Rroxscaffold_2G00129930

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
66037654 .. 66041125
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129930.1

Sequence Viewer

Length: 1281 bp
ATGCACCACCGCGCCGGTTTCAACCTCTCTCGCTTGATCCAATCCCCGCCGTCCGATCCCGACCCCTCGCTCCTCTTCCTCGGTGGCGGCTTGTTCCTCCACCCTCATGAAACCGTCTCTCCCACCTTCCTTTCCCTCCTTCCGGCCAAGTCCAAGACCCGTTCGGGTCGGTGTTTCAGCAAAACGGTGCGTTTTGGGGGTGGCCGCGGCGGAGGGGCGTTCTTGTGCGTGAGCTTGTCAGATGGAAACGAGGGGTATGTTCGGGAATCGGGAGAAGTCCTGGGGCAAAATGGGAATAAAAATTCGACGGCGGAAGAGCAGGCGGCGGAGGTTGTGTTTGAGAAGGAGCGGAGTGAGATTGTGGAGAAGGGATCAGGTGCTATGAATACTACCAAGCATCTCTGGTCTGGAGCTGTTGCTGCCATGGTTTCAAGAACGTTTGTTGCTCCTCTCGAGAGGCTAAAGCTTGAGTACATAGTACGTGGTGAGCAGAAGAACTTGTTTGAGCTCATCAAGACGATTGCAGATTCTCAAGGGCTGAAAGGATTTTGGAAAGGGAATTTTGTGAATATTCTTCGCACGGCACCCTTTAAGGCTATCAATTTCTATGCCTATGATACGTACAGAAACCATCTGGTGAAGTTGTCGGGAAATGAGGAATCCACGAATTTTGAGAGGTTTCTTGCTGGTGCTGCGGCCGGAATTACAGCTACCTTGCTTTGCTTGCCCATGGACACTATCCGGACAAAGATGGTAGCTCCTGGTGGAGAAGCATTGGGTGGTGTAATTGGTGCTTTCCGCCACATGATTCAAACCGAAGGATTCTTCTCTCTTTACAAGGGCTTACTACCCTCTATTGTCAGTATGGCACCTTCAGGTGCAGTTTTCTACGGCGTCTATGATATACTGAAATCAGCTTATCTGCATTCACCTGAAGGGAGGGAGAGACTCCGACACATGAAACAAGAAGGTGACAAACTGAATGCTCTGGAACAAATGGAGTTGGGCACCATTAGAACATTACTGTATGGGGCAATTGCCGGTTGTTGCTCTGAAGCCGCTACATATCCTTTTGAAGTTGTGAGGAGACACCTTCAAATGCAAGTTCCGGCAACTAGATTAAGTGCAGTTGCAACTTGTGCGAAGATTGTTGAGCAAGGAGGCGTTCCTGCTCTTTATGCTGGATTGATACCCAGCTTGTTGCAGGTCTTACCATCTGCTGCCATCAGTTATTTTGTGTACGAGTTCATGAAGATTCTTCTCAAAGTAGAGTCTTCATAG

Protein Analysis

426

Amino Acids

46.36

Weight (kDa)

