Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009304

Physical Location & Seq

Genomic Coordinates Reverse (-)

35569864 .. 35578318

Gene Structure 8455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG335300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAATTCCTCCTCACTGATGTTGCGTCAGTTCTTGTGCTTCAATGCCTCGCCTCCATCTGCTTCTTCTATTCTATGCTTCTCTTCCAACAGGAATAGGAAGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTCTCTGCAACTGTTCTTGACGCCCTGCTGAATGCATCCGGTGCCCCAGATTCTCTGTTTGAGGTTGCAGCAATTGTGACTCAACCACCTTCCAGGAAGAATAGGGGGAAGAAGGTGCTGCCGTCTCCTTTAGCACAACATGCTCTTGACAGAGGCTTTCCTTCAGACCTCATTTTCACACCTGCACGAGCTAGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGCAGCCAGAACTTTGCATCACTGCCGCATATGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCGTGCGCTGGATGCTGGACCTGTGATAGCCAGTCAAAGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTGCTCTCCTATTTTCTGAAGGATCCAAACTATTGATTCACCAGCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCGCAGTCCCAGGATGACTCTAAAGCTACATTAGCTCCAAAGATTTCTCCTGAGGAGTCATGGCTATCATTTGATCAGGAAGCTGTAGTCCTACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACAACAAAAATGGTCACCGCAATATACTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCAAAGCAATATTCATGTCAACCAAGCAGATGACATCTCTTTTCGAAAGGGTGCATTAGTATTCCCCTGTGGTGGGTCCACATCACTTGAGGTGCTGGAGATTCAGCTTCCTGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko00970 map00670 map00970

Pfam Domains

Protein Families

Formyl_trans_C Formyl_trans_N

Protein Analysis

367

Amino Acids

39.71

Weight (kDa)

