Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009304

Physical Location & Seq

Genomic Coordinates Reverse (-)

16616504 .. 16623669

Gene Structure 7166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G152400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAATTCGTCACTAGTGTTTCGTCGCTTCTGGTGCTTCAATGCCGCAACTTCATCTTCTTCTACTCTATGCTTCGCTTCCAACAAGAAGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTATCTGCAACTGTTCTTGATGCCCTTCTCAACGCATCCACTGCTCCGGACTCTTTGTTTGAGGTTGCAGCAATTGTTACTCAGCCGCCATCCAGAAAGTCTAGGGGGAAAAAGTTGATGCCTTCTCCTTTAGCACAGCATGCTCTTGACAGAGGCTTCCCTTCCAACCTTATTTTTACTCCTGAACGGGCTGGAGAGGATGTGTTCTTATCCAACTTAAGAGATTTGCAGCCAGAACTTTGCATTACTGCTGCATATGGGAATATTTTACCTAGCAAGTTTCTAAATATCCCAACATCGGGCACGGTCAATATACACCCAAGTCTTCTGCCATTATATCGTGGTGCTGCACCCGTTCAAAGAGCCTTGCAGGACGGTGTTAAAGAAACAGGAGTATCCTTAGCATTCACTGTCCGTGCACTGGATGCTGGACCTGTCATTGCCTGTGAAAGAATGGAAATTGAAGATCAAATTAAGGCACCGGAGCTACTTGATTTGCTATTTTATGAAGGATCTAAACTATTGATTCGTGAGCTTCCTTCTATATTTGATGGATCGGCTAAAGTGAAAGCACAGCCCCAGGATGACTCCAAAGCTACCTTAGCTCCCAAGATTGCTTCTGAGGAGTCGTGGCTATCTTTTGATGAGGAAGCTCCAGTCCTACATAATAAGGTTCGTGCCTTTGCAGGGTGGCCTGGAACTCGAGCTAAAGTTGTAATTGTTGACAACAAAAGTGGTCAAGACAAAATCACGGAGCTTAAAATTATCACCACGAAAGTTTGCAGCCGTAGCAATATTCAGGTCAATCAAGCAGATGAGATCACTTTTATAAAGCCTGCACTAGTATTTCCATGTGGAGGGGGCACAGCCCTTGAGGTGTTGGAGATTCAGCTTCCAGGTAAGAAGGTAATGAGTGCAGCTGCCTTCTGGAATGGTGTACGTGGTCAAAAGCTGAAGATATTAAGTGCTGCTTATGAAAACGATCATTTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko00970 map00670 map00970

Pfam Domains

Protein Families

Formyl_trans_C Formyl_trans_N

Protein Analysis

371

Amino Acids

40.12

Weight (kDa)