8.97

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 128 - 214 1.1e-19 Mitochondrial carrier protein
Mito_carr PF00153 221 - 308 2.1e-20 Mitochondrial carrier protein
Mito_carr PF00153 336 - 422 6.4e-19 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1195
AccB1I GGYRCC 3 cut(s) 583, 868, 1007
AccBSI CCGCTC 1 cut(s) 349
AccII CGCG 2 cut(s) 12, 207
AccIII TCCGGA 1 cut(s) 741
AclI AACGTT 1 cut(s) 437
AclWI GGATC 3 cut(s) 31, 50, 379
AcoI YGGCCR 3 cut(s) 144, 202, 696
AcsI RAATTY 3 cut(s) 301, 559, 667
AcuI CTGAAG 3 cut(s) 858, 954, 1074
AcyI GRCGYC 1 cut(s) 894
AfaI GTAC 4 cut(s) 473, 480, 623, 1241
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 5 cut(s) 22, 432, 812, 1076, 1097
AjnI CCWGG 2 cut(s) 279, 760
AluBI AGCT 8 cut(s) 234, 413, 466, 508, 710, 758, 917, 1197
AluI AGCT 8 cut(s) 234, 413, 466, 508, 710, 758, 917, 1197
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 3 cut(s) 121, 940, 1081
AlwI GGATC 3 cut(s) 31, 50, 379
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 741
AoxI GGCC 3 cut(s) 144, 202, 696
ApeKI GCWGC 3 cut(s) 419, 692, 1220
ApoI RAATTY 3 cut(s) 301, 559, 667
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 4 cut(s) 497, 649, 921, 983
AvaI CYCGRG 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 1010
BanI GGYRCC 3 cut(s) 583, 868, 1007
BanII GRGCYC 1 cut(s) 510
BarI GAAGNNNNNNTAC 2 cut(s) 856, 888
BbsI GAAGAC 1 cut(s) 1266
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 406, 679, 1207
BccI CCATC 5 cut(s) 236, 639, 745, 1222, 1232
BceAI ACGGC 4 cut(s) 34, 324, 597, 907
BciT130I CCWGG 2 cut(s) 281, 762
BcoDI GTCTC 3 cut(s) 121, 940, 1081
BfaI CTAG 1 cut(s) 1116
BfuAI ACCTGC 1 cut(s) 1195
BisI GCNGC 9 cut(s) 88, 205, 208, 324, 420, 693, 696, 1059, 1221
BlsI GCNGC 9 cut(s) 89, 206, 209, 325, 421, 694, 697, 1060, 1222
Bme1390I CCNGG 2 cut(s) 281, 762
BmeT110I CYCGRG 1 cut(s) 452
BmiI GGNNCC 3 cut(s) 585, 870, 1009
BmrFI CCNGG 2 cut(s) 281, 762
BmsI GCATC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 1266
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 488, 516
BsaAI YACGTR 2 cut(s) 482, 621
BsaHI GRCGYC 1 cut(s) 894
BsaJI CCNNGG 5 cut(s) 79, 205, 280, 423, 729
BsaWI WCCGGW 1 cut(s) 741
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse118I RCCGGY 2 cut(s) 14, 1040
BseAI TCCGGA 1 cut(s) 741
BseBI CCWGG 2 cut(s) 281, 762
BseDI CCNNGG 5 cut(s) 79, 205, 280, 423, 729
BseLI CCNNNNNNNGG 1 cut(s) 142
BseRI GAGGAG 3 cut(s) 62, 438, 1099
BseSI GKGCMC 1 cut(s) 1010
BseX3I CGGCCG 1 cut(s) 696
BseXI GCAGC 3 cut(s) 406, 679, 1207
BseYI CCCAGC 1 cut(s) 1193
BsgI GTGCAG 2 cut(s) 900, 1146
Bsh1236I CGCG 2 cut(s) 12, 207
Bsh1285I CGRYCG 1 cut(s) 699
BshFI GGCC 3 cut(s) 146, 204, 698
BshNI GGYRCC 3 cut(s) 583, 868, 1007
BsiEI CGRYCG 1 cut(s) 699
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 6 cut(s) 15, 143, 699, 742, 1041, 1109
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 3 cut(s) 121, 940, 1081
BsmBI CGTCTC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 925, 988
BsnI GGCC 3 cut(s) 146, 204, 698
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 510, 1010
Bsp13I TCCGGA 1 cut(s) 741
Bsp143I GATC 3 cut(s) 36, 55, 371
Bsp19I CCATGG 2 cut(s) 423, 729
BspANI GGCC 3 cut(s) 146, 204, 698
BspEI TCCGGA 1 cut(s) 741
BspFNI CGCG 2 cut(s) 12, 207
BspHI TCATGA 2 cut(s) 106, 1248
BspLI GGNNCC 3 cut(s) 585, 870, 1009
BspMI ACCTGC 1 cut(s) 1195
BspPI GGATC 3 cut(s) 31, 50, 379
