RchiOBHm_Chr3g0491591

Methionyl-trna

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
38326488 .. 38333611
7124 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45456

Sequence Viewer

Length: 1110 bp
ATGAATTCCTCCTCACTGATGTTGCGTCGGTTCTTGTGCTTCAACGCCTCGCCTCCATCTTCTTCTTCTTCTTCTATTCTATGCTTCTCTTCCAGCAGGAATAGGAAGCCCCTAGTCTTCTTAGGCTCTCCTCAGGTCTCTGCAACTGTTCTTGACGCCTTGCTGAATGCATCCGGTGGCCCAGATTCTCTGTTTGAGGTTGCAGCAATTGTGACTCAACCACCTTCCATGAAGAATAGGGGGAAGAAGGTGCTGCCGTCTCCTTTAGCACAACATGCTCTTGACAGAGGCTTTCCTTCAGAGCTCATTTTCACACCTGCACGAGCTGGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGAAGCCAGAACTTTGTATCACTGCTGCATATGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCGTGCACTGGATGCTGGACCTGTGATAGCCAGTCAAGGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTGCTCTCCTATTTTCTGAAGGATCCAAACTATTGATTCACCAGCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCGCAGTCCCAGGATGACTCTAAAGCTACATTAGCTCCAAAGATTTCTCCTGAGGAGTCATGGCTATCATTTGATCAGGAAGCTGTAGTCCTACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACAACAAAAATGGTCACCGCAATATACTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCAAAGCAATATTCATGTCAACCAAGCGGATGACATCTCTTTTCGAAAGGGTGCATTAGTATTCCCCTGTGGTGGGTCCACATCACTTGAGGTGCTGGAGATTCAGCTTCCAGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

369

Amino Acids

39.69

Weight (kDa)

