Rorug03G0250000

Methionyl-trna

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009304
Physical Location & Seq
Forward (+)
23576686 .. 23579045
2360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0250000.1

Sequence Viewer

Length: 357 bp
ATGGAGAATGGTGTGGTTTCAGTTCGTATCTCGGAGGCTCCTTTCCTCGGTGGTCTAGAACGCTGCAAGACAAACCTTGTGGGCAAGTGGAGTAGGTCCTGTACTTGGCATAATGTTTTGGTAATGATTAATTACAGAGGCGCTTACCATTTTTTTGGACTCAAATGTCCCAGCATGGCTTGCTATCTTTGCTGCAGTCATCCTTGTACTTTCTTTTACGAAGGTTCCTCACTAATTCTTATCTTTGGGAAGAGGCTCCACCAATTCATTCCGCTTCCTTGCATTTTGGTTACCTCCTCCATGTATCTAACCTTCTGTATAGTTCTGTTAGTTGCAACAGTTAAAGGCCAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
Formyl_trans_C Formyl_trans_N

Protein Analysis

118

Amino Acids

13.25

Weight (kDa)

8.94

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
AciI CCGC 1 cut(s) 272
AfaI GTAC 2 cut(s) 103, 208
AfiI CCNNNNNNNGG 2 cut(s) 47, 105
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 63, 192
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 96
AvaII GGWCC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbvI GCAGC 2 cut(s) 50, 179
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 2 cut(s) 64, 193
BlsI GCNGC 2 cut(s) 65, 194
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 3 cut(s) 39, 226, 257
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 105
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 47, 105
BseRI GAGGAG 1 cut(s) 286
BseXI GCAGC 2 cut(s) 50, 179
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 47, 105
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 1 cut(s) 348
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 39, 226, 257
BspMAI CTGCAG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 181
BstEII GGTNACC 1 cut(s) 289
BstF5I GGATG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstMWI GCNNNNNNNGC 2 cut(s) 180, 189
BstPI GGTNACC 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 50, 179
BstXI CCANNNNNNTGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 102, 207
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 2 cut(s) 175, 301
CviJI RGCY 4 cut(s) 38, 179, 256, 348
CviKI_1 RGCY 4 cut(s) 38, 179, 256, 348
CviQI GTAC 2 cut(s) 102, 207
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 96
EcoO65I GGTNACC 1 cut(s) 289
FaeI CATG 2 cut(s) 178, 304
FaiI YATR 4 cut(s) 111, 176, 302, 320
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 174, 300
Fnu4HI GCNGC 2 cut(s) 64, 193
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 64, 193
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 64, 193
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 348
HhaI GCGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 178, 304
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 56, 354
HpyAV CCTTC 2 cut(s) 215, 322
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 66, 195, 282, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 189
Hsp92II CATG 2 cut(s) 178, 304
HspAI GCGC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 43, 261
LpnPI CCDG 2 cut(s) 112, 184
Lsp1109I GCAGC 2 cut(s) 50, 179
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 289
MboII GAAGA 1 cut(s) 262
MluCI AATT 3 cut(s) 130, 234, 263
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 7 cut(s) 28, 56, 131, 238, 246, 304, 307
MseI TTAA 2 cut(s) 129, 342
MwoI GCNNNNNNNGC 2 cut(s) 180, 189
NlaIII CATG 2 cut(s) 178, 304
NlaIV GGNNCC 3 cut(s) 39, 226, 257
PkrI GCNGC 2 cut(s) 65, 194
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PpuMI RGGWCCY 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 96
PspEI GGTNACC 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 39, 226, 257
PspPI GGNCC 1 cut(s) 96
PspPPI RGGWCCY 1 cut(s) 96
PstI CTGCAG 1 cut(s) 197
RsaI GTAC 2 cut(s) 103, 208
RsaNI GTAC 2 cut(s) 102, 207
SaqAI TTAA 2 cut(s) 129, 342
SatI GCNGC 2 cut(s) 64, 193
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 153
SetI ASST 5 cut(s) 78, 98, 226, 296, 314
SfcI CTRYAG 1 cut(s) 193
SinI GGWCC 1 cut(s) 96
Sse9I AATT 3 cut(s) 130, 234, 263
SsiI CCGC 1 cut(s) 272
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 340
TasI AATT 3 cut(s) 130, 234, 263
TatI WGTACW 2 cut(s) 101, 206
Tru1I TTAA 2 cut(s) 129, 342
Tru9I TTAA 2 cut(s) 129, 342
TseI GCWGC 2 cut(s) 63, 192
TspDTI ATGAA 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 96
VspI ATTAAT 1 cut(s) 129
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.