Rh3CG345200

Methionyl-trna

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009304
Physical Location & Seq
Forward (+)
39169624 .. 39176987
7364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG345200.1

Sequence Viewer

Length: 1116 bp
ATGAATTCCTCCTCACTGATGTTGCGTCGGTTCTTGTGCTTCAATGCCTCGACTGCATCTTCTTCTTCTTCTGCTTCTTCTATTCTATGCTTCTCCTCCAACAGGAATAGGAAGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTCTCTACAACTGTTCTTGACGCCCTGCTGAATGCATCCGGTGCCCCAGATTCTGTGTTTGAGGTTGCAGCAATTGTGACTCAACCACCTTCCAGGAAGAATAGGGGGAAGAAGGTGCTGCCGTCTCCTTTAGCACAATATGCTCTTGACAGAGGCTTTCCTTCAGACCTCATTTTCACACCTGCACGAGCTGGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGCAGCCAGAACTTTGCATCACTGCCGCATATGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCGTGCGCTGGATGCTGGACCTGTGATAGCCAGTCAAAGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTACTCTCCTATTTTCTGAAGGATCCAAACTATTGATTCACCAGCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCACAGTCCCAGGATGACTCTAAAGCTACATTAGCTCCAAAGATTTCTCCTGAGGAGTCATGGCTATCATTTGATCAGGAAGCTGTAGTCCAACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACAACAAAAACGGTCACCGCAATATGCTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCAAAGCAATATTCAGGTCAACCAAGCGGATGACATCTCTTTTCGAAAGGGTGCATTAGTATTCCCCTGTGGCGGGTCCACATCACTTGAGGTGCTGGAGATTCAGCTTCCTGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko00970 map00670 map00970
Pfam Domains
Protein Families
Formyl_trans_C Formyl_trans_N

Protein Analysis

371

Amino Acids

40.07

Weight (kDa)