8.44

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66520 AT1G66520
fragaria_vesca	FvH4_2g04020
malus_domestica	MD09G1260600.v1.1
prunus_persica	Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1
pyrus_communis	pycom09g17510
rosa_chinensis	RchiOBHm_Chr3g0491591 RchiOBHm_Chr3g0493551
rosa_laevigata	RLG00000022705 RLG00000022838
rosa_multiflora	Rmu_sc0000927.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392850
rosa_rugosa	Rorug03G0250000
rosa_samantha	Rh3AG299300 Rh3AG311200 Rh3BG335300 Rh3BG347100 Rh3CG345200 Rh3DG347400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	947
AccB1I	GGYRCC	1 cut(s)	595
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	2 cut(s)	45, 203
AclWI	GGATC	2 cut(s)	637, 679
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	1091
AfaI	GTAC	1 cut(s)	1056
AfiI	CCNNNNNNNGG	5 cut(s)	415, 416, 538, 804, 974
AflII	CTTAAG	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	40, 476, 581
AhlI	ACTAGT	2 cut(s)	13, 958
AjnI	CCWGG	3 cut(s)	696, 811, 1012
Alw21I	GWGCWC	1 cut(s)	538
Alw44I	GTGCAC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	637, 679
Ama87I	CYCGRG	1 cut(s)	819
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	809
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	8 cut(s)	185, 346, 368, 464, 900, 1034, 1037, 1085
ApoI	RAATTY	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	877
AvaI	CYCGRG	1 cut(s)	819
AvaII	GGWCC	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	3 cut(s)	422, 538, 983
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanI	GGYRCC	1 cut(s)	595
BbsI	GAAGAC	2 cut(s)	91, 434
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	8 cut(s)	197, 355, 358, 451, 912, 1024, 1046, 1072
BccI	CCATC	2 cut(s)	214, 662
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	3 cut(s)	698, 813, 1014
BciVI	GTATCC	1 cut(s)	523
BcuI	ACTAGT	2 cut(s)	13, 958
BfaI	CTAG	4 cut(s)	14, 219, 390, 959
BfrI	CTTAAG	1 cut(s)	334
BfuI	GTATCC	1 cut(s)	523
Bme1390I	CCNGG	3 cut(s)	698, 813, 1014
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	819
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	3 cut(s)	698, 813, 1014
BmsI	GCATC	4 cut(s)	127, 161, 225, 532
BpiI	GAAGAC	2 cut(s)	91, 434
BpmI	CTGGAG	2 cut(s)	330, 756
Bpu10I	CCTNAGC	2 cut(s)	517, 718
BpuEI	CTTGAG	1 cut(s)	1010
BsaAI	YACGTR	1 cut(s)	1058
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	2 cut(s)	163, 598
BsaXI	ACNNNNNCTCC	4 cut(s)	303, 333, 706, 736
Bsc4I	CCNNNNNNNGG	5 cut(s)	415, 416, 538, 804, 974
Bse1I	ACTGG	2 cut(s)	543, 773
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	3 cut(s)	698, 813, 1014
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	5 cut(s)	152, 206, 322, 547, 706
BseLI	CCNNNNNNNGG	5 cut(s)	415, 416, 538, 804, 974
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	128, 212, 729
BseNI	ACTGG	2 cut(s)	543, 773
BseRI	GAGGAG	2 cut(s)	102, 755
BseSI	GKGCMC	3 cut(s)	422, 538, 983
BseXI	GCAGC	8 cut(s)	197, 355, 358, 451, 912, 1024, 1046, 1072
BsgI	GTGCAG	3 cut(s)	450, 939, 1053
BshFI	GGCC	1 cut(s)	811
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	538
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	164, 599
BslI	CCNNNNNNNGG	5 cut(s)	415, 416, 538, 804, 974
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	811
BsoBI	CYCGRG	1 cut(s)	819
Bsp1286I	GDGCHC	3 cut(s)	422, 538, 983
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	5 cut(s)	583, 629, 671, 936, 1099
BspACI	CCGC	2 cut(s)	45, 203
BspANI	GGCC	1 cut(s)	811
BspCNI	CTCAG	3 cut(s)	127, 211, 730
BspEI	TCCGGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	637, 679
BspT107I	GGYRCC	1 cut(s)	595
BspTI	CTTAAG	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	543, 773
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	5 cut(s)	583, 629, 671, 936, 1099
Bst2UI	CCWGG	3 cut(s)	698, 813, 1014
Bst4CI	ACNGT	4 cut(s)	130, 424, 494, 529
BstAFI	CTTAAG	1 cut(s)	334
BstAPI	GCANNNNNTGC	3 cut(s)	158, 257, 542
BstBAI	YACGTR	1 cut(s)	1058
BstC8I	GCNNGC	2 cut(s)	258, 954
BstDEI	CTNAG	6 cut(s)	103, 114, 198, 517, 718, 738
BstF5I	GGATG	5 cut(s)	152, 206, 322, 547, 706
BstKTI	GATC	5 cut(s)	586, 632, 674, 939, 1102
BstMBI	GATC	5 cut(s)	583, 629, 671, 936, 1099
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 158, 257, 542, 719, 906
BstNI	CCWGG	3 cut(s)	698, 813, 1014
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	696, 811, 1012
BstSLI	GKGCMC	3 cut(s)	422, 538, 983
BstV1I	GCAGC	8 cut(s)	197, 355, 358, 451, 912, 1024, 1046, 1072
BstV2I	GAAGAC	2 cut(s)	91, 434
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
Bsu36I	CCTNAGG	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	811
BtsCI	GGATG	5 cut(s)	152, 206, 322, 547, 706
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	156, 525, 536
