Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009304

Physical Location & Seq

Genomic Coordinates Forward (+)

39534549 .. 39542042

Gene Structure 7494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG347400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAATTCCTCCTCACTGATGTTGCGTCGGTTCTTGTGCTTCAATGCCTCGACTGCATCTTCTTCTTCTTCTTCTATTCTATGCTTCTCCTCCAACAGGAATAGGAAGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTCTCTACAACTGTTCTTGACGCCCTGCTGAATGCATCCGGTGCCCCAGATTCTGTGTTTGAGGTTGCAGCAATTGTGACTCAACCACCTTCCAGGAAGAATAGGGGGAAGAAGGTGCTGCCGTCTCCTTTAGCACAATATGCTCTTGACAGAGGCTTTCCTTCAGACCTCATTTTCACACCTGCACGAGCTGGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGCAGCCAGAACTTTGCATCACTGCCGCATATGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCGTGCGCTGGATGCTGGACCTGTGATAGCCAGTCAAAGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTACTCTCCTATTTTCTGAAGGATCCAAACTATTGATTCACCAGCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCGCAGTCCCAGGATGACTCTAAAGCTACATTAGCTCCAAAGATTTCTCCCGAGGAGTCATGGCTATCATTTGATCAGGAAGCTGTAGTCCAACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACAACAAAAACGGTCACCGCAATATGCTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCAAAGCAATATTCAGGTCAACCAAGCAGATGACATCTCTTTTCGAAAGGGTGCATTAGTATTCCCCTGTGGCGGGTCCACATCACTTGAGGTGCTGGAGATTCAGCTTCCTGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko00970 map00670 map00970

Pfam Domains

Protein Families

Formyl_trans_C Formyl_trans_N

Protein Analysis

369

Amino Acids

39.92

Weight (kDa)

