Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009304

Physical Location & Seq

Genomic Coordinates Reverse (-)

33343498 .. 33349411

Gene Structure 5914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1260600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAATTCGTCGCTGGTGTTTCGTCGCTTCTGGTGCTTCAGTGCCGCAACTTCATCTTCATCTTCTTCTTCTTCTACCTTATGCTTCGCTTCCAACAAGAAGCCCCTCGTCTTCTTAGGCTCTCCTCAGGTGTCATCAACTGTTCTGGATGCCCTTCTCAATGCATCCACTGCCGCAGACTCACTCTTTGAGGTTGCAGCTATTGTTACACAGCCACCATCCAGAAAGTCTAGGGGGAAAAAGTTGATGCCTTCTCCTTTAGCACAGCATGCTCTTGACAGAGGCTTCCCTTCAAACCTTATTTTCACACCTGAACGGGCTGGAGAGGAAGTGTTTTTGTCCGACTTAAGAGCTTTGCAGCCACAACTTTGCATCACTGCTGCTTATGGGAACATTTTACCTACCAAGTTTCTCAATATCCCAACATTGGGTACGGTCAATATACACCCAAGTTTGCTTCCATTGTATCGTGGAGCTGCACCTGTTCAAAGAGCCTTGCAGGATGGTGTTAATGAAACAGGAGTATCCTTAGCGTTCACTGTTCGTGCACTGGATGCTGGGCCTGTCATTGCCTGTGAAAGAATGGAAATTGATGATCAAATTAAGGCACCGGATCTACTTGCACTACTATTTAATGAAGGATCTAAACTATTGATCAACGAGCTTCCTTCTATATTTGATGGGTCAGCTAAGGTGAAAGCACGTCCCCAGGATGACTCTAAAGCTACCTTAGCTCCCAAGATTGCTCAGGAAGAATCGTGGCTGTCCTTTGATCAGGAGGCTTCAGTTCTACATAATAAGATTCGTGCATTTGCAGGGTGGCCTGGAACTCGAGCTAAAGTTGTAATTATTGACAACAAAACTGGTCAAGAGAATATCATGGAATTCAAAATTATGACAACTAAAGTCTGCAGCCAGAGCAATGTTCAGGTCAACCAAGCGGATGAAATCACCTTTATAAAGCCTGCATTAGTATTTCCCTGTGGATGGGGCACAGCGCTTGAGGTATTGGAGGTTCAGATTCCGGGTAAGAAGGCAATAAGTGCAGCTGCCTTCTGGAATGGTTTGCGTGGTCAAAAACTGAAGATATACCGTGCTTCCAATGTAAACGGTAATTCTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko00970 map00670 map00970

Pfam Domains

Protein Families

Formyl_trans_C Formyl_trans_N

Protein Analysis

375

Amino Acids

40.39

Weight (kDa)