BspQI GCTCTTC 1 cut(s) 309
BspT107I GGYRCC 3 cut(s) 583, 868, 1007
BsrBI CCGCTC 1 cut(s) 349
BsrFI RCCGGY 2 cut(s) 14, 1040
BssAI RCCGGY 2 cut(s) 14, 1040
BssECI CCNNGG 5 cut(s) 79, 205, 280, 423, 729
BssMI GATC 3 cut(s) 36, 55, 371
BssNI GRCGYC 1 cut(s) 894
BssT1I CCWWGG 2 cut(s) 423, 729
Bst2UI CCWGG 2 cut(s) 281, 762
Bst4CI ACNGT 3 cut(s) 115, 187, 1026
Bst6I CTCTTC 2 cut(s) 80, 309
BstACI GRCGYC 1 cut(s) 894
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstBAI YACGTR 2 cut(s) 482, 621
BstC8I GCNNGC 2 cut(s) 321, 725
BstDSI CCRYGG 3 cut(s) 205, 423, 729
BstFNI CGCG 2 cut(s) 12, 207
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 39, 58, 374
BstMAI GTCTC 3 cut(s) 121, 940, 1081
BstMBI GATC 3 cut(s) 36, 55, 371
BstMCI CGRYCG 1 cut(s) 699
BstMWI GCNNNNNNNGC 5 cut(s) 419, 692, 724, 1139, 1178
BstNI CCWGG 2 cut(s) 281, 762
BstSCI CCNGG 2 cut(s) 279, 760
BstSLI GKGCMC 1 cut(s) 1010
BstSNI TACGTA 1 cut(s) 621
BstUI CGCG 2 cut(s) 12, 207
BstV1I GCAGC 3 cut(s) 406, 679, 1207
BstV2I GAAGAC 1 cut(s) 1266
BstZI CGGCCG 1 cut(s) 696
BsuRI GGCC 3 cut(s) 146, 204, 698
BtgI CCRYGG 3 cut(s) 205, 423, 729
BveI ACCTGC 1 cut(s) 1195
Cac8I GCNNGC 2 cut(s) 321, 725
CciI TCATGA 2 cut(s) 106, 1248
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 2 cut(s) 14, 1040
Cfr42I CCGCGG 1 cut(s) 208
CseI GACGC 1 cut(s) 883
Csp6I GTAC 4 cut(s) 472, 479, 622, 1240
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 6 cut(s) 107, 424, 730, 805, 958, 1249
CviQI GTAC 4 cut(s) 472, 479, 622, 1240
DpnI GATC 3 cut(s) 38, 57, 373
DpnII GATC 3 cut(s) 36, 55, 371
EaeI YGGCCR 3 cut(s) 144, 202, 696
EagI CGGCCG 1 cut(s) 696
Eam1104I CTCTTC 2 cut(s) 80, 309
EarI CTCTTC 2 cut(s) 80, 309
EciI GGCGGA 4 cut(s) 225, 326, 341, 788
Ecl136II GAGCTC 1 cut(s) 508
EclXI CGGCCG 1 cut(s) 696
Eco105I TACGTA 1 cut(s) 621
Eco130I CCWWGG 2 cut(s) 423, 729
Eco24I GRGCYC 1 cut(s) 510
Eco52I CGGCCG 1 cut(s) 696
Eco53kI GAGCTC 1 cut(s) 508
Eco57I CTGAAG 3 cut(s) 858, 954, 1074
Eco88I CYCGRG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 279, 760
EcoT14I CCWWGG 2 cut(s) 423, 729
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 2 cut(s) 423, 729
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 6 cut(s) 110, 427, 733, 808, 961, 1252
FatI CATG 6 cut(s) 106, 423, 729, 804, 957, 1248
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 9 cut(s) 88, 205, 208, 324, 420, 693, 696, 1059, 1221
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 9 cut(s) 88, 205, 208, 324, 420, 693, 696, 1059, 1221
FspBI CTAG 1 cut(s) 1116
GlaI GCGC 1 cut(s) 13
GluI GCNGC 9 cut(s) 88, 205, 208, 324, 420, 693, 696, 1059, 1221
GsaI CCCAGC 1 cut(s) 1197
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 3 cut(s) 146, 204, 698
HapII CCGG 6 cut(s) 15, 143, 699, 742, 1041, 1109
HgaI GACGC 1 cut(s) 883
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 894
Hin1II CATG 6 cut(s) 110, 427, 733, 808, 961, 1252
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 8 cut(s) 266, 527, 659, 808, 822, 948, 1255, 1271
HpaII CCGG 6 cut(s) 15, 143, 699, 742, 1041, 1109
HphI GGTGA 4 cut(s) 497, 649, 921, 983
Hpy166II GTNNAC 1 cut(s) 1240
Hpy188I TCNGA 4 cut(s) 55, 241, 953, 1054
Hpy8I GTNNAC 1 cut(s) 1240
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 9 cut(s) 136, 149, 337, 361, 812, 882, 929, 962, 1103
HpyCH4III ACNGT 3 cut(s) 115, 187, 1026
HpyCH4IV ACGT 3 cut(s) 437, 481, 620