9.38

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	38 - 218	3.9e-32	Formyl transferase
Formyl_trans_C	PF02911	247 - 356	4.2e-17	Formyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66520 AT1G66520
fragaria_vesca	FvH4_2g04020
malus_domestica	MD09G1260600.v1.1
prunus_persica	Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1
pyrus_communis	pycom09g17510
rosa_chinensis	RchiOBHm_Chr3g0491591 RchiOBHm_Chr3g0493551
rosa_laevigata	RLG00000022705 RLG00000022838
rosa_multiflora	Rmu_sc0000927.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392850
rosa_rugosa	Rorug03G0250000
rosa_samantha	Rh3AG299300 Rh3AG311200 Rh3BG335300 Rh3BG347100 Rh3CG345200 Rh3DG347400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
AccB1I	GGYRCC	2 cut(s)	170, 607
AciI	CCGC	2 cut(s)	381, 871
AclWI	GGATC	2 cut(s)	636, 649
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	276, 657
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	6 cut(s)	387, 427, 428, 550, 986, 987
AflII	CTTAAG	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	43, 488
AjnI	CCWGG	4 cut(s)	221, 708, 823, 1024
AjuI	GAANNNNNNNTTGG	2 cut(s)	909, 941
Alw26I	GTCTC	2 cut(s)	136, 258
AlwI	GGATC	2 cut(s)	636, 649
AlwNI	CAGNNNCTG	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	1 cut(s)	821
ApeKI	GCWGC	8 cut(s)	197, 247, 358, 457, 476, 912, 1046, 1049
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	550, 703
AspS9I	GGNCC	2 cut(s)	560, 990
AsuHPI	GGTGA	2 cut(s)	650, 860
AsuII	TTCGAA	1 cut(s)	958
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	2 cut(s)	560, 990
AxyI	CCTNAGG	2 cut(s)	126, 750
BaeGI	GKGCMC	2 cut(s)	175, 434
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BamHI	GGATCC	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	170, 607
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	8 cut(s)	209, 234, 370, 444, 488, 924, 1036, 1058
BccI	CCATC	4 cut(s)	64, 497, 674, 813
BceAI	ACGGC	2 cut(s)	235, 445
BciT130I	CCWGG	4 cut(s)	223, 710, 825, 1026
BciVI	GTATCC	1 cut(s)	535
BclI	TGATCA	2 cut(s)	595, 772
BcoDI	GTCTC	2 cut(s)	136, 258
BfaI	CTAG	2 cut(s)	321, 402
BfmI	CTRYAG	1 cut(s)	783
BfrI	CTTAAG	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	9 cut(s)	198, 248, 359, 381, 458, 477, 913, 1047, 1050
BlsI	GCNGC	9 cut(s)	199, 249, 360, 382, 459, 478, 914, 1048, 1051
Bme1390I	CCNGG	4 cut(s)	223, 710, 825, 1026
Bme18I	GGWCC	2 cut(s)	560, 990
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	2 cut(s)	560, 990
BmiI	GGNNCC	4 cut(s)	172, 609, 643, 991
BmrFI	CCNGG	4 cut(s)	223, 710, 825, 1026
BmsI	GCATC	3 cut(s)	173, 381, 544
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	2 cut(s)	902, 1031
Bpu10I	CCTNAGC	1 cut(s)	529
Bpu14I	TTCGAA	1 cut(s)	958
BpuEI	CTTGAG	1 cut(s)	1022
BsaAI	YACGTR	1 cut(s)	1070
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	6 cut(s)	387, 427, 428, 550, 986, 987
Bse1I	ACTGG	3 cut(s)	573, 588, 885
Bse21I	CCTNAGG	2 cut(s)	126, 750
BseBI	CCWGG	4 cut(s)	223, 710, 825, 1026
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	5 cut(s)	164, 508, 559, 718, 824
BseLI	CCNNNNNNNGG	6 cut(s)	387, 427, 428, 550, 986, 987
BseMII	CTCAG	2 cut(s)	140, 741
BseNI	ACTGG	3 cut(s)	573, 588, 885
BseRI	GAGGAG	2 cut(s)	114, 767
BseSI	GKGCMC	2 cut(s)	175, 434
BseXI	GCAGC	8 cut(s)	209, 234, 370, 444, 488, 924, 1036, 1058
BsgI	GTGCAG	2 cut(s)	297, 495
BshFI	GGCC	1 cut(s)	823
BshNI	GGYRCC	2 cut(s)	170, 607
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	6 cut(s)	387, 427, 428, 550, 986, 987
BsmAI	GTCTC	2 cut(s)	136, 258
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	2 cut(s)	166, 1048
BsnI	GGCC	1 cut(s)	823