9.27

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 40 - 220 2e-31 Formyl transferase
Formyl_trans_C PF02911 249 - 358 4.3e-17 Formyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 613
AciI CCGC 2 cut(s) 877, 947
AclWI GGATC 2 cut(s) 642, 655
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 282, 663
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 5 cut(s) 433, 434, 556, 992, 993
AflII CTTAAG 1 cut(s) 352
AgsI TTSAA 3 cut(s) 43, 364, 494
AjnI CCWGG 3 cut(s) 714, 829, 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
Alw21I GWGCWC 2 cut(s) 306, 556
Alw26I GTCTC 2 cut(s) 142, 264
Alw44I GTGCAC 1 cut(s) 552
AlwI GGATC 2 cut(s) 642, 655
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 837
AoxI GGCC 2 cut(s) 178, 827
ApaLI GTGCAC 1 cut(s) 552
ApeKI GCWGC 8 cut(s) 203, 253, 386, 463, 482, 918, 1052, 1055
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 3 cut(s) 179, 566, 996
AsuHPI GGTGA 2 cut(s) 656, 866
AsuII TTCGAA 1 cut(s) 964
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 2 cut(s) 566, 996
AxyI CCTNAGG 2 cut(s) 132, 756
BaeGI GKGCMC 2 cut(s) 440, 556
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 306
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 2 cut(s) 306, 556
BbvI GCAGC 8 cut(s) 215, 240, 373, 450, 494, 930, 1042, 1064
BccI CCATC 4 cut(s) 64, 503, 680, 819
BceAI ACGGC 2 cut(s) 241, 451
BciT130I CCWGG 3 cut(s) 716, 831, 1032
BciVI GTATCC 1 cut(s) 541
BclI TGATCA 2 cut(s) 601, 778
BcoDI GTCTC 2 cut(s) 142, 264
BfaI CTAG 2 cut(s) 113, 408
BfmI CTRYAG 1 cut(s) 789
BfrI CTTAAG 1 cut(s) 352
BfuAI ACCTGC 1 cut(s) 325
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 8 cut(s) 204, 254, 387, 464, 483, 919, 1053, 1056
BlsI GCNGC 8 cut(s) 205, 255, 388, 465, 484, 920, 1054, 1057
Bme1390I CCNGG 3 cut(s) 716, 831, 1032
Bme18I GGWCC 2 cut(s) 566, 996
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 3 cut(s) 179, 566, 996
BmiI GGNNCC 3 cut(s) 615, 649, 997
BmrFI CCNGG 3 cut(s) 716, 831, 1032
BmsI GCATC 2 cut(s) 179, 550
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 3 cut(s) 348, 908, 1037
Bpu10I CCTNAGC 1 cut(s) 535
Bpu14I TTCGAA 1 cut(s) 964
BpuEI CTTGAG 1 cut(s) 1028
BsaAI YACGTR 1 cut(s) 1076
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 1 cut(s) 714
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 5 cut(s) 433, 434, 556, 992, 993
Bse1I ACTGG 4 cut(s) 561, 579, 594, 891
Bse21I CCTNAGG 2 cut(s) 132, 756
BseBI CCWGG 3 cut(s) 716, 831, 1032
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 6 cut(s) 170, 514, 565, 724, 830, 955
BseLI CCNNNNNNNGG 5 cut(s) 433, 434, 556, 992, 993
BseMII CTCAG 2 cut(s) 146, 747
BseNI ACTGG 4 cut(s) 561, 579, 594, 891
BseRI GAGGAG 2 cut(s) 120, 773
BseSI GKGCMC 2 cut(s) 440, 556
BseXI GCAGC 8 cut(s) 215, 240, 373, 450, 494, 930, 1042, 1064
BsgI GTGCAG 2 cut(s) 303, 501
BshFI GGCC 2 cut(s) 180, 829
BshNI GGYRCC 1 cut(s) 613
BsiHKAI GWGCWC 2 cut(s) 306, 556
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 697
BslI CCNNNNNNNGG 5 cut(s) 433, 434, 556, 992, 993
BsmAI GTCTC 2 cut(s) 142, 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 697
BsmI GAATGC 2 cut(s) 172, 1054
BsnI GGCC 2 cut(s) 180, 829
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 837
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 3 cut(s) 306, 440, 556
Bsp143I GATC 3 cut(s) 601, 647, 778
BspACI CCGC 2 cut(s) 877, 947
BspANI GGCC 2 cut(s) 180, 829
BspCNI CTCAG 2 cut(s) 145, 748
BspLI GGNNCC 3 cut(s) 615, 649, 997
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 2 cut(s) 642, 655
BspT104I TTCGAA 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 142
BsrI ACTGG 4 cut(s) 561, 579, 594, 891
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 3 cut(s) 601, 647, 778
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 3 cut(s) 716, 831, 1032
Bst4CI ACNGT 4 cut(s) 148, 442, 547, 1070
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 352
BstAPI GCANNNNNTGC 2 cut(s) 275, 560
BstBAI YACGTR 1 cut(s) 1076
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 4 cut(s) 121, 132, 535, 756
BstEII GGTNACC 1 cut(s) 872
BstF5I GGATG 6 cut(s) 170, 514, 565, 724, 830, 955
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 3 cut(s) 604, 650, 781
BstMAI GTCTC 2 cut(s) 142, 264
BstMBI GATC 3 cut(s) 601, 647, 778
BstMWI GCNNNNNNNGC 4 cut(s) 275, 560, 737, 924
BstNI CCWGG 3 cut(s) 716, 831, 1032
BstNSI RCATGY 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 872
BstSCI CCNGG 3 cut(s) 714, 829, 1030
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 2 cut(s) 440, 556
BstV1I GCAGC 8 cut(s) 215, 240, 373, 450, 494, 930, 1042, 1064
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 647
BstYI RGATCY 1 cut(s) 647
Bsu36I CCTNAGG 2 cut(s) 132, 756
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 2 cut(s) 180, 829
BtsCI GGATG 6 cut(s) 170, 514, 565, 724, 830, 955
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 3 cut(s) 14, 381, 554
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 627
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 3 cut(s) 179, 566, 996
CseI GACGC 2 cut(s) 14, 164
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CviAII CATG 4 cut(s) 229, 275, 765, 935
DdeI CTNAG 4 cut(s) 121, 132, 535, 756
DpnI GATC 3 cut(s) 603, 649, 780
