Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009304

Physical Location & Seq

Genomic Coordinates Forward (+)

3154324 .. 3155597

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAATTCCTCGTCACTTATGTTGCGTCGGTTCTTGTGCTTCGCTGCCTCCACTCCTTCTTCTTCTACTACTCTATGCTTCTCTTCCAACAGGAACAGGAAGCCCCTCGTCTTCCTAGGGTCCCCTCAGGTCTCTGCAACTGTTCTTGACGCCCTGCTTGATGCATCCGGTGCCCCTGATTCTCTGTTTGAGGTTGCAGCAATTGTCACCCAACCGCCTTCCAGGAAGGATAGGGGGAAGAAGCTGCTGCCTTCTCCTTTAGCACAACATGCTCTTGACAGAGGCTTCCCTTCGGACCTCATTTTCACACCTACACGAGCTGGAGAGGATATGTTCCTTTCCACCTTAAGAGCTTTGCAGCCAGAGCTTTGCATTACTGCTGCATACGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACATTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGCGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAGGGAAACCGGAGTATCCTTAGCATTCACTGTCCGTGCGCTGGATGCTGGACCTGTTATTGCCAGTGAAAAAATGGAAATCGATGATCATATTAAGGCCCCAGATTTGCTTGCTCTCTTATTTTCTAAAGGATCCAAACTATTGATTCACCAGCTTCCTTACATATTTGATGGTTCAGCTAAGTTGAAAGCGCAGCCCCAGGATGACTCCAAAGCTACCTTAGCTCCAAAGATTTCTGCTGAGGAGTCATGGCTATCATTTGACCAGGAAGCTGTAGCCCTACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTGGTTGTTGACAATAAAAATGGTCACCACAATATGCTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCATAGCAATAATCCGGTCAACCAAGCAGATGACATCTCTTTTCAAAAGGGTGCATTAGTATTCCCCTGTGGAGGGTCCACATTGCTTGAGGTGCTGGAGATTCAGCTTCCTGGCAAGAAGGTTATGAATGCAGCTGCCTTCTGGAATGGTTTACGTGGTCAACAACTTCAAAGATTTGTTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko00970 map00670 map00970

Pfam Domains

Protein Families

Formyl_trans_C Formyl_trans_N

Protein Analysis

368

Amino Acids

39.72

Weight (kDa)