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	831
Bsp119I	TTCGAA	1 cut(s)	958
Bsp1286I	GDGCHC	2 cut(s)	175, 434
Bsp143I	GATC	3 cut(s)	595, 641, 772
BspACI	CCGC	2 cut(s)	381, 871
BspANI	GGCC	1 cut(s)	823
BspCNI	CTCAG	2 cut(s)	139, 742
BspLI	GGNNCC	4 cut(s)	172, 609, 643, 991
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	636, 649
BspT104I	TTCGAA	1 cut(s)	958
BspT107I	GGYRCC	2 cut(s)	170, 607
BspTI	CTTAAG	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	573, 588, 885
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	3 cut(s)	595, 641, 772
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	4 cut(s)	223, 710, 825, 1026
Bst4CI	ACNGT	4 cut(s)	142, 436, 541, 1064
Bst6I	CTCTTC	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	346
BstAPI	GCANNNNNTGC	2 cut(s)	170, 269
BstBAI	YACGTR	1 cut(s)	1070
BstBI	TTCGAA	1 cut(s)	958
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	4 cut(s)	115, 126, 529, 750
BstEII	GGTNACC	1 cut(s)	866
BstF5I	GGATG	5 cut(s)	164, 508, 559, 718, 824
BstHHI	GCGC	2 cut(s)	550, 703
BstKTI	GATC	3 cut(s)	598, 644, 775
BstMAI	GTCTC	2 cut(s)	136, 258
BstMBI	GATC	3 cut(s)	595, 641, 772
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 269, 554, 731, 918
BstNI	CCWGG	4 cut(s)	223, 710, 825, 1026
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	866
BstSCI	CCNGG	4 cut(s)	221, 708, 823, 1024
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	2 cut(s)	175, 434
BstV1I	GCAGC	8 cut(s)	209, 234, 370, 444, 488, 924, 1036, 1058
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
Bsu36I	CCTNAGG	2 cut(s)	126, 750
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	823
BtsCI	GGATG	5 cut(s)	164, 508, 559, 718, 824
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	14, 375
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	2 cut(s)	550, 703
Cfr13I	GGNCC	2 cut(s)	560, 990
CseI	GACGC	2 cut(s)	14, 158
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	3 cut(s)	269, 759, 929
DdeI	CTNAG	4 cut(s)	115, 126, 529, 750
DpnI	GATC	3 cut(s)	597, 643, 774
DpnII	GATC	3 cut(s)	595, 641, 772
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	560, 990
Eco57I	CTGAAG	2 cut(s)	276, 657
Eco81I	CCTNAGG	2 cut(s)	126, 750
Eco88I	CYCGRG	1 cut(s)	831
Eco91I	GGTNACC	1 cut(s)	866
EcoO65I	GGTNACC	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	4 cut(s)	221, 708, 823, 1024
EcoT22I	ATGCAT	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	272, 762, 932
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	3 cut(s)	268, 758, 928
FauNDI	CATATG	1 cut(s)	385
FbaI	TGATCA	2 cut(s)	595, 772
Fnu4HI	GCNGC	9 cut(s)	198, 248, 359, 381, 458, 477, 913, 1047, 1050
FokI	GGATG	5 cut(s)	151, 515, 566, 725, 831
Fsp4HI	GCNGC	9 cut(s)	198, 248, 359, 381, 458, 477, 913, 1047, 1050
FspBI	CTAG	2 cut(s)	321, 402
GlaI	GCGC	2 cut(s)	549, 702
GluI	GCNGC	9 cut(s)	198, 248, 359, 381, 458, 477, 913, 1047, 1050
GsuI	CTGGAG	2 cut(s)	902, 1031
HaeIII	GGCC	1 cut(s)	823
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	2 cut(s)	14, 158
HhaI	GCGC	2 cut(s)	550, 703
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	272, 762, 932
Hin6I	GCGC	2 cut(s)	548, 701
HinP1I	GCGC	2 cut(s)	548, 701
HincII	GTYRAC	3 cut(s)	853, 934, 1076
HindII	GTYRAC	3 cut(s)	853, 934, 1076
HinfI	GANTC	6 cut(s)	179, 208, 655, 716, 755, 1015
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	650, 860
Hpy166II	GTNNAC	5 cut(s)	853, 934, 993, 1067, 1076
Hpy188I	TCNGA	2 cut(s)	295, 637
Hpy188III	TCNNGA	6 cut(s)	146, 275, 421, 749, 776, 1057
Hpy8I	GTNNAC	5 cut(s)	853, 934, 993, 1067, 1076
HpyAV	CCTTC	7 cut(s)	228, 235, 300, 632, 678, 1027, 1063