9.36

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	48 - 211	5.5e-32	Formyl transferase
Formyl_trans_C	PF02911	249 - 358	6.9e-16	Formyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66520 AT1G66520
fragaria_vesca	FvH4_2g04020
malus_domestica	MD09G1260600.v1.1
prunus_persica	Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1
pyrus_communis	pycom09g17510
rosa_chinensis	RchiOBHm_Chr3g0491591 RchiOBHm_Chr3g0493551
rosa_laevigata	RLG00000022705 RLG00000022838
rosa_multiflora	Rmu_sc0000927.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392850
rosa_rugosa	Rorug03G0250000
rosa_samantha	Rh3AG299300 Rh3AG311200 Rh3BG335300 Rh3BG347100 Rh3CG345200 Rh3DG347400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AccB1I	GGYRCC	2 cut(s)	176, 613
AciI	CCGC	3 cut(s)	387, 877, 993
AclWI	GGATC	2 cut(s)	642, 655
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	282, 663
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	7 cut(s)	96, 393, 433, 434, 556, 992, 993
AflII	CTTAAG	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	43, 494
AjnI	CCWGG	4 cut(s)	227, 714, 829, 1030
AjuI	GAANNNNNNNTTGG	2 cut(s)	915, 947
Alw26I	GTCTC	2 cut(s)	142, 264
AlwI	GGATC	2 cut(s)	642, 655
AlwNI	CAGNNNCTG	2 cut(s)	188, 488
Ama87I	CYCGRG	2 cut(s)	755, 837
AoxI	GGCC	1 cut(s)	827
ApeKI	GCWGC	8 cut(s)	203, 253, 364, 463, 482, 918, 1052, 1055
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	556, 709
AspS9I	GGNCC	2 cut(s)	566, 996
AsuHPI	GGTGA	2 cut(s)	656, 866
AsuII	TTCGAA	1 cut(s)	964
AvaI	CYCGRG	2 cut(s)	755, 837
AvaII	GGWCC	2 cut(s)	566, 996
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	2 cut(s)	181, 440
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BamHI	GGATCC	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	176, 613
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	109
BbvI	GCAGC	8 cut(s)	215, 240, 376, 450, 494, 930, 1042, 1064
BccI	CCATC	3 cut(s)	503, 680, 819
BceAI	ACGGC	2 cut(s)	241, 451
BciT130I	CCWGG	4 cut(s)	229, 716, 831, 1032
BciVI	GTATCC	1 cut(s)	541
BclI	TGATCA	2 cut(s)	601, 778
BcoDI	GTCTC	2 cut(s)	142, 264
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	789
BfrI	CTTAAG	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	9 cut(s)	204, 254, 365, 387, 464, 483, 919, 1053, 1056
BlsI	GCNGC	9 cut(s)	205, 255, 366, 388, 465, 484, 920, 1054, 1057
Bme1390I	CCNGG	4 cut(s)	229, 716, 831, 1032
Bme18I	GGWCC	2 cut(s)	566, 996
BmeT110I	CYCGRG	2 cut(s)	755, 837
BmgT120I	GGNCC	2 cut(s)	566, 996
BmiI	GGNNCC	4 cut(s)	178, 615, 649, 997
BmrFI	CCNGG	4 cut(s)	229, 716, 831, 1032
BmsI	GCATC	4 cut(s)	65, 179, 387, 550
BpiI	GAAGAC	1 cut(s)	109
BpmI	CTGGAG	3 cut(s)	348, 908, 1037
Bpu10I	CCTNAGC	1 cut(s)	535
Bpu14I	TTCGAA	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	1028
BsaAI	YACGTR	1 cut(s)	1076
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	714, 756
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	7 cut(s)	96, 393, 433, 434, 556, 992, 993
Bse1I	ACTGG	2 cut(s)	579, 594
Bse21I	CCTNAGG	1 cut(s)	132
BseBI	CCWGG	4 cut(s)	229, 716, 831, 1032
BseDI	CCNNGG	2 cut(s)	714, 756
BseGI	GGATG	5 cut(s)	170, 514, 565, 724, 830
BseLI	CCNNNNNNNGG	7 cut(s)	96, 393, 433, 434, 556, 992, 993
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	579, 594
BseRI	GAGGAG	3 cut(s)	79, 120, 773
BseSI	GKGCMC	2 cut(s)	181, 440
BseXI	GCAGC	8 cut(s)	215, 240, 376, 450, 494, 930, 1042, 1064
BsgI	GTGCAG	2 cut(s)	303, 501
BshFI	GGCC	1 cut(s)	829
BshNI	GGYRCC	2 cut(s)	176, 613
BsiHKCI	CYCGRG	2 cut(s)	755, 837
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	7 cut(s)	96, 393, 433, 434, 556, 992, 993
BsmAI	GTCTC	2 cut(s)	142, 264
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	2 cut(s)	172, 1054