8.9

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	38 - 219	2e-32	Formyl transferase
Formyl_trans_C	PF02911	247 - 356	1.7e-17	Formyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66520 AT1G66520
fragaria_vesca	FvH4_2g04020
malus_domestica	MD09G1260600.v1.1
prunus_persica	Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1
pyrus_communis	pycom09g17510
rosa_chinensis	RchiOBHm_Chr3g0491591 RchiOBHm_Chr3g0493551
rosa_laevigata	RLG00000022705 RLG00000022838
rosa_multiflora	Rmu_sc0000927.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392850
rosa_rugosa	Rorug03G0250000
rosa_samantha	Rh3AG299300 Rh3AG311200 Rh3BG335300 Rh3BG347100 Rh3CG345200 Rh3DG347400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	471
AciI	CCGC	2 cut(s)	215, 471
AclWI	GGATC	2 cut(s)	636, 649
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	5 cut(s)	427, 428, 550, 986, 987
AflII	CTTAAG	1 cut(s)	346
AgsI	TTSAA	4 cut(s)	488, 697, 959, 1085
AjnI	CCWGG	5 cut(s)	221, 708, 774, 823, 1024
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	636, 649
AlwNI	CAGNNNCTG	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	2 cut(s)	606, 821
ApoI	RAATTY	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	550, 703
AspS9I	GGNCC	5 cut(s)	120, 295, 560, 607, 990
AsuHPI	GGTGA	3 cut(s)	199, 650, 860
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	4 cut(s)	120, 295, 560, 990
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	126
BaeGI	GKGCMC	2 cut(s)	175, 434
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BamHI	GGATCC	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	750
BccI	CCATC	3 cut(s)	497, 674, 813
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	5 cut(s)	223, 710, 776, 825, 1026
BciVI	GTATCC	1 cut(s)	535
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	116, 402
BfmI	CTRYAG	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	535
BlnI	CCTAGG	1 cut(s)	115
Bme1390I	CCNGG	5 cut(s)	223, 710, 776, 825, 1026
Bme18I	GGWCC	4 cut(s)	120, 295, 560, 990
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	5 cut(s)	120, 295, 560, 607, 990
BmiI	GGNNCC	6 cut(s)	121, 122, 172, 609, 643, 991
BmrFI	CCNGG	5 cut(s)	223, 710, 776, 825, 1026
BmsI	GCATC	3 cut(s)	151, 173, 544
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	3 cut(s)	342, 902, 1031
Bpu10I	CCTNAGC	3 cut(s)	529, 730, 750
BpuEI	CTTGAG	1 cut(s)	1022
Bsa29I	ATCGAT	1 cut(s)	591
BsaAI	YACGTR	1 cut(s)	1070
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	115, 708
BsaWI	WCCGGW	3 cut(s)	167, 518, 928
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	5 cut(s)	427, 428, 550, 986, 987
Bse1I	ACTGG	1 cut(s)	573
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	995
BseBI	CCWGG	5 cut(s)	223, 710, 776, 825, 1026
BseCI	ATCGAT	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	115, 708
BseGI	GGATG	5 cut(s)	164, 508, 559, 718, 824
BseLI	CCNNNNNNNGG	5 cut(s)	427, 428, 550, 986, 987
BseMI	GCAATG	1 cut(s)	995
BseMII	CTCAG	2 cut(s)	140, 741
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	767
BseSI	GKGCMC	2 cut(s)	175, 434
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	608, 823
BshNI	GGYRCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	3 cut(s)	168, 519, 929
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	5 cut(s)	427, 428, 550, 986, 987
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	2 cut(s)	533, 1048
BsnI	GGCC	2 cut(s)	608, 823
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	831
Bsp1286I	GDGCHC	2 cut(s)	175, 434
Bsp143I	GATC	2 cut(s)	595, 641
BspACI	CCGC	2 cut(s)	215, 471
BspANI	GGCC	2 cut(s)	608, 823
BspCNI	CTCAG	2 cut(s)	139, 742
BspDI	ATCGAT	1 cut(s)	591
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	6 cut(s)	121, 122, 172, 609, 643, 991
BspPI	GGATC	2 cut(s)	636, 649
BspT107I	GGYRCC	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	995
BsrI	ACTGG	1 cut(s)	573
BssECI	CCNNGG	2 cut(s)	115, 708
BssMI	GATC	2 cut(s)	595, 641
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	5 cut(s)	223, 710, 776, 825, 1026
Bst4CI	ACNGT	3 cut(s)	142, 436, 541
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	346
BstAPI	GCANNNNNTGC	2 cut(s)	170, 269
BstBAI	YACGTR	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	5 cut(s)	126, 529, 690, 730, 750
BstEII	GGTNACC	1 cut(s)	866
BstF5I	GGATG	5 cut(s)	164, 508, 559, 718, 824
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	550, 703
BstKTI	GATC	2 cut(s)	598, 644
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	2 cut(s)	595, 641
BstMWI	GCNNNNNNNGC	7 cut(s)	170, 269, 364, 554, 731, 918, 1006
BstNI	CCWGG	5 cut(s)	223, 710, 776, 825, 1026
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	866
BstSCI	CCNGG	5 cut(s)	221, 708, 774, 823, 1024
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	2 cut(s)	175, 434
BstUI	CGCG	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	591
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	608, 823
BsuTUI	ATCGAT	1 cut(s)	591
BtsCI	GGATG	5 cut(s)	164, 508, 559, 718, 824
