Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009304

Physical Location & Seq

Genomic Coordinates Forward (+)

13127156 .. 13133858

Gene Structure 6703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022838

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAATTCCTCCTCACTGATGTTGCGTCAGTTCTTGTGCTTCAATGCCTCGCCTCCATCTGCTTCTTCTTCTATTCGATGCTTCTCTTCCAACAGGAATAGGATGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTCTCTGCAACTGTTCTTGATGCCCTGCTGAATGCATCTGGTGCCCCAGATTCTCTGTTTGAGGTTGCAGCAATTGTGACTCAACCACCTTCCAGGAAGAATAGGGGGAAGAAGGTGCTGCCGTCTCCTTTAGCACAACATGCTCTTGACAGAGGCTTTCCTTCAGACCTCATTTTCACACCTGCACGAGCTGGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGCAGCCAGAACTTTGCATCACTGCTGCATATGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTCGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCGTGCACTGGATGCTGGACCTGTGATAGCCAGTCAAAGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTGCTCTCCTGTTTTCTGAAGGATCCAAACTATTGATTCACCAGCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCGCAGTCCCAGGATGACTCTAAAGCTACATTAGCCCCAAAGATTTCTCCTGAGGAGTCATGGCTATCATTTGATCAGGAAGCTGTAGTCCTACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACAACAAAAATGGTCACCGCAATATACTGGAGCTTAAAATTATCACAACCAAAGTTTGCGGCCAAAGCAATATTCATGTCAACCAAGCAGATGAGATCTCTTTTCGAAAGGGTGCATTAGTATTCCCCTGTGGTGGGTCCACATCACTTGAGGTGCTGGAGATTCAGCTTTCTGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko00970 map00670 map00970

Pfam Domains

Protein Families

Formyl_trans_C Formyl_trans_N

Protein Analysis

369

Amino Acids

39.7

Weight (kDa)

