Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020459.1

Orthogroup ID

OG0009049

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 964

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atccggacaaagatggtagctcctggtggagaagcattgggtggtgtaattggtgctttccgccacatgattcaaaccgaaggattcttctctctttacaagggcttactaccctccattgtcagtatggcaccttcaggtgcagttttctacggcgtctatgatatactgaaatcagcttatctgcattcacctgaagggagggagagactccgacacatgaaacaagaaggtggcaaactgaatgctctggaacaaatggagttgggtaccattagaacattactgtatggagcaattgccggttgttgctctgaagccgctacatatccttttgaagttgtgaggagacaccttcaattgcaagttccggcaactagattaagtgcagttgcaacttgtgcgaagattgttgagcaaggaggcgttcctgctctttatgctggattgatacccagcttgttgcaggtcttaccatctgctgccatcagttattttgtgtacgagttcatgaagattcttctaaaagtagagtcttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006950 GO:0006979 GO:0008150 GO:0008509 GO:0008514 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034220 GO:0034599 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0051592 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071702 GO:0071705 GO:0098656 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

180

Amino Acids

19.48

Weight (kDa)

9.0

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64970 AT5G64970 AT5G64970
fragaria_vesca	FvH4_1g20840
malus_domestica	MD01G1030900.v1.1 MD15G1318200.v1.1
prunus_persica	Prupe.6G187500_v2.0.a1
pyrus_communis	pycom01g05840 pycom15g28540
rosa_chinensis	RchiOBHm_Chr2g0113451
rosa_laevigata	RLG00000018064
rosa_multiflora	Rmu_sc0007415.1_g000018 Rmu_sc0020459.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129230 Rroxscaffold_2G00129930
rosa_rugosa	Rorug02G0187600
rosa_samantha	Rh2AG242100 Rh2BG256000 Rh2CG246300 Rh2DG250000
rosa_wichuraiana	Rw0G018830 Rw2G018890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	2 cut(s)	130, 269
AccIII	TCCGGA	1 cut(s)	3
AciI	CCGC	2 cut(s)	61, 321
AcuI	CTGAAG	3 cut(s)	120, 216, 336
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	271, 503
AgsI	TTSAA	3 cut(s)	74, 338, 359
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	20, 179, 459
AluI	AGCT	3 cut(s)	20, 179, 459
Alw26I	GTCTC	2 cut(s)	202, 343
Aor13HI	TCCGGA	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	482
Asp718I	GGTACC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	183
BanI	GGYRCC	2 cut(s)	130, 269
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	3 cut(s)	7, 484, 494
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	202, 343
BfaI	CTAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	2 cut(s)	321, 483
BlsI	GCNGC	2 cut(s)	322, 484
Bme1390I	CCNGG	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	132, 271
BmrFI	CCNGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	3
Bse118I	RCCGGY	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	3
BseBI	CCWGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	469
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	2 cut(s)	162, 408
BshNI	GGYRCC	2 cut(s)	130, 269
BsiSI	CCGG	3 cut(s)	4, 303, 371
BsmAI	GTCTC	2 cut(s)	202, 343
BsmI	GAATGC	2 cut(s)	187, 250
Bsp13I	TCCGGA	1 cut(s)	3
BspACI	CCGC	2 cut(s)	61, 321
BspEI	TCCGGA	1 cut(s)	3
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	132, 271
BspMI	ACCTGC	1 cut(s)	457
BspT107I	GGYRCC	2 cut(s)	130, 269
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstMAI	GTCTC	2 cut(s)	202, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 440
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	457
CciI	TCATGA	1 cut(s)	510
Cfr10I	RCCGGY	1 cut(s)	302
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	270, 502
CviAII	CATG	3 cut(s)	67, 220, 511
CviJI	RGCY	5 cut(s)	20, 105, 179, 320, 459
CviKI_1	RGCY	5 cut(s)	20, 105, 179, 320, 459
CviQI	GTAC	2 cut(s)	270, 502
EciI	GGCGGA	1 cut(s)	50
Eco57I	CTGAAG	3 cut(s)	120, 216, 336
EcoRII	CCWGG	1 cut(s)	22
FaeI	CATG	3 cut(s)	70, 223, 514
FatI	CATG	3 cut(s)	66, 219, 510
Fnu4HI	GCNGC	2 cut(s)	321, 483
Fsp4HI	GCNGC	2 cut(s)	321, 483
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	321, 483
GsaI	CCCAGC	1 cut(s)	459
HapII	CCGG	3 cut(s)	4, 303, 371
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	70, 223, 514
HinfI	GANTC	5 cut(s)	70, 84, 210, 517, 533
HpaII	CCGG	3 cut(s)	4, 303, 371
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	215, 316
Hpy188III	TCNNGA	3 cut(s)	4, 251, 511
Hpy8I	GTNNAC	1 cut(s)	502
HpyAV	CCTTC	5 cut(s)	74, 144, 191, 224, 365
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	6 cut(s)	143, 187, 364, 389, 395, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 440
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	70, 223, 514
Kpn2I	TCCGGA	1 cut(s)	3
KpnI	GGTACC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	25, 293
Lsp1109I	GCAGC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	378
MboII	GAAGA	5 cut(s)	79, 418, 512, 526, 528
MfeI	CAATTG	2 cut(s)	297, 359
MluCI	AATT	3 cut(s)	48, 297, 359
MlyI	GAGTC	2 cut(s)	204, 542
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	4 cut(s)	124, 195, 339, 416
MroI	TCCGGA	1 cut(s)	3
MseI	TTAA	1 cut(s)	383
MspI	CCGG	3 cut(s)	4, 303, 371
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	2 cut(s)	297, 359
Mva1269I	GAATGC	2 cut(s)	187, 250
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	401, 440
NlaIII	CATG	3 cut(s)	70, 223, 514
NlaIV	GGNNCC	2 cut(s)	132, 271
PagI	TCATGA	1 cut(s)	510
PctI	GAATGC	2 cut(s)	187, 250
PfeI	GAWTC	3 cut(s)	70, 84, 517
PkrI	GCNGC	2 cut(s)	322, 484
PleI	GAGTC	2 cut(s)	204, 541
PpsI	GAGTC	2 cut(s)	204, 541
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	132, 271
RsaI	GTAC	2 cut(s)	271, 503
RsaNI	GTAC	2 cut(s)	270, 502
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	2 cut(s)	321, 483
SchI	GAGTC	2 cut(s)	204, 542
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	9 cut(s)	22, 136, 142, 181, 196, 235, 357, 461, 471
Sse9I	AATT	3 cut(s)	48, 297, 359
SsiI	CCGC	2 cut(s)	61, 321
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	288
TasI	AATT	3 cut(s)	48, 297, 359
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	3 cut(s)	70, 84, 517
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	4 cut(s)	236, 499, 527, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.