8.97

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	38 - 218	3.4e-31	Formyl transferase
Formyl_trans_C	PF02911	247 - 356	3.9e-15	Formyl transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66520 AT1G66520
fragaria_vesca	FvH4_2g04020
malus_domestica	MD09G1260600.v1.1
prunus_persica	Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1
pyrus_communis	pycom09g17510
rosa_chinensis	RchiOBHm_Chr3g0491591 RchiOBHm_Chr3g0493551
rosa_laevigata	RLG00000022705 RLG00000022838
rosa_multiflora	Rmu_sc0000927.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392850
rosa_rugosa	Rorug03G0250000
rosa_samantha	Rh3AG299300 Rh3AG311200 Rh3BG335300 Rh3BG347100 Rh3CG345200 Rh3DG347400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	959
AccB1I	GGYRCC	1 cut(s)	607
AciI	CCGC	3 cut(s)	45, 174, 941
AclWI	GGATC	2 cut(s)	621, 649
AcsI	RAATTY	2 cut(s)	4, 884
AcuI	CTGAAG	3 cut(s)	22, 768, 1103
AfaI	GTAC	1 cut(s)	433
AfeI	AGCGCT	1 cut(s)	999
AfiI	CCNNNNNNNGG	3 cut(s)	427, 428, 987
AflII	CTTAAG	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	294, 488, 889
AjiI	CACGTC	1 cut(s)	704
AjnI	CCWGG	2 cut(s)	708, 823
AluBI	AGCT	9 cut(s)	200, 353, 476, 664, 689, 725, 734, 836, 1049
AluI	AGCT	9 cut(s)	200, 353, 476, 664, 689, 725, 734, 836, 1049
Alw21I	GWGCWC	1 cut(s)	550
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	621, 649
Ama87I	CYCGRG	1 cut(s)	831
Aor51HI	AGCGCT	1 cut(s)	999
AoxI	GGCC	2 cut(s)	560, 821
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	7 cut(s)	197, 358, 380, 476, 912, 1046, 1049
ApoI	RAATTY	2 cut(s)	4, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	1000
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	1026
AsuHPI	GGTGA	2 cut(s)	706, 943
AvaI	CYCGRG	1 cut(s)	831
AxyI	CCTNAGG	1 cut(s)	126
BaeGI	GKGCMC	2 cut(s)	550, 995
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BanI	GGYRCC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	7 cut(s)	209, 367, 370, 463, 924, 1036, 1058
BccI	CCATC	4 cut(s)	226, 497, 674, 981
BciT130I	CCWGG	2 cut(s)	710, 825
BciVI	GTATCC	1 cut(s)	535
BclI	TGATCA	3 cut(s)	595, 654, 772
BcnI	CCSGG	1 cut(s)	1026
BfaI	CTAG	2 cut(s)	231, 1119
BfmI	CTRYAG	1 cut(s)	910
BfoI	RGCGCY	1 cut(s)	1001
BfrI	CTTAAG	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	9 cut(s)	45, 174, 198, 359, 381, 477, 913, 1047, 1050
BlsI	GCNGC	9 cut(s)	46, 175, 199, 360, 382, 478, 914, 1048, 1051
Bme1390I	CCNGG	3 cut(s)	710, 825, 1026
BmeT110I	CYCGRG	1 cut(s)	831
BmgBI	CACGTC	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	3 cut(s)	710, 825, 1026
BmsI	GCATC	5 cut(s)	139, 173, 237, 381, 544
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	4 cut(s)	529, 690, 730, 747
BpuEI	CTTGAG	1 cut(s)	1022
BpuMI	CCSGG	1 cut(s)	1026
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 718, 748
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 428, 987
Bse1I	ACTGG	2 cut(s)	555, 868
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	2 cut(s)	567, 928
BseBI	CCWGG	2 cut(s)	710, 825
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	8 cut(s)	154, 164, 218, 508, 559, 718, 949, 992
BseLI	CCNNNNNNNGG	3 cut(s)	427, 428, 987
BseMI	GCAATG	2 cut(s)	567, 928
BseMII	CTCAG	2 cut(s)	140, 761
BseNI	ACTGG	2 cut(s)	555, 868
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	2 cut(s)	550, 995
BseXI	GCAGC	7 cut(s)	209, 367, 370, 463, 924, 1036, 1058
BseYI	CCCAGC	1 cut(s)	557
BsgI	GTGCAG	2 cut(s)	462, 1065
BshFI	GGCC	2 cut(s)	562, 823