BsnI	GGCC	1 cut(s)	829
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	2 cut(s)	755, 837
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	2 cut(s)	181, 440
Bsp143I	GATC	3 cut(s)	601, 647, 778
BspACI	CCGC	3 cut(s)	387, 877, 993
BspANI	GGCC	1 cut(s)	829
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	178, 615, 649, 997
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	642, 655
BspT104I	TTCGAA	1 cut(s)	964
BspT107I	GGYRCC	2 cut(s)	176, 613
BspTI	CTTAAG	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	579, 594
BssECI	CCNNGG	2 cut(s)	714, 756
BssMI	GATC	3 cut(s)	601, 647, 778
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	4 cut(s)	229, 716, 831, 1032
Bst4CI	ACNGT	5 cut(s)	148, 442, 547, 872, 1070
BstACI	GRCGYC	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	352
BstAPI	GCANNNNNTGC	2 cut(s)	176, 275
BstBAI	YACGTR	1 cut(s)	1076
BstBI	TTCGAA	1 cut(s)	964
BstDEI	CTNAG	3 cut(s)	121, 132, 535
BstEII	GGTNACC	1 cut(s)	872
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	5 cut(s)	170, 514, 565, 724, 830
BstHHI	GCGC	2 cut(s)	556, 709
BstKTI	GATC	3 cut(s)	604, 650, 781
BstMAI	GTCTC	2 cut(s)	142, 264
BstMBI	GATC	3 cut(s)	601, 647, 778
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 176, 275, 560, 737, 924
BstNI	CCWGG	4 cut(s)	229, 716, 831, 1032
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	4 cut(s)	227, 714, 829, 1030
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	2 cut(s)	181, 440
BstV1I	GCAGC	8 cut(s)	215, 240, 376, 450, 494, 930, 1042, 1064
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
Bsu36I	CCTNAGG	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	829
BtsCI	GGATG	5 cut(s)	170, 514, 565, 724, 830
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	14, 381
BveI	ACCTGC	1 cut(s)	325
CaiI	CAGNNNCTG	2 cut(s)	188, 488
CfoI	GCGC	2 cut(s)	556, 709
Cfr13I	GGNCC	2 cut(s)	566, 996
CseI	GACGC	2 cut(s)	14, 164
CspCI	CAANNNNNGTGG	2 cut(s)	988, 1023
CviAII	CATG	1 cut(s)	765
DdeI	CTNAG	3 cut(s)	121, 132, 535
DpnI	GATC	3 cut(s)	603, 649, 780
DpnII	GATC	3 cut(s)	601, 647, 778
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	2 cut(s)	566, 996
Eco57I	CTGAAG	2 cut(s)	282, 663
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	755, 837
Eco91I	GGTNACC	1 cut(s)	872
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	4 cut(s)	227, 714, 829, 1030
EcoT22I	ATGCAT	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	768
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	1 cut(s)	764
FauI	CCCGC	1 cut(s)	986
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	2 cut(s)	601, 778
Fnu4HI	GCNGC	9 cut(s)	204, 254, 365, 387, 464, 483, 919, 1053, 1056
FokI	GGATG	5 cut(s)	157, 521, 572, 731, 837
Fsp4HI	GCNGC	9 cut(s)	204, 254, 365, 387, 464, 483, 919, 1053, 1056
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	2 cut(s)	555, 708
GluI	GCNGC	9 cut(s)	204, 254, 365, 387, 464, 483, 919, 1053, 1056
GsuI	CTGGAG	3 cut(s)	348, 908, 1037
HaeIII	GGCC	1 cut(s)	829
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	2 cut(s)	14, 164
HhaI	GCGC	2 cut(s)	556, 709
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	768
Hin6I	GCGC	2 cut(s)	554, 707
HinP1I	GCGC	2 cut(s)	554, 707
HincII	GTYRAC	3 cut(s)	859, 940, 1082
HindII	GTYRAC	3 cut(s)	859, 940, 1082
HinfI	GANTC	6 cut(s)	185, 214, 661, 722, 761, 1021
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	656, 866
Hpy166II	GTNNAC	5 cut(s)	859, 940, 999, 1073, 1082
Hpy188I	TCNGA	2 cut(s)	301, 643
Hpy188III	TCNNGA	6 cut(s)	152, 281, 427, 755, 782, 1063
Hpy8I	GTNNAC	5 cut(s)	859, 940, 999, 1073, 1082
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	7 cut(s)	234, 241, 306, 638, 684, 1033, 1069