9.3

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	38 - 219	1.3e-31	Formyl transferase
Formyl_trans_C	PF02911	248 - 357	1.1e-16	Formyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66520 AT1G66520
fragaria_vesca	FvH4_2g04020
malus_domestica	MD09G1260600.v1.1
prunus_persica	Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1
pyrus_communis	pycom09g17510
rosa_chinensis	RchiOBHm_Chr3g0491591 RchiOBHm_Chr3g0493551
rosa_laevigata	RLG00000022705 RLG00000022838
rosa_multiflora	Rmu_sc0000927.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392850
rosa_rugosa	Rorug03G0250000
rosa_samantha	Rh3AG299300 Rh3AG311200 Rh3BG335300 Rh3BG347100 Rh3CG345200 Rh3DG347400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	2 cut(s)	173, 610
AciI	CCGC	2 cut(s)	874, 915
AclWI	GGATC	2 cut(s)	639, 652
AcoI	YGGCCR	1 cut(s)	916
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	279, 660
AfiI	CCNNNNNNNGG	5 cut(s)	430, 431, 553, 989, 990
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	43, 491
AjnI	CCWGG	3 cut(s)	224, 711, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	912, 944
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	139, 261
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	639, 652
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	2 cut(s)	824, 916
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	8 cut(s)	200, 250, 361, 383, 460, 479, 1049, 1052
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	2 cut(s)	563, 993
AsuHPI	GGTGA	2 cut(s)	653, 863
AsuII	TTCGAA	1 cut(s)	961
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	2 cut(s)	563, 993
AxyI	CCTNAGG	2 cut(s)	129, 753
BaeGI	GKGCMC	3 cut(s)	178, 437, 553
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BamHI	GGATCC	1 cut(s)	644
BanI	GGYRCC	2 cut(s)	173, 610
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	8 cut(s)	212, 237, 370, 373, 447, 491, 1039, 1061
BccI	CCATC	4 cut(s)	64, 500, 677, 816
BceAI	ACGGC	2 cut(s)	238, 448
BciT130I	CCWGG	3 cut(s)	226, 713, 828
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	2 cut(s)	598, 775
BcoDI	GTCTC	2 cut(s)	139, 261
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	786
BfrI	CTTAAG	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	951
BisI	GCNGC	9 cut(s)	201, 251, 362, 384, 461, 480, 916, 1050, 1053
BlsI	GCNGC	9 cut(s)	202, 252, 363, 385, 462, 481, 917, 1051, 1054
Bme1390I	CCNGG	3 cut(s)	226, 713, 828
Bme18I	GGWCC	2 cut(s)	563, 993
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	2 cut(s)	563, 993
BmiI	GGNNCC	4 cut(s)	175, 612, 646, 994
BmrFI	CCNGG	3 cut(s)	226, 713, 828
BmsI	GCATC	6 cut(s)	68, 93, 142, 176, 384, 547
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	3 cut(s)	345, 905, 1034
Bpu10I	CCTNAGC	1 cut(s)	532
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	1 cut(s)	1025
BsaAI	YACGTR	1 cut(s)	1073
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	5 cut(s)	430, 431, 553, 989, 990
Bse1I	ACTGG	4 cut(s)	558, 576, 591, 888
Bse21I	CCTNAGG	2 cut(s)	129, 753
BseBI	CCWGG	3 cut(s)	226, 713, 828
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	5 cut(s)	108, 511, 562, 721, 827
BseLI	CCNNNNNNNGG	5 cut(s)	430, 431, 553, 989, 990
BseMII	CTCAG	2 cut(s)	143, 744
BseNI	ACTGG	4 cut(s)	558, 576, 591, 888
BseRI	GAGGAG	2 cut(s)	117, 770
BseSI	GKGCMC	3 cut(s)	178, 437, 553
BseXI	GCAGC	8 cut(s)	212, 237, 370, 373, 447, 491, 1039, 1061
BsgI	GTGCAG	2 cut(s)	300, 498
BshFI	GGCC	2 cut(s)	826, 918
BshNI	GGYRCC	2 cut(s)	173, 610
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	834
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	5 cut(s)	430, 431, 553, 989, 990
BsmAI	GTCTC	2 cut(s)	139, 261
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	694