BshNI	GGYRCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	2 cut(s)	611, 1025
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	3 cut(s)	427, 428, 987
BsmFI	GGGAC	1 cut(s)	690
BsnI	GGCC	2 cut(s)	562, 823
BsoBI	CYCGRG	1 cut(s)	831
Bsp1286I	GDGCHC	2 cut(s)	550, 995
Bsp143I	GATC	5 cut(s)	595, 613, 641, 654, 772
BspACI	CCGC	3 cut(s)	45, 174, 941
BspANI	GGCC	2 cut(s)	562, 823
BspCNI	CTCAG	2 cut(s)	139, 760
BspLI	GGNNCC	1 cut(s)	609
BspMAI	CTGCAG	1 cut(s)	914
BspPI	GGATC	2 cut(s)	621, 649
BspT107I	GGYRCC	1 cut(s)	607
BspTI	CTTAAG	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	567, 928
BsrI	ACTGG	2 cut(s)	555, 868
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	5 cut(s)	595, 613, 641, 654, 772
Bst2UI	CCWGG	2 cut(s)	710, 825
Bst4CI	ACNGT	5 cut(s)	142, 436, 541, 1094, 1112
BstAFI	CTTAAG	1 cut(s)	346
BstAPI	GCANNNNNTGC	4 cut(s)	170, 269, 554, 1043
BstC8I	GCNNGC	2 cut(s)	270, 966
BstDEI	CTNAG	6 cut(s)	115, 126, 529, 690, 730, 747
BstF5I	GGATG	8 cut(s)	154, 164, 218, 508, 559, 718, 949, 992
BstH2I	RGCGCY	1 cut(s)	1001
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	5 cut(s)	598, 616, 644, 657, 775
BstMBI	GATC	5 cut(s)	595, 613, 641, 654, 772
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 170, 269, 554, 731, 918, 1043
BstNI	CCWGG	2 cut(s)	710, 825
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	708, 823, 1024
BstSFI	CTRYAG	1 cut(s)	910
BstSLI	GKGCMC	2 cut(s)	550, 995
BstV1I	GCAGC	7 cut(s)	209, 367, 370, 463, 924, 1036, 1058
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	613, 641
BstYI	RGATCY	2 cut(s)	613, 641
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	562, 823
BtrI	CACGTC	1 cut(s)	704
BtsCI	GGATG	8 cut(s)	154, 164, 218, 508, 559, 718, 949, 992
BtsI	GCAGTG	2 cut(s)	168, 375
BtsIMutI	CAGTG	5 cut(s)	46, 168, 375, 537, 548
Cac8I	GCNNGC	2 cut(s)	270, 966
CfoI	GCGC	1 cut(s)	1000
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	2 cut(s)	269, 880
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	6 cut(s)	115, 126, 529, 690, 730, 747
DpnI	GATC	5 cut(s)	597, 615, 643, 656, 774
DpnII	GATC	5 cut(s)	595, 613, 641, 654, 772
Eco47III	AGCGCT	1 cut(s)	999
Eco57I	CTGAAG	3 cut(s)	22, 768, 1103
Eco81I	CCTNAGG	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	831
EcoRI	GAATTC	2 cut(s)	4, 884
EcoRII	CCWGG	2 cut(s)	708, 823
EcoT22I	ATGCAT	1 cut(s)	166
FaeI	CATG	2 cut(s)	272, 883
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	2 cut(s)	268, 879
FbaI	TGATCA	3 cut(s)	595, 654, 772
Fnu4HI	GCNGC	9 cut(s)	45, 174, 198, 359, 381, 477, 913, 1047, 1050
FokI	GGATG	8 cut(s)	151, 161, 205, 515, 566, 725, 956, 999
Fsp4HI	GCNGC	9 cut(s)	45, 174, 198, 359, 381, 477, 913, 1047, 1050
FspBI	CTAG	2 cut(s)	231, 1119
GlaI	GCGC	1 cut(s)	999
GluI	GCNGC	9 cut(s)	45, 174, 198, 359, 381, 477, 913, 1047, 1050
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	1001
HaeIII	GGCC	2 cut(s)	562, 823
HapII	CCGG	2 cut(s)	611, 1025
HhaI	GCGC	1 cut(s)	1000
Hin1II	CATG	2 cut(s)	272, 883
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HincII	GTYRAC	1 cut(s)	934
HindII	GTYRAC	1 cut(s)	934
HinfI	GANTC	5 cut(s)	179, 716, 755, 802, 1021
HpaII	CCGG	2 cut(s)	611, 1025
HphI	GGTGA	2 cut(s)	706, 943
Hpy166II	GTNNAC	4 cut(s)	537, 548, 934, 1108
Hpy188I	TCNGA	2 cut(s)	343, 1020
Hpy188III	TCNNGA	7 cut(s)	146, 222, 275, 749, 776, 869, 1057
Hpy8I	GTNNAC	4 cut(s)	537, 548, 934, 1108
Hpy99I	CGWCG	2 cut(s)	13, 27