HpyCH4III	ACNGT	5 cut(s)	148, 442, 547, 872, 1070
HpyCH4IV	ACGT	1 cut(s)	1075
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 176, 275, 560, 737, 924
HpyF3I	CTNAG	3 cut(s)	121, 132, 535
HpySE526I	ACGT	1 cut(s)	1075
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	768
HspAI	GCGC	2 cut(s)	554, 707
Ksp22I	TGATCA	2 cut(s)	601, 778
Kzo9I	GATC	3 cut(s)	601, 647, 778
LmnI	GCTCC	2 cut(s)	745, 889
Lsp1109I	GCAGC	8 cut(s)	215, 240, 376, 450, 494, 930, 1042, 1064
LweI	GCATC	4 cut(s)	65, 179, 387, 550
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	1075
MaeIII	GTNAC	2 cut(s)	211, 872
MalI	GATC	3 cut(s)	603, 649, 780
MboI	GATC	3 cut(s)	601, 647, 778
MboII	GAAGA	8 cut(s)	51, 54, 57, 60, 63, 109, 244, 256
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	2 cut(s)	181, 440
MluCI	AATT	6 cut(s)	4, 207, 594, 606, 698, 897
MlyI	GAGTC	3 cut(s)	208, 716, 770
MmeI	TCCRAC	2 cut(s)	117, 820
Mph1103I	ATGCAT	1 cut(s)	172
MseI	TTAA	6 cut(s)	353, 420, 609, 701, 894, 1089
MspA1I	CMGCKG	1 cut(s)	1055
MspCI	CTTAAG	1 cut(s)	352
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	4 cut(s)	229, 716, 831, 1032
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	2 cut(s)	172, 1054
MvaI	CCWGG	4 cut(s)	229, 716, 831, 1032
MwoI	GCNNNNNNNGC	6 cut(s)	53, 176, 275, 560, 737, 924
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	3 cut(s)	601, 647, 778
NlaIII	CATG	1 cut(s)	768
NlaIV	GGNNCC	4 cut(s)	178, 615, 649, 997
NmuCI	GTSAC	2 cut(s)	211, 872
NsiI	ATGCAT	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	964
PaeR7I	CTCGAG	1 cut(s)	837
PaqCI	CACCTGC	1 cut(s)	325
PctI	GAATGC	2 cut(s)	172, 1054
PfeI	GAWTC	3 cut(s)	185, 661, 1021
PfoI	TCCNGGA	1 cut(s)	227
PkrI	GCNGC	9 cut(s)	205, 255, 366, 388, 465, 484, 920, 1054, 1057
PleI	GAGTC	3 cut(s)	208, 716, 769
PpsI	GAGTC	3 cut(s)	208, 716, 769
Ppu21I	YACGTR	1 cut(s)	1076
Psp6I	CCWGG	4 cut(s)	227, 714, 829, 1030
PspEI	GGTNACC	1 cut(s)	872
PspGI	CCWGG	4 cut(s)	227, 714, 829, 1030
PspN4I	GGNNCC	4 cut(s)	178, 615, 649, 997
PspPI	GGNCC	2 cut(s)	566, 996
PspXI	VCTCGAGB	1 cut(s)	837
PstNI	CAGNNNCTG	2 cut(s)	188, 488
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	1055
SaqAI	TTAA	6 cut(s)	353, 420, 609, 701, 894, 1089
SatI	GCNGC	9 cut(s)	204, 254, 365, 387, 464, 483, 919, 1053, 1056
Sau3AI	GATC	3 cut(s)	601, 647, 778
Sau96I	GGNCC	2 cut(s)	566, 996
SchI	GAGTC	3 cut(s)	208, 716, 770
ScrFI	CCNGG	4 cut(s)	229, 716, 831, 1032
SduI	GDGCHC	2 cut(s)	181, 440
SfaNI	GCATC	4 cut(s)	65, 179, 387, 550
SfcI	CTRYAG	1 cut(s)	789
Sfr274I	CTCGAG	1 cut(s)	837
SfuI	TTCGAA	1 cut(s)	964
SinI	GGWCC	2 cut(s)	566, 996
SlaI	CTCGAG	1 cut(s)	837
SmlI	CTYRAG	3 cut(s)	352, 837, 1007
SmoI	CTYRAG	3 cut(s)	352, 837, 1007
Sse9I	AATT	6 cut(s)	4, 207, 594, 606, 698, 897
SsiI	CCGC	3 cut(s)	387, 877, 993
SspI	AATATT	1 cut(s)	931
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	4 cut(s)	227, 714, 829, 1030
TaaI	ACNGT	5 cut(s)	148, 442, 547, 872, 1070
TaiI	ACGT	1 cut(s)	1078
TaqI	TCGA	3 cut(s)	50, 838, 964
TasI	AATT	6 cut(s)	4, 207, 594, 606, 698, 897
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	185, 661, 1021
Tru1I	TTAA	6 cut(s)	353, 420, 609, 701, 894, 1089
Tru9I	TTAA	6 cut(s)	353, 420, 609, 701, 894, 1089
TscAI	CASTG	2 cut(s)	21, 388
TseFI	GTSAC	2 cut(s)	211, 872
TseI	GCWGC	8 cut(s)	203, 253, 364, 463, 482, 918, 1052, 1055
Tsp45I	GTSAC	2 cut(s)	211, 872
TspDTI	ATGAA	2 cut(s)	17, 1061
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	2 cut(s)	21, 388
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	2 cut(s)	566, 996
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XhoI	CTCGAG	1 cut(s)	837
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.