BsmI	GAATGC	2 cut(s)	169, 1051
BsnI	GGCC	2 cut(s)	826, 918
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	834
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	3 cut(s)	178, 437, 553
Bsp143I	GATC	4 cut(s)	598, 644, 775, 951
BspACI	CCGC	2 cut(s)	874, 915
BspANI	GGCC	2 cut(s)	826, 918
BspCNI	CTCAG	2 cut(s)	142, 745
BspLI	GGNNCC	4 cut(s)	175, 612, 646, 994
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	639, 652
BspT104I	TTCGAA	1 cut(s)	961
BspT107I	GGYRCC	2 cut(s)	173, 610
BspTI	CTTAAG	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	139
BsrI	ACTGG	4 cut(s)	558, 576, 591, 888
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	4 cut(s)	598, 644, 775, 951
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	226, 713, 828
Bst4CI	ACNGT	4 cut(s)	145, 439, 544, 1067
Bst6I	CTCTTC	1 cut(s)	91
BstAFI	CTTAAG	1 cut(s)	349
BstAPI	GCANNNNNTGC	3 cut(s)	173, 272, 557
BstBAI	YACGTR	1 cut(s)	1073
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	4 cut(s)	118, 129, 532, 753
BstEII	GGTNACC	1 cut(s)	869
BstF5I	GGATG	5 cut(s)	108, 511, 562, 721, 827
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	4 cut(s)	601, 647, 778, 954
BstMAI	GTCTC	2 cut(s)	139, 261
BstMBI	GATC	4 cut(s)	598, 644, 775, 951
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 272, 557, 734, 921
BstNI	CCWGG	3 cut(s)	226, 713, 828
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	869
BstSCI	CCNGG	3 cut(s)	224, 711, 826
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	3 cut(s)	178, 437, 553
BstV1I	GCAGC	8 cut(s)	212, 237, 370, 373, 447, 491, 1039, 1061
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	2 cut(s)	644, 951
BstYI	RGATCY	2 cut(s)	644, 951
Bsu36I	CCTNAGG	2 cut(s)	129, 753
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	826, 918
BtsCI	GGATG	5 cut(s)	108, 511, 562, 721, 827
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	14, 378, 551
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	624
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	563, 993
CseI	GACGC	1 cut(s)	14
CspCI	CAANNNNNGTGG	2 cut(s)	985, 1020
CviAII	CATG	3 cut(s)	272, 762, 932
DdeI	CTNAG	4 cut(s)	118, 129, 532, 753
DpnI	GATC	4 cut(s)	600, 646, 777, 953
DpnII	GATC	4 cut(s)	598, 644, 775, 951
EaeI	YGGCCR	1 cut(s)	916
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	563, 993
Eco57I	CTGAAG	2 cut(s)	279, 660
Eco81I	CCTNAGG	2 cut(s)	129, 753
Eco88I	CYCGRG	1 cut(s)	834
Eco91I	GGTNACC	1 cut(s)	869
EcoO65I	GGTNACC	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	224, 711, 826
EcoT22I	ATGCAT	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	3 cut(s)	275, 765, 935
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	3 cut(s)	271, 761, 931
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	2 cut(s)	598, 775
Fnu4HI	GCNGC	9 cut(s)	201, 251, 362, 384, 461, 480, 916, 1050, 1053
FokI	GGATG	5 cut(s)	115, 518, 569, 728, 834
Fsp4HI	GCNGC	9 cut(s)	201, 251, 362, 384, 461, 480, 916, 1050, 1053
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	705
GluI	GCNGC	9 cut(s)	201, 251, 362, 384, 461, 480, 916, 1050, 1053
GsuI	CTGGAG	3 cut(s)	345, 905, 1034
HaeIII	GGCC	2 cut(s)	826, 918
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	706
Hin1II	CATG	3 cut(s)	275, 765, 935
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HincII	GTYRAC	3 cut(s)	856, 937, 1079
HindII	GTYRAC	3 cut(s)	856, 937, 1079
HinfI	GANTC	6 cut(s)	182, 211, 658, 719, 758, 1018
HphI	GGTGA	2 cut(s)	653, 863
Hpy166II	GTNNAC	6 cut(s)	551, 856, 937, 996, 1070, 1079
Hpy188I	TCNGA	2 cut(s)	298, 640
Hpy188III	TCNNGA	6 cut(s)	149, 278, 424, 752, 779, 1060
Hpy8I	GTNNAC	6 cut(s)	551, 856, 937, 996, 1070, 1079