HpyAV	CCTTC	7 cut(s)	164, 261, 300, 632, 678, 1027, 1063
HpyCH4III	ACNGT	5 cut(s)	142, 436, 541, 1094, 1112
HpyCH4IV	ACGT	1 cut(s)	703
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 170, 269, 554, 731, 918, 1043
HpyF3I	CTNAG	6 cut(s)	115, 126, 529, 690, 730, 747
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	2 cut(s)	272, 883
HspAI	GCGC	1 cut(s)	998
Ksp22I	TGATCA	3 cut(s)	595, 654, 772
Kzo9I	GATC	5 cut(s)	595, 613, 641, 654, 772
LmnI	GCTCC	2 cut(s)	473, 739
Lsp1109I	GCAGC	7 cut(s)	209, 367, 370, 463, 924, 1036, 1058
LweI	GCATC	5 cut(s)	139, 173, 237, 381, 544
MaeI	CTAG	2 cut(s)	231, 1119
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	5 cut(s)	597, 615, 643, 656, 774
MboI	GATC	5 cut(s)	595, 613, 641, 654, 772
MboII	GAAGA	8 cut(s)	48, 54, 57, 60, 63, 103, 764, 1096
MflI	RGATCY	2 cut(s)	613, 641
MhlI	GDGCHC	2 cut(s)	550, 995
MluCI	AATT	7 cut(s)	4, 588, 600, 846, 884, 891, 1114
MlyI	GAGTC	2 cut(s)	173, 710
MmeI	TCCRAC	2 cut(s)	117, 366
MnlI	CCTC	8 cut(s)	116, 135, 184, 275, 319, 772, 997, 1006
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	4 cut(s)	347, 510, 603, 633
MspA1I	CMGCKG	1 cut(s)	1049
MspCI	CTTAAG	1 cut(s)	346
MspI	CCGG	2 cut(s)	611, 1025
MspR9I	CCNGG	3 cut(s)	710, 825, 1026
MvaI	CCWGG	2 cut(s)	710, 825
MwoI	GCNNNNNNNGC	7 cut(s)	33, 170, 269, 554, 731, 918, 1043
NciI	CCSGG	1 cut(s)	1026
NdeII	GATC	5 cut(s)	595, 613, 641, 654, 772
NlaIII	CATG	2 cut(s)	272, 883
NlaIV	GGNNCC	1 cut(s)	609
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	755, 802, 1021
PkrI	GCNGC	9 cut(s)	46, 175, 199, 360, 382, 478, 914, 1048, 1051
PleI	GAGTC	2 cut(s)	173, 710
PpsI	GAGTC	2 cut(s)	173, 710
PsiI	TTATAA	1 cut(s)	959
Psp6I	CCWGG	2 cut(s)	708, 823
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	2 cut(s)	708, 823
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	560
PspXI	VCTCGAGB	1 cut(s)	831
PsrI	GAACNNNNNNTAC	2 cut(s)	999, 1031
PstI	CTGCAG	1 cut(s)	914
PsuI	RGATCY	2 cut(s)	613, 641
PvuII	CAGCTG	1 cut(s)	1049
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	347, 510, 603, 633
SatI	GCNGC	9 cut(s)	45, 174, 198, 359, 381, 477, 913, 1047, 1050
Sau3AI	GATC	5 cut(s)	595, 613, 641, 654, 772
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	2 cut(s)	173, 710
ScrFI	CCNGG	3 cut(s)	710, 825, 1026
SduI	GDGCHC	2 cut(s)	550, 995
SfaNI	GCATC	5 cut(s)	139, 173, 237, 381, 544
SfcI	CTRYAG	1 cut(s)	910
Sfr274I	CTCGAG	1 cut(s)	831
SlaI	CTCGAG	1 cut(s)	831
SmlI	CTYRAG	3 cut(s)	346, 831, 1001
SmoI	CTYRAG	3 cut(s)	346, 831, 1001
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	7 cut(s)	4, 588, 600, 846, 884, 891, 1114
SsiI	CCGC	3 cut(s)	45, 174, 941
SspMI	CTAG	2 cut(s)	231, 1119
StyD4I	CCNGG	3 cut(s)	708, 823, 1024
TaaI	ACNGT	5 cut(s)	142, 436, 541, 1094, 1112
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	832
TasI	AATT	7 cut(s)	4, 588, 600, 846, 884, 891, 1114
TauI	GCSGC	2 cut(s)	47, 176
TfiI	GAWTC	3 cut(s)	755, 802, 1021
Tru1I	TTAA	4 cut(s)	347, 510, 603, 633
Tru9I	TTAA	4 cut(s)	347, 510, 603, 633
TscAI	CASTG	5 cut(s)	46, 175, 382, 544, 555
TseI	GCWGC	7 cut(s)	197, 358, 380, 476, 912, 1046, 1049
TspDTI	ATGAA	6 cut(s)	17, 42, 48, 528, 651, 960
TspRI	CASTG	5 cut(s)	46, 175, 382, 544, 555
Vha464I	CTTAAG	1 cut(s)	346
VneI	GTGCAC	1 cut(s)	546
XapI	RAATTY	2 cut(s)	4, 884
XceI	RCATGY	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	831
XspI	CTAG	2 cut(s)	231, 1119
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.