9.36

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 50 - 213 5.6e-32 Formyl transferase
Formyl_trans_C PF02911 251 - 360 6.9e-16 Formyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AccB1I GGYRCC 2 cut(s) 182, 619
AciI CCGC 4 cut(s) 393, 883, 953, 999
AclWI GGATC 2 cut(s) 648, 661
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 288, 669
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 7 cut(s) 102, 399, 439, 440, 562, 998, 999
AflII CTTAAG 1 cut(s) 358
AgsI TTSAA 2 cut(s) 43, 500
AjnI CCWGG 4 cut(s) 233, 720, 835, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
Alw26I GTCTC 2 cut(s) 148, 270
AlwI GGATC 2 cut(s) 648, 661
AlwNI CAGNNNCTG 2 cut(s) 194, 494
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 1 cut(s) 833
ApeKI GCWGC 8 cut(s) 209, 259, 370, 469, 488, 924, 1058, 1061
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 2 cut(s) 572, 1002
AsuHPI GGTGA 2 cut(s) 662, 872
AsuII TTCGAA 1 cut(s) 970
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 2 cut(s) 572, 1002
AxyI CCTNAGG 2 cut(s) 138, 762
BaeGI GKGCMC 2 cut(s) 187, 446
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BamHI GGATCC 1 cut(s) 653
BanI GGYRCC 2 cut(s) 182, 619
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 115
BbvI GCAGC 8 cut(s) 221, 246, 382, 456, 500, 936, 1048, 1070
BccI CCATC 3 cut(s) 509, 686, 825
BceAI ACGGC 2 cut(s) 247, 457
BciT130I CCWGG 4 cut(s) 235, 722, 837, 1038
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 2 cut(s) 607, 784
BcoDI GTCTC 2 cut(s) 148, 270
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 795
BfrI CTTAAG 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 9 cut(s) 210, 260, 371, 393, 470, 489, 925, 1059, 1062
BlsI GCNGC 9 cut(s) 211, 261, 372, 394, 471, 490, 926, 1060, 1063
Bme1390I CCNGG 4 cut(s) 235, 722, 837, 1038
Bme18I GGWCC 2 cut(s) 572, 1002
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 2 cut(s) 572, 1002
BmiI GGNNCC 4 cut(s) 184, 621, 655, 1003
BmrFI CCNGG 4 cut(s) 235, 722, 837, 1038
BmsI GCATC 4 cut(s) 65, 185, 393, 556
BpiI GAAGAC 1 cut(s) 115
BpmI CTGGAG 3 cut(s) 354, 914, 1043
Bpu10I CCTNAGC 1 cut(s) 541
Bpu14I TTCGAA 1 cut(s) 970
BpuEI CTTGAG 1 cut(s) 1034
BsaAI YACGTR 1 cut(s) 1082
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 720
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 7 cut(s) 102, 399, 439, 440, 562, 998, 999
Bse1I ACTGG 2 cut(s) 585, 600
Bse21I CCTNAGG 2 cut(s) 138, 762
BseBI CCWGG 4 cut(s) 235, 722, 837, 1038
BseDI CCNNGG 1 cut(s) 720
BseGI GGATG 6 cut(s) 176, 520, 571, 730, 836, 961
BseLI CCNNNNNNNGG 7 cut(s) 102, 399, 439, 440, 562, 998, 999
BseMII CTCAG 2 cut(s) 152, 753
BseNI ACTGG 2 cut(s) 585, 600
BseRI GAGGAG 3 cut(s) 85, 126, 779
BseSI GKGCMC 2 cut(s) 187, 446
BseXI GCAGC 8 cut(s) 221, 246, 382, 456, 500, 936, 1048, 1070
BsgI GTGCAG 2 cut(s) 309, 507
BshFI GGCC 1 cut(s) 835
BshNI GGYRCC 2 cut(s) 182, 619
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 7 cut(s) 102, 399, 439, 440, 562, 998, 999
BsmAI GTCTC 2 cut(s) 148, 270
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 703
BsmI GAATGC 2 cut(s) 178, 1060
BsnI GGCC 1 cut(s) 835
Bso31I GGTCTC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 843
Bsp119I TTCGAA 1 cut(s) 970
Bsp1286I GDGCHC 2 cut(s) 187, 446
Bsp143I GATC 3 cut(s) 607, 653, 784
BspACI CCGC 4 cut(s) 393, 883, 953, 999
BspANI GGCC 1 cut(s) 835
BspCNI CTCAG 2 cut(s) 151, 754
BspLI GGNNCC 4 cut(s) 184, 621, 655, 1003
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 2 cut(s) 648, 661
