s)	64, 82, 425, 861, 1002
Sau96I	GGNCC	2 cut(s)	71, 1061
SchI	GAGTC	2 cut(s)	722, 1334
ScrFI	CCNGG	2 cut(s)	335, 816
SfaNI	GCATC	1 cut(s)	460
SfoI	GGCGCC	1 cut(s)	200
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	71, 1061
SmlI	CTYRAG	2 cut(s)	506, 585
SmoI	CTYRAG	2 cut(s)	506, 585
Sse9I	AATT	6 cut(s)	613, 655, 721, 756, 1089, 1200
SseBI	AGGCCT	1 cut(s)	102
SspDI	GGCGCC	1 cut(s)	198
SspI	AATATT	1 cut(s)	625
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	333, 814
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	2 cut(s)	127, 699
TaiI	ACGT	2 cut(s)	263, 494
TaqI	TCGA	5 cut(s)	287, 393, 1162, 1206, 1323
TasI	AATT	6 cut(s)	613, 655, 721, 756, 1089, 1200
TauI	GCSGC	6 cut(s)	204, 207, 249, 258, 377, 752
TfiI	GAWTC	2 cut(s)	77, 320
Tru1I	TTAA	5 cut(s)	194, 645, 1175, 1197, 1241
Tru9I	TTAA	5 cut(s)	194, 645, 1175, 1197, 1241
TseI	GCWGC	8 cut(s)	207, 217, 243, 473, 578, 746, 1112, 1274
TspDTI	ATGAA	6 cut(s)	351, 452, 968, 1028, 1291, 1319
TspGWI	ACGGA	2 cut(s)	155, 433
VpaK11BI	GGWCC	2 cut(s)	71, 1061
XagI	CCTNNNNNAGG	1 cut(s)	1256
XapI	RAATTY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	1328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.