BtsIMutI	CAGTG	2 cut(s)	537, 580
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	2 cut(s)	550, 703
Cfr13I	GGNCC	5 cut(s)	120, 295, 560, 607, 990
ClaI	ATCGAT	1 cut(s)	591
CseI	GACGC	2 cut(s)	14, 158
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	2 cut(s)	269, 759
DdeI	CTNAG	5 cut(s)	126, 529, 690, 730, 750
DpnI	GATC	2 cut(s)	597, 643
DpnII	GATC	2 cut(s)	595, 641
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	4 cut(s)	120, 295, 560, 990
Eco81I	CCTNAGG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	831
Eco91I	GGTNACC	1 cut(s)	866
EcoO109I	RGGNCCY	2 cut(s)	120, 607
EcoO65I	GGTNACC	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	5 cut(s)	221, 708, 774, 823, 1024
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	272, 762
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	268, 758
FbaI	TGATCA	1 cut(s)	595
FokI	GGATG	5 cut(s)	151, 515, 566, 725, 831
FspBI	CTAG	2 cut(s)	116, 402
GlaI	GCGC	2 cut(s)	549, 702
GsuI	CTGGAG	3 cut(s)	342, 902, 1031
HaeIII	GGCC	2 cut(s)	608, 823
HapII	CCGG	3 cut(s)	168, 519, 929
HgaI	GACGC	2 cut(s)	14, 158
HhaI	GCGC	2 cut(s)	550, 703
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	272, 762
Hin6I	GCGC	2 cut(s)	548, 701
HinP1I	GCGC	2 cut(s)	548, 701
HincII	GTYRAC	3 cut(s)	853, 934, 1076
HindII	GTYRAC	3 cut(s)	853, 934, 1076
HinfI	GANTC	5 cut(s)	179, 655, 716, 755, 1015
HpaII	CCGG	3 cut(s)	168, 519, 929
HphI	GGTGA	3 cut(s)	199, 650, 860
Hpy166II	GTNNAC	5 cut(s)	853, 934, 993, 1067, 1076
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	4 cut(s)	146, 275, 421, 1057
Hpy8I	GTNNAC	5 cut(s)	853, 934, 993, 1067, 1076
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	7 cut(s)	66, 220, 228, 261, 300, 1027, 1063
HpyCH4III	ACNGT	3 cut(s)	142, 436, 541
HpyCH4IV	ACGT	1 cut(s)	1069
HpyF10VI	GCNNNNNNNGC	7 cut(s)	170, 269, 364, 554, 731, 918, 1006
HpyF3I	CTNAG	5 cut(s)	126, 529, 690, 730, 750
HpySE526I	ACGT	1 cut(s)	1069
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	272, 762
HspAI	GCGC	2 cut(s)	548, 701
KflI	GGGWCCC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	595, 641
LmnI	GCTCC	2 cut(s)	739, 883
LweI	GCATC	3 cut(s)	151, 173, 544
MaeI	CTAG	2 cut(s)	116, 402
MaeII	ACGT	1 cut(s)	1069
MaeIII	GTNAC	3 cut(s)	12, 205, 866
MalI	GATC	2 cut(s)	597, 643
MboI	GATC	2 cut(s)	595, 641
MboII	GAAGA	5 cut(s)	51, 54, 75, 103, 250
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	2 cut(s)	175, 434
MluCI	AATT	3 cut(s)	4, 201, 891
MlyI	GAGTC	2 cut(s)	710, 764
MmeI	TCCRAC	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	4 cut(s)	347, 414, 603, 888
MspA1I	CMGCKG	1 cut(s)	1049
MspCI	CTTAAG	1 cut(s)	346
MspI	CCGG	3 cut(s)	168, 519, 929
MspR9I	CCNGG	5 cut(s)	223, 710, 776, 825, 1026
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	2 cut(s)	533, 1048
MvaI	CCWGG	5 cut(s)	223, 710, 776, 825, 1026
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	7 cut(s)	170, 269, 364, 554, 731, 918, 1006
NdeII	GATC	2 cut(s)	595, 641
NlaIII	CATG	2 cut(s)	272, 762
NlaIV	GGNNCC	6 cut(s)	121, 122, 172, 609, 643, 991
NmuCI	GTSAC	3 cut(s)	12, 205, 866
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	831
PctI	GAATGC	2 cut(s)	533, 1048
PfeI	GAWTC	3 cut(s)	179, 655, 1015
PfoI	TCCNGGA	1 cut(s)	221
PleI	GAGTC	2 cut(s)	710, 763
PpsI	GAGTC	2 cut(s)	710, 763
Ppu21I	YACGTR	1 cut(s)	1070
PpuMI	RGGWCCY	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	5 cut(s)	221, 708, 774, 823, 1024
PspEI	GGTNACC	1 cut(s)	866
PspGI	CCWGG	5 cut(s)	221, 708, 774, 823, 1024
PspN4I	GGNNCC	6 cut(s)	121, 122, 172, 609, 643, 991
PspPI	GGNCC	5 cut(s)	120, 295, 560, 607, 990
PspPPI	RGGWCCY	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	831
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	1049
SaqAI	TTAA	4 cut(s)	347, 414, 603, 888
Sau3AI	GATC	2 cut(s)	595, 641
Sau96I	GGNCC	5 cut(s)	120, 295, 560, 607, 990
SchI	GAGTC	2 cut(s)	710, 764
ScrFI	CCNGG	5 cut(s)	223, 710, 776, 825, 1026
SduI	GDGCHC	2 cut(s)	175, 434
SfaNI	GCATC	3 cut(s)	151, 173, 544
SfcI	CTRYAG	1 cut(s)	783
Sfr274I	CTCGAG	1 cut(s)	831
SinI	GGWCC	4 cut(s)	120, 295, 560, 990
SlaI	CTCGAG	1 cut(s)	831
SmlI	CTYRAG	3 cut(s)	346, 831, 1001
SmoI	CTYRAG	3 cut(s)	346, 831, 1001
Sse9I	AATT	3 cut(s)	4, 201, 891
SsiI	CCGC	2 cut(s)	215, 471
SspMI	CTAG	2 cut(s)	116, 402
StyD4I	CCNGG	5 cut(s)	221, 708, 774, 823, 1024
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	142, 436, 541
TaiI	ACGT	1 cut(s)	1072
TaqI	TCGA	2 cut(s)	591, 832
TasI	AATT	3 cut(s)	4, 201, 891
TfiI	GAWTC	3 cut(s)	179, 655, 1015
Tru1I	TTAA	4 cut(s)	347, 414, 603, 888
Tru9I	TTAA	4 cut(s)	347, 414, 603, 888
TscAI	CASTG	2 cut(s)	544, 580
TseFI	GTSAC	3 cut(s)	12, 205, 866
Tsp45I	GTSAC	3 cut(s)	12, 205, 866
TspDTI	ATGAA	2 cut(s)	17, 1055
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	544, 580
Vha464I	CTTAAG	1 cut(s)	346
VpaK11BI	GGWCC	4 cut(s)	120, 295, 560, 990
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XhoI	CTCGAG	1 cut(s)	831
XmaJI	CCTAGG	1 cut(s)	115
XspI	CTAG	2 cut(s)	116, 402
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.