Cac8I	GCNNGC	2 cut(s)	258, 954
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	1055
CspCI	CAANNNNNGTGG	2 cut(s)	832, 867
CviAII	CATG	2 cut(s)	257, 969
CviQI	GTAC	1 cut(s)	1055
DdeI	CTNAG	6 cut(s)	103, 114, 198, 517, 718, 738
DpnI	GATC	5 cut(s)	585, 631, 673, 938, 1101
DpnII	GATC	5 cut(s)	583, 629, 671, 936, 1099
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	1091
Eco81I	CCTNAGG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	819
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	696, 811, 1012
FaeI	CATG	2 cut(s)	260, 972
FalI	AAGNNNNNCTT	2 cut(s)	1072, 1104
FatI	CATG	2 cut(s)	256, 968
FauNDI	CATATG	1 cut(s)	373
FokI	GGATG	5 cut(s)	139, 193, 329, 554, 713
FspBI	CTAG	4 cut(s)	14, 219, 390, 959
GsuI	CTGGAG	2 cut(s)	330, 756
HaeIII	GGCC	1 cut(s)	811
HapII	CCGG	2 cut(s)	164, 599
Hin1II	CATG	2 cut(s)	260, 972
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	5 cut(s)	167, 643, 704, 743, 1003
HpaII	CCGG	2 cut(s)	164, 599
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	3 cut(s)	536, 841, 1055
Hpy188I	TCNGA	1 cut(s)	739
Hpy188III	TCNNGA	8 cut(s)	134, 164, 210, 263, 299, 647, 857, 1045
Hpy8I	GTNNAC	3 cut(s)	536, 841, 1055
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	7 cut(s)	152, 249, 288, 620, 666, 1015, 1051
HpyCH4III	ACNGT	4 cut(s)	130, 424, 494, 529
HpyCH4IV	ACGT	1 cut(s)	1057
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 158, 257, 542, 719, 906
HpyF3I	CTNAG	6 cut(s)	103, 114, 198, 517, 718, 738
HpySE526I	ACGT	1 cut(s)	1057
Hsp92II	CATG	2 cut(s)	260, 972
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	583, 629, 671, 936, 1099
LmnI	GCTCC	5 cut(s)	166, 601, 727, 775, 871
Lsp1109I	GCAGC	8 cut(s)	197, 355, 358, 451, 912, 1024, 1046, 1072
LweI	GCATC	4 cut(s)	127, 161, 225, 532
MaeI	CTAG	4 cut(s)	14, 219, 390, 959
MaeII	ACGT	1 cut(s)	1057
MaeIII	GTNAC	2 cut(s)	9, 193
MalI	GATC	5 cut(s)	585, 631, 673, 938, 1101
MboI	GATC	5 cut(s)	583, 629, 671, 936, 1099
MboII	GAAGA	6 cut(s)	48, 51, 91, 434, 593, 1084
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	3 cut(s)	422, 538, 983
MluCI	AATT	6 cut(s)	4, 189, 576, 588, 834, 879
MlyI	GAGTC	3 cut(s)	161, 698, 752
MmeI	TCCRAC	4 cut(s)	105, 306, 354, 978
MnlI	CCTC	9 cut(s)	104, 123, 172, 263, 307, 733, 757, 968, 985
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	5 cut(s)	335, 498, 591, 876, 1079
MspA1I	CMGCKG	1 cut(s)	1037
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	2 cut(s)	164, 599
MspR9I	CCNGG	3 cut(s)	698, 813, 1014
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	3 cut(s)	698, 813, 1014
MwoI	GCNNNNNNNGC	6 cut(s)	33, 158, 257, 542, 719, 906
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	5 cut(s)	583, 629, 671, 936, 1099
NlaIII	CATG	2 cut(s)	260, 972
NlaIV	GGNNCC	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	819
PctI	GAATGC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	643, 1003
PleI	GAGTC	3 cut(s)	161, 698, 751
PpsI	GAGTC	3 cut(s)	161, 698, 751
Ppu21I	YACGTR	1 cut(s)	1058
PsiI	TTATAA	1 cut(s)	947
Psp6I	CCWGG	3 cut(s)	696, 811, 1012
PspGI	CCWGG	3 cut(s)	696, 811, 1012
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	548
PspXI	VCTCGAGB	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	1037
RsaI	GTAC	1 cut(s)	1056
RsaNI	GTAC	1 cut(s)	1055
SaqAI	TTAA	5 cut(s)	335, 498, 591, 876, 1079
Sau3AI	GATC	5 cut(s)	583, 629, 671, 936, 1099
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	3 cut(s)	161, 698, 752
ScrFI	CCNGG	3 cut(s)	698, 813, 1014
SduI	GDGCHC	3 cut(s)	422, 538, 983
SfaNI	GCATC	4 cut(s)	127, 161, 225, 532
Sfr274I	CTCGAG	1 cut(s)	819
SinI	GGWCC	1 cut(s)	548
SlaI	CTCGAG	1 cut(s)	819
SmlI	CTYRAG	3 cut(s)	334, 819, 989
SmoI	CTYRAG	3 cut(s)	334, 819, 989
SpeI	ACTAGT	2 cut(s)	13, 958
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	6 cut(s)	4, 189, 576, 588, 834, 879
SsiI	CCGC	2 cut(s)	45, 203
SspI	AATATT	2 cut(s)	382, 913
SspMI	CTAG	4 cut(s)	14, 219, 390, 959
StyD4I	CCNGG	3 cut(s)	696, 811, 1012
TaaI	ACNGT	4 cut(s)	130, 424, 494, 529
TaiI	ACGT	1 cut(s)	1060
TaqI	TCGA	1 cut(s)	820
TasI	AATT	6 cut(s)	4, 189, 576, 588, 834, 879
TauI	GCSGC	2 cut(s)	47, 205
TfiI	GAWTC	2 cut(s)	643, 1003
Tru1I	TTAA	5 cut(s)	335, 498, 591, 876, 1079
Tru9I	TTAA	5 cut(s)	335, 498, 591, 876, 1079
TscAI	CASTG	3 cut(s)	163, 532, 543
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	8 cut(s)	185, 346, 368, 464, 900, 1034, 1037, 1085
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	4 cut(s)	17, 42, 639, 1107
TspGWI	ACGGA	2 cut(s)	521, 884
TspRI	CASTG	3 cut(s)	163, 532, 543
Vha464I	CTTAAG	1 cut(s)	334
VneI	GTGCAC	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	819
XspI	CTAG	4 cut(s)	14, 219, 390, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.