DpnII GATC 3 cut(s) 601, 647, 778
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 566, 996
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 282, 663
Eco81I CCTNAGG 2 cut(s) 132, 756
Eco88I CYCGRG 1 cut(s) 837
Eco91I GGTNACC 1 cut(s) 872
EcoICRI GAGCTC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 872
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 714, 829, 1030
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 4 cut(s) 232, 278, 768, 938
FaqI GGGAC 1 cut(s) 697
FatI CATG 4 cut(s) 228, 274, 764, 934
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 2 cut(s) 601, 778
Fnu4HI GCNGC 8 cut(s) 204, 254, 387, 464, 483, 919, 1053, 1056
FokI GGATG 6 cut(s) 157, 521, 572, 731, 837, 962
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 8 cut(s) 204, 254, 387, 464, 483, 919, 1053, 1056
FspBI CTAG 2 cut(s) 113, 408
GlaI GCGC 1 cut(s) 708
GluI GCNGC 8 cut(s) 204, 254, 387, 464, 483, 919, 1053, 1056
GsuI CTGGAG 3 cut(s) 348, 908, 1037
HaeIII GGCC 2 cut(s) 180, 829
HapII CCGG 1 cut(s) 174
HgaI GACGC 2 cut(s) 14, 164
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 4 cut(s) 232, 278, 768, 938
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HincII GTYRAC 3 cut(s) 859, 940, 1082
HindII GTYRAC 3 cut(s) 859, 940, 1082
HinfI GANTC 6 cut(s) 185, 214, 661, 722, 761, 1021
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 656, 866
Hpy166II GTNNAC 6 cut(s) 554, 859, 940, 999, 1073, 1082
Hpy188I TCNGA 2 cut(s) 301, 643
Hpy188III TCNNGA 6 cut(s) 152, 281, 427, 755, 782, 1063
Hpy8I GTNNAC 6 cut(s) 554, 859, 940, 999, 1073, 1082
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 7 cut(s) 234, 241, 306, 638, 684, 1033, 1069
HpyCH4III ACNGT 4 cut(s) 148, 442, 547, 1070
HpyCH4IV ACGT 1 cut(s) 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 560, 737, 924
HpyF3I CTNAG 4 cut(s) 121, 132, 535, 756
HpySE526I ACGT 1 cut(s) 1075
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 4 cut(s) 232, 278, 768, 938
HspAI GCGC 1 cut(s) 707
Ksp22I TGATCA 2 cut(s) 601, 778
Kzo9I GATC 3 cut(s) 601, 647, 778
LmnI GCTCC 2 cut(s) 745, 889
Lsp1109I GCAGC 8 cut(s) 215, 240, 373, 450, 494, 930, 1042, 1064
LweI GCATC 2 cut(s) 179, 550
MaeI CTAG 2 cut(s) 113, 408
MaeII ACGT 1 cut(s) 1075
MaeIII GTNAC 2 cut(s) 211, 872
MalI GATC 3 cut(s) 603, 649, 780
MboI GATC 3 cut(s) 601, 647, 778
MboII GAAGA 9 cut(s) 51, 54, 57, 60, 63, 81, 109, 244, 256
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 3 cut(s) 306, 440, 556
MluCI AATT 6 cut(s) 4, 207, 594, 606, 698, 897
MlyI GAGTC 3 cut(s) 208, 716, 770
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 6 cut(s) 353, 420, 609, 701, 894, 1089
MspA1I CMGCKG 1 cut(s) 1055
MspCI CTTAAG 1 cut(s) 352
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 3 cut(s) 716, 831, 1032
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 172, 1054
MvaI CCWGG 3 cut(s) 716, 831, 1032
MwoI GCNNNNNNNGC 4 cut(s) 275, 560, 737, 924
NdeI CATATG 1 cut(s) 391
NdeII GATC 3 cut(s) 601, 647, 778
NlaIII CATG 4 cut(s) 232, 278, 768, 938
NlaIV GGNNCC 3 cut(s) 615, 649, 997
NmuCI GTSAC 2 cut(s) 211, 872
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 1 cut(s) 964
PaeR7I CTCGAG 1 cut(s) 837
PaqCI CACCTGC 1 cut(s) 325
PctI GAATGC 2 cut(s) 172, 1054
PfeI GAWTC 3 cut(s) 185, 661, 1021
PkrI GCNGC 8 cut(s) 205, 255, 388, 465, 484, 920, 1054, 1057
PleI GAGTC 3 cut(s) 208, 716, 769
PpsI GAGTC 3 cut(s) 208, 716, 769
Ppu21I YACGTR 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 714, 829, 1030
PspEI GGTNACC 1 cut(s) 872
PspGI CCWGG 3 cut(s) 714, 829, 1030
PspN4I GGNNCC 3 cut(s) 615, 649, 997
PspPI GGNCC 3 cut(s) 179, 566, 996
PspXI VCTCGAGB 1 cut(s) 837
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 647
PvuII CAGCTG 1 cut(s) 1055
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 6 cut(s) 353, 420, 609, 701, 894, 1089
SatI GCNGC 8 cut(s) 204, 254, 387, 464, 483, 919, 1053, 1056
Sau3AI GATC 3 cut(s) 601, 647, 778
Sau96I GGNCC 3 cut(s) 179, 566, 996
SchI GAGTC 3 cut(s) 208, 716, 770
ScrFI CCNGG 3 cut(s) 716, 831, 1032
SduI GDGCHC 3 cut(s) 306, 440, 556
SfaNI GCATC 2 cut(s) 179, 550
SfcI CTRYAG 1 cut(s) 789
Sfr274I CTCGAG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 2 cut(s) 566, 996
SlaI CTCGAG 1 cut(s) 837
SmlI CTYRAG 3 cut(s) 352, 837, 1007
SmoI CTYRAG 3 cut(s) 352, 837, 1007
Sse9I AATT 6 cut(s) 4, 207, 594, 606, 698, 897
SsiI CCGC 2 cut(s) 877, 947
SspI AATATT 1 cut(s) 931
SspMI CTAG 2 cut(s) 113, 408
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 714, 829, 1030
TaaI ACNGT 4 cut(s) 148, 442, 547, 1070
TaiI ACGT 1 cut(s) 1078
TaqI TCGA 2 cut(s) 838, 964
TasI AATT 6 cut(s) 4, 207, 594, 606, 698, 897
TfiI GAWTC 3 cut(s) 185, 661, 1021
Tru1I TTAA 6 cut(s) 353, 420, 609, 701, 894, 1089
Tru9I TTAA 6 cut(s) 353, 420, 609, 701, 894, 1089
TscAI CASTG 3 cut(s) 21, 388, 561
TseFI GTSAC 2 cut(s) 211, 872
TseI GCWGC 8 cut(s) 203, 253, 386, 463, 482, 918, 1052, 1055
Tsp45I GTSAC 2 cut(s) 211, 872
TspDTI ATGAA 4 cut(s) 17, 245, 923, 1061
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 3 cut(s) 21, 388, 561
Vha464I CTTAAG 1 cut(s) 352
VneI GTGCAC 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 566, 996
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 837
XspI CTAG 2 cut(s) 113, 408
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.