HpyAV	CCTTC	7 cut(s)	231, 238, 303, 635, 681, 1030, 1066
HpyCH4III	ACNGT	4 cut(s)	145, 439, 544, 1067
HpyCH4IV	ACGT	1 cut(s)	1072
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 272, 557, 734, 921
HpyF3I	CTNAG	4 cut(s)	118, 129, 532, 753
HpySE526I	ACGT	1 cut(s)	1072
Hsp92II	CATG	3 cut(s)	275, 765, 935
HspAI	GCGC	1 cut(s)	704
Ksp22I	TGATCA	2 cut(s)	598, 775
Kzo9I	GATC	4 cut(s)	598, 644, 775, 951
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	8 cut(s)	212, 237, 370, 373, 447, 491, 1039, 1061
LweI	GCATC	6 cut(s)	68, 93, 142, 176, 384, 547
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	1072
MaeIII	GTNAC	2 cut(s)	208, 869
MalI	GATC	4 cut(s)	600, 646, 777, 953
MboI	GATC	4 cut(s)	598, 644, 775, 951
MboII	GAAGA	6 cut(s)	57, 60, 78, 106, 241, 253
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	2 cut(s)	644, 951
MhlI	GDGCHC	3 cut(s)	178, 437, 553
MluCI	AATT	6 cut(s)	4, 204, 591, 603, 695, 894
MlyI	GAGTC	3 cut(s)	205, 713, 767
MmeI	TCCRAC	1 cut(s)	114
Mph1103I	ATGCAT	1 cut(s)	169
MseI	TTAA	6 cut(s)	350, 417, 606, 698, 891, 1086
MspA1I	CMGCKG	1 cut(s)	1052
MspCI	CTTAAG	1 cut(s)	349
MspR9I	CCNGG	3 cut(s)	226, 713, 828
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	2 cut(s)	169, 1051
MvaI	CCWGG	3 cut(s)	226, 713, 828
MwoI	GCNNNNNNNGC	5 cut(s)	173, 272, 557, 734, 921
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	598, 644, 775, 951
NlaIII	CATG	3 cut(s)	275, 765, 935
NlaIV	GGNNCC	4 cut(s)	175, 612, 646, 994
NmuCI	GTSAC	2 cut(s)	208, 869
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	961
PaeR7I	CTCGAG	1 cut(s)	834
PaqCI	CACCTGC	1 cut(s)	322
PctI	GAATGC	2 cut(s)	169, 1051
PfeI	GAWTC	3 cut(s)	182, 658, 1018
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	9 cut(s)	202, 252, 363, 385, 462, 481, 917, 1051, 1054
PleI	GAGTC	3 cut(s)	205, 713, 766
PpsI	GAGTC	3 cut(s)	205, 713, 766
Ppu21I	YACGTR	1 cut(s)	1073
Psp6I	CCWGG	3 cut(s)	224, 711, 826
PspEI	GGTNACC	1 cut(s)	869
PspGI	CCWGG	3 cut(s)	224, 711, 826
PspN4I	GGNNCC	4 cut(s)	175, 612, 646, 994
PspPI	GGNCC	2 cut(s)	563, 993
PspXI	VCTCGAGB	1 cut(s)	834
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	644, 951
PvuII	CAGCTG	1 cut(s)	1052
SaqAI	TTAA	6 cut(s)	350, 417, 606, 698, 891, 1086
SatI	GCNGC	9 cut(s)	201, 251, 362, 384, 461, 480, 916, 1050, 1053
Sau3AI	GATC	4 cut(s)	598, 644, 775, 951
Sau96I	GGNCC	2 cut(s)	563, 993
SchI	GAGTC	3 cut(s)	205, 713, 767
ScrFI	CCNGG	3 cut(s)	226, 713, 828
SduI	GDGCHC	3 cut(s)	178, 437, 553
SfaNI	GCATC	6 cut(s)	68, 93, 142, 176, 384, 547
SfcI	CTRYAG	1 cut(s)	786
Sfr274I	CTCGAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	961
SinI	GGWCC	2 cut(s)	563, 993
SlaI	CTCGAG	1 cut(s)	834
SmlI	CTYRAG	3 cut(s)	349, 834, 1004
SmoI	CTYRAG	3 cut(s)	349, 834, 1004
Sse9I	AATT	6 cut(s)	4, 204, 591, 603, 695, 894
SsiI	CCGC	2 cut(s)	874, 915
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	3 cut(s)	224, 711, 826
TaaI	ACNGT	4 cut(s)	145, 439, 544, 1067
TaiI	ACGT	1 cut(s)	1075
TaqI	TCGA	3 cut(s)	76, 835, 961
TasI	AATT	6 cut(s)	4, 204, 591, 603, 695, 894
TauI	GCSGC	1 cut(s)	918
TfiI	GAWTC	3 cut(s)	182, 658, 1018
Tru1I	TTAA	6 cut(s)	350, 417, 606, 698, 891, 1086
Tru9I	TTAA	6 cut(s)	350, 417, 606, 698, 891, 1086
TscAI	CASTG	3 cut(s)	21, 385, 558
TseFI	GTSAC	2 cut(s)	208, 869
TseI	GCWGC	8 cut(s)	200, 250, 361, 383, 460, 479, 1049, 1052
Tsp45I	GTSAC	2 cut(s)	208, 869
TspDTI	ATGAA	3 cut(s)	17, 920, 1058
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	3 cut(s)	21, 385, 558
Vha464I	CTTAAG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	2 cut(s)	563, 993
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XhoI	CTCGAG	1 cut(s)	834
XspI	CTAG	1 cut(s)	405
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.