BspT104I TTCGAA 1 cut(s) 970
BspT107I GGYRCC 2 cut(s) 182, 619
BspTI CTTAAG 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 148
BsrI ACTGG 2 cut(s) 585, 600
BssECI CCNNGG 1 cut(s) 720
BssMI GATC 3 cut(s) 607, 653, 784
BssNI GRCGYC 1 cut(s) 162
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
Bst2UI CCWGG 4 cut(s) 235, 722, 837, 1038
Bst4CI ACNGT 6 cut(s) 154, 448, 553, 717, 878, 1076
BstACI GRCGYC 1 cut(s) 162
BstAFI CTTAAG 1 cut(s) 358
BstAPI GCANNNNNTGC 2 cut(s) 182, 281
BstBAI YACGTR 1 cut(s) 1082
BstBI TTCGAA 1 cut(s) 970
BstDEI CTNAG 4 cut(s) 127, 138, 541, 762
BstEII GGTNACC 1 cut(s) 878
BstENI CCTNNNNNAGG 1 cut(s) 100
BstF5I GGATG 6 cut(s) 176, 520, 571, 730, 836, 961
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 3 cut(s) 610, 656, 787
BstMAI GTCTC 2 cut(s) 148, 270
BstMBI GATC 3 cut(s) 607, 653, 784
BstMWI GCNNNNNNNGC 6 cut(s) 53, 182, 281, 566, 743, 930
BstNI CCWGG 4 cut(s) 235, 722, 837, 1038
BstPI GGTNACC 1 cut(s) 878
BstSCI CCNGG 4 cut(s) 233, 720, 835, 1036
BstSFI CTRYAG 1 cut(s) 795
BstSLI GKGCMC 2 cut(s) 187, 446
BstV1I GCAGC 8 cut(s) 221, 246, 382, 456, 500, 936, 1048, 1070
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
Bsu36I CCTNAGG 2 cut(s) 138, 762
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 1 cut(s) 835
BtsCI GGATG 6 cut(s) 176, 520, 571, 730, 836, 961
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 14, 387
BveI ACCTGC 1 cut(s) 331
CaiI CAGNNNCTG 2 cut(s) 194, 494
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 2 cut(s) 572, 1002
CseI GACGC 2 cut(s) 14, 170
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviAII CATG 1 cut(s) 771
DdeI CTNAG 4 cut(s) 127, 138, 541, 762
DpnI GATC 3 cut(s) 609, 655, 786
DpnII GATC 3 cut(s) 607, 653, 784
Eco31I GGTCTC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 572, 1002
Eco57I CTGAAG 2 cut(s) 288, 669
Eco81I CCTNAGG 2 cut(s) 138, 762
Eco88I CYCGRG 1 cut(s) 843
Eco91I GGTNACC 1 cut(s) 878
EcoNI CCTNNNNNAGG 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 233, 720, 835, 1036
EcoT22I ATGCAT 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 1 cut(s) 774
FaqI GGGAC 1 cut(s) 703
FatI CATG 1 cut(s) 770
FauI CCCGC 1 cut(s) 992
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 2 cut(s) 607, 784
Fnu4HI GCNGC 9 cut(s) 210, 260, 371, 393, 470, 489, 925, 1059, 1062
FokI GGATG 6 cut(s) 163, 527, 578, 737, 843, 968
Fsp4HI GCNGC 9 cut(s) 210, 260, 371, 393, 470, 489, 925, 1059, 1062
FspBI CTAG 1 cut(s) 414
GlaI GCGC 1 cut(s) 561
GluI GCNGC 9 cut(s) 210, 260, 371, 393, 470, 489, 925, 1059, 1062
GsuI CTGGAG 3 cut(s) 354, 914, 1043
HaeIII GGCC 1 cut(s) 835
HapII CCGG 1 cut(s) 180
HgaI GACGC 2 cut(s) 14, 170
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 1 cut(s) 774
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 3 cut(s) 865, 946, 1088
HindII GTYRAC 3 cut(s) 865, 946, 1088
HinfI GANTC 6 cut(s) 191, 220, 667, 728, 767, 1027
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 662, 872
Hpy166II GTNNAC 5 cut(s) 865, 946, 1005, 1079, 1088
Hpy188I TCNGA 2 cut(s) 307, 649
Hpy188III TCNNGA 6 cut(s) 158, 287, 433, 761, 788, 1069
Hpy8I GTNNAC 5 cut(s) 865, 946, 1005, 1079, 1088
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 7 cut(s) 240, 247, 312, 644, 690, 1039, 1075
HpyCH4III ACNGT 6 cut(s) 154, 448, 553, 717, 878, 1076
HpyCH4IV ACGT 1 cut(s) 1081
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 182, 281, 566, 743, 930
HpyF3I CTNAG 4 cut(s) 127, 138, 541, 762
HpySE526I ACGT 1 cut(s) 1081