HpyCH4III	ACNGT	4 cut(s)	142, 436, 541, 1064
HpyCH4IV	ACGT	1 cut(s)	1069
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 269, 554, 731, 918
HpyF3I	CTNAG	4 cut(s)	115, 126, 529, 750
HpySE526I	ACGT	1 cut(s)	1069
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	272, 762, 932
HspAI	GCGC	2 cut(s)	548, 701
Ksp22I	TGATCA	2 cut(s)	595, 772
Kzo9I	GATC	3 cut(s)	595, 641, 772
LmnI	GCTCC	2 cut(s)	739, 883
Lsp1109I	GCAGC	8 cut(s)	209, 234, 370, 444, 488, 924, 1036, 1058
LweI	GCATC	3 cut(s)	173, 381, 544
MaeI	CTAG	2 cut(s)	321, 402
MaeII	ACGT	1 cut(s)	1069
MaeIII	GTNAC	2 cut(s)	205, 866
MalI	GATC	3 cut(s)	597, 643, 774
MboI	GATC	3 cut(s)	595, 641, 772
MboII	GAAGA	5 cut(s)	57, 75, 103, 238, 250
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	2 cut(s)	175, 434
MluCI	AATT	6 cut(s)	4, 201, 588, 600, 692, 891
MlyI	GAGTC	3 cut(s)	202, 710, 764
MmeI	TCCRAC	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	7 cut(s)	347, 414, 603, 695, 888, 1083, 1102
MspA1I	CMGCKG	1 cut(s)	1049
MspCI	CTTAAG	1 cut(s)	346
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	4 cut(s)	223, 710, 825, 1026
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	2 cut(s)	166, 1048
MvaI	CCWGG	4 cut(s)	223, 710, 825, 1026
MwoI	GCNNNNNNNGC	5 cut(s)	170, 269, 554, 731, 918
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	3 cut(s)	595, 641, 772
NlaIII	CATG	3 cut(s)	272, 762, 932
NlaIV	GGNNCC	4 cut(s)	172, 609, 643, 991
NmuCI	GTSAC	2 cut(s)	205, 866
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	958
PaeR7I	CTCGAG	1 cut(s)	831
PaqCI	CACCTGC	1 cut(s)	319
PctI	GAATGC	2 cut(s)	166, 1048
PfeI	GAWTC	3 cut(s)	179, 655, 1015
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	9 cut(s)	199, 249, 360, 382, 459, 478, 914, 1048, 1051
PleI	GAGTC	3 cut(s)	202, 710, 763
PpsI	GAGTC	3 cut(s)	202, 710, 763
Ppu21I	YACGTR	1 cut(s)	1070
Psp6I	CCWGG	4 cut(s)	221, 708, 823, 1024
PspEI	GGTNACC	1 cut(s)	866
PspGI	CCWGG	4 cut(s)	221, 708, 823, 1024
PspN4I	GGNNCC	4 cut(s)	172, 609, 643, 991
PspPI	GGNCC	2 cut(s)	560, 990
PspXI	VCTCGAGB	1 cut(s)	831
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	1049
SaqAI	TTAA	7 cut(s)	347, 414, 603, 695, 888, 1083, 1102
SatI	GCNGC	9 cut(s)	198, 248, 359, 381, 458, 477, 913, 1047, 1050
Sau3AI	GATC	3 cut(s)	595, 641, 772
Sau96I	GGNCC	2 cut(s)	560, 990
SchI	GAGTC	3 cut(s)	202, 710, 764
ScrFI	CCNGG	4 cut(s)	223, 710, 825, 1026
SduI	GDGCHC	2 cut(s)	175, 434
SfaNI	GCATC	3 cut(s)	173, 381, 544
SfcI	CTRYAG	1 cut(s)	783
Sfr274I	CTCGAG	1 cut(s)	831
SfuI	TTCGAA	1 cut(s)	958
SinI	GGWCC	2 cut(s)	560, 990
SlaI	CTCGAG	1 cut(s)	831
SmlI	CTYRAG	3 cut(s)	346, 831, 1001
SmoI	CTYRAG	3 cut(s)	346, 831, 1001
Sse9I	AATT	6 cut(s)	4, 201, 588, 600, 692, 891
SsiI	CCGC	2 cut(s)	381, 871
SspI	AATATT	1 cut(s)	925
SspMI	CTAG	2 cut(s)	321, 402
StyD4I	CCNGG	4 cut(s)	221, 708, 823, 1024
TaaI	ACNGT	4 cut(s)	142, 436, 541, 1064
TaiI	ACGT	1 cut(s)	1072
TaqI	TCGA	2 cut(s)	832, 958
TasI	AATT	6 cut(s)	4, 201, 588, 600, 692, 891
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	179, 655, 1015
Tru1I	TTAA	7 cut(s)	347, 414, 603, 695, 888, 1083, 1102
Tru9I	TTAA	7 cut(s)	347, 414, 603, 695, 888, 1083, 1102
TscAI	CASTG	2 cut(s)	21, 382
TseFI	GTSAC	2 cut(s)	205, 866
TseI	GCWGC	8 cut(s)	197, 247, 358, 457, 476, 912, 1046, 1049
Tsp45I	GTSAC	2 cut(s)	205, 866
TspDTI	ATGAA	3 cut(s)	17, 917, 1055
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	21, 382
Vha464I	CTTAAG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	560, 990
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XhoI	CTCGAG	1 cut(s)	831
XspI	CTAG	2 cut(s)	321, 402
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.