HpyCH4V TGCA 8 cut(s) 4, 524, 881, 925, 1102, 1127, 1133, 1204
HpyF10VI GCNNNNNNNGC 5 cut(s) 419, 692, 724, 1139, 1178
HpySE526I ACGT 3 cut(s) 437, 481, 620
Hsp92I GRCGYC 1 cut(s) 894
Hsp92II CATG 6 cut(s) 110, 427, 733, 808, 961, 1252
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 741
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 36, 55, 371
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 5 cut(s) 75, 346, 410, 451, 763
Lsp1109I GCAGC 3 cut(s) 406, 679, 1207
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 1116
MaeII ACGT 3 cut(s) 437, 481, 620
MaeIII GTNAC 1 cut(s) 971
MalI GATC 3 cut(s) 38, 57, 373
MbiI CCGCTC 1 cut(s) 349
MboI GATC 3 cut(s) 36, 55, 371
MboII GAAGA 9 cut(s) 67, 326, 505, 566, 817, 1156, 1250, 1264, 1266
MfeI CAATTG 1 cut(s) 1035
MhlI GDGCHC 2 cut(s) 510, 1010
MluCI AATT 7 cut(s) 301, 559, 601, 667, 702, 786, 1035
MlyI GAGTC 2 cut(s) 942, 1280
MmeI TCCRAC 1 cut(s) 976
MroI TCCGGA 1 cut(s) 741
MseI TTAA 2 cut(s) 591, 1121
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 6 cut(s) 15, 143, 699, 742, 1041, 1109
MspR9I CCNGG 2 cut(s) 281, 762
MunI CAATTG 1 cut(s) 1035
Mva1269I GAATGC 2 cut(s) 925, 988
MvaI CCWGG 2 cut(s) 281, 762
MvnI CGCG 2 cut(s) 12, 207
MwoI GCNNNNNNNGC 5 cut(s) 419, 692, 724, 1139, 1178
NcoI CCATGG 2 cut(s) 423, 729
NdeII GATC 3 cut(s) 36, 55, 371
NlaIII CATG 6 cut(s) 110, 427, 733, 808, 961, 1252
NlaIV GGNNCC 3 cut(s) 585, 870, 1009
NmuCI GTSAC 1 cut(s) 971
PaeR7I CTCGAG 1 cut(s) 452
PagI TCATGA 2 cut(s) 106, 1248
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 2 cut(s) 925, 988
PfeI GAWTC 6 cut(s) 266, 527, 659, 808, 822, 1255
PkrI GCNGC 9 cut(s) 89, 206, 209, 325, 421, 694, 697, 1060, 1222
PleI GAGTC 2 cut(s) 942, 1279
PpsI GAGTC 2 cut(s) 942, 1279
Ppu21I YACGTR 2 cut(s) 482, 621
Psp124BI GAGCTC 1 cut(s) 510
Psp1406I AACGTT 1 cut(s) 437
Psp6I CCWGG 2 cut(s) 279, 760
PspFI CCCAGC 1 cut(s) 1193
PspGI CCWGG 2 cut(s) 279, 760
PspN4I GGNNCC 3 cut(s) 585, 870, 1009
RsaI GTAC 4 cut(s) 473, 480, 623, 1241
RsaNI GTAC 4 cut(s) 472, 479, 622, 1240
RseI CAYNNNNRTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 510
SacII CCGCGG 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 591, 1121
SatI GCNGC 9 cut(s) 88, 205, 208, 324, 420, 693, 696, 1059, 1221
Sau3AI GATC 3 cut(s) 36, 55, 371
SchI GAGTC 2 cut(s) 942, 1280
ScrFI CCNGG 2 cut(s) 281, 762
SduI GDGCHC 2 cut(s) 510, 1010
SfaNI GCATC 1 cut(s) 406
Sfr274I CTCGAG 1 cut(s) 452
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 3 cut(s) 452, 467, 531
SmoI CTYRAG 3 cut(s) 452, 467, 531
SnaBI TACGTA 1 cut(s) 621
Sse9I AATT 7 cut(s) 301, 559, 601, 667, 702, 786, 1035
SspI AATATT 1 cut(s) 571
SspMI CTAG 1 cut(s) 1116
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 279, 760
StyI CCWWGG 2 cut(s) 423, 729
TaaI ACNGT 3 cut(s) 115, 187, 1026
TaiI ACGT 3 cut(s) 440, 484, 623
TaqI TCGA 2 cut(s) 305, 453
TasI AATT 7 cut(s) 301, 559, 601, 667, 702, 786, 1035
TatI WGTACW 1 cut(s) 471
TauI GCSGC 6 cut(s) 90, 207, 210, 326, 698, 1061
TfiI GAWTC 6 cut(s) 266, 527, 659, 808, 822, 1255
Tru1I TTAA 2 cut(s) 591, 1121
Tru9I TTAA 2 cut(s) 591, 1121
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 3 cut(s) 419, 692, 1220
Tsp45I GTSAC 1 cut(s) 971
TspDTI ATGAA 6 cut(s) 123, 398, 974, 1237, 1265, 1266
XapI RAATTY 3 cut(s) 301, 559, 667
XhoI CTCGAG 1 cut(s) 452
XspI CTAG 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.