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 1 cut(s) 774
HspAI GCGC 1 cut(s) 560
Ksp22I TGATCA 2 cut(s) 607, 784
Kzo9I GATC 3 cut(s) 607, 653, 784
LmnI GCTCC 2 cut(s) 751, 895
Lsp1109I GCAGC 8 cut(s) 221, 246, 382, 456, 500, 936, 1048, 1070
LweI GCATC 4 cut(s) 65, 185, 393, 556
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 1081
MaeIII GTNAC 2 cut(s) 217, 878
MalI GATC 3 cut(s) 609, 655, 786
MboI GATC 3 cut(s) 607, 653, 784
MboII GAAGA 8 cut(s) 51, 54, 57, 60, 69, 115, 250, 262
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 2 cut(s) 187, 446
MluCI AATT 6 cut(s) 4, 213, 600, 612, 704, 903
MlyI GAGTC 3 cut(s) 214, 722, 776
MmeI TCCRAC 2 cut(s) 123, 826
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 6 cut(s) 359, 426, 615, 707, 900, 1095
MspA1I CMGCKG 1 cut(s) 1061
MspCI CTTAAG 1 cut(s) 358
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 4 cut(s) 235, 722, 837, 1038
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 2 cut(s) 178, 1060
MvaI CCWGG 4 cut(s) 235, 722, 837, 1038
MwoI GCNNNNNNNGC 6 cut(s) 53, 182, 281, 566, 743, 930
NdeI CATATG 1 cut(s) 397
NdeII GATC 3 cut(s) 607, 653, 784
NlaIII CATG 1 cut(s) 774
NlaIV GGNNCC 4 cut(s) 184, 621, 655, 1003
NmuCI GTSAC 2 cut(s) 217, 878
NsiI ATGCAT 1 cut(s) 178
NspV TTCGAA 1 cut(s) 970
PaeR7I CTCGAG 1 cut(s) 843
PaqCI CACCTGC 1 cut(s) 331
PctI GAATGC 2 cut(s) 178, 1060
PfeI GAWTC 3 cut(s) 191, 667, 1027
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 9 cut(s) 211, 261, 372, 394, 471, 490, 926, 1060, 1063
PleI GAGTC 3 cut(s) 214, 722, 775
PpsI GAGTC 3 cut(s) 214, 722, 775
Ppu21I YACGTR 1 cut(s) 1082
Psp6I CCWGG 4 cut(s) 233, 720, 835, 1036
PspEI GGTNACC 1 cut(s) 878
PspGI CCWGG 4 cut(s) 233, 720, 835, 1036
PspN4I GGNNCC 4 cut(s) 184, 621, 655, 1003
PspPI GGNCC 2 cut(s) 572, 1002
PspXI VCTCGAGB 1 cut(s) 843
PstNI CAGNNNCTG 2 cut(s) 194, 494
PsuI RGATCY 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 1061
SaqAI TTAA 6 cut(s) 359, 426, 615, 707, 900, 1095
SatI GCNGC 9 cut(s) 210, 260, 371, 393, 470, 489, 925, 1059, 1062
Sau3AI GATC 3 cut(s) 607, 653, 784
Sau96I GGNCC 2 cut(s) 572, 1002
SchI GAGTC 3 cut(s) 214, 722, 776
ScrFI CCNGG 4 cut(s) 235, 722, 837, 1038
SduI GDGCHC 2 cut(s) 187, 446
SfaNI GCATC 4 cut(s) 65, 185, 393, 556
SfcI CTRYAG 1 cut(s) 795
Sfr274I CTCGAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 970
SinI GGWCC 2 cut(s) 572, 1002
SlaI CTCGAG 1 cut(s) 843
SmlI CTYRAG 3 cut(s) 358, 843, 1013
SmoI CTYRAG 3 cut(s) 358, 843, 1013
Sse9I AATT 6 cut(s) 4, 213, 600, 612, 704, 903
SsiI CCGC 4 cut(s) 393, 883, 953, 999
SspI AATATT 1 cut(s) 937
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 233, 720, 835, 1036
TaaI ACNGT 6 cut(s) 154, 448, 553, 717, 878, 1076
TaiI ACGT 1 cut(s) 1084
TaqI TCGA 3 cut(s) 50, 844, 970
TasI AATT 6 cut(s) 4, 213, 600, 612, 704, 903
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 3 cut(s) 191, 667, 1027
Tru1I TTAA 6 cut(s) 359, 426, 615, 707, 900, 1095
Tru9I TTAA 6 cut(s) 359, 426, 615, 707, 900, 1095
TscAI CASTG 2 cut(s) 21, 394
TseFI GTSAC 2 cut(s) 217, 878
TseI GCWGC 8 cut(s) 209, 259, 370, 469, 488, 924, 1058, 1061
Tsp45I GTSAC 2 cut(s) 217, 878
TspDTI ATGAA 2 cut(s) 17, 1067
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 2 cut(s) 21, 394
Vha464I CTTAAG 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 572, 1002
XagI CCTNNNNNAGG 1 cut(s) 100
XapI RAATTY 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XhoI CTCGAG 1 cut(s) 843
XspI CTAG 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.