Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000927.1

Orthogroup ID

OG0009304

Physical Location & Seq

Genomic Coordinates Reverse (-)

64400 .. 70929

Gene Structure 6530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000927.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgttgcgtcggttcttgtgcttcaatgcctcgactgcatcttcttcttcttcttctattctatgcttctcctccaacaggaataggaagcccctcgtcttcttaggctctcctcaggtctctacaactgttcttgacgccctgctgaatgcatccggtgccccagattctgtgtttgaggttgcagcaattgtgactcaaccaccttccaggaagaatagggggaagaaggtgctgccgtctcctttagcacaatatgctcttgacagaggctttccttcagacctcattttcacacctgcacgagctggagaggatatgttcctgtccagcttaagagctttgcagccagaactttgcatcactgccgcatatgggaacattttacctagcaagtttcttaatatcccgactttgggcacagtaaatatacacccaagtttgctgccgttgtatcgtggtgcagcacctgttcaaagagctttgcaggatggtgtcaaagaaacaggagtatccttagcatttactgtccgtgcgctggatgctggacctgtgatagccagtcaaagactggaaattgatgatcaaattaaggcaccagatttgcttactctcctattttctgaaggatccaaactattgattcaccagcttccttccatatttgatggttcagctaaattaaaagcgcagtcccaggatgactctaaagctacattagctccaaagatttctcctgaggagtcatggctatcatttgatcaggaagctgtagtccaacataacaaggttcgtgcatttgcaggatggcctggaactcgagctaaagttgtagttgttgacaacaaaaacggtcaccgcaatatgctggagcttaaaattatcacaaccaaagtttgcagccaaagcaatattcaggtcaaccaagcagatgacatctcttttcgaaagggtgcattagtattcccctgtggcgggtccacatcacttgaggtgctggagattcagcttcctggtaagaaggttatgaatgcagctgccttctggaacggtttacgtggtcaacaacttaaaagatttgttgatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko00970 map00670 map00970

Pfam Domains

Protein Families

Formyl_trans_C Formyl_trans_N

Protein Analysis

363

Amino Acids

39.3

Weight (kDa)

9.36

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66520 AT1G66520
fragaria_vesca	FvH4_2g04020
malus_domestica	MD09G1260600.v1.1
prunus_persica	Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1 Prupe.3G152400_v2.0.a1
pyrus_communis	pycom09g17510
rosa_chinensis	RchiOBHm_Chr3g0491591 RchiOBHm_Chr3g0493551
rosa_laevigata	RLG00000022705 RLG00000022838
rosa_multiflora	Rmu_sc0000927.1_g000008
rosa_roxburghii	Rroxscaffold_6G00392850
rosa_rugosa	Rorug03G0250000
rosa_samantha	Rh3AG299300 Rh3AG311200 Rh3BG335300 Rh3BG347100 Rh3CG345200 Rh3DG347400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	158, 595
AciI	CCGC	3 cut(s)	369, 859, 975
AclWI	GGATC	2 cut(s)	624, 637
AcuI	CTGAAG	2 cut(s)	264, 645
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	7 cut(s)	78, 375, 415, 416, 538, 974, 975
AflII	CTTAAG	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	25, 476
AjnI	CCWGG	4 cut(s)	209, 696, 811, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	897, 929
Alw26I	GTCTC	2 cut(s)	124, 246
AlwI	GGATC	2 cut(s)	624, 637
AlwNI	CAGNNNCTG	2 cut(s)	170, 470
Ama87I	CYCGRG	1 cut(s)	819
AoxI	GGCC	1 cut(s)	809
ApeKI	GCWGC	8 cut(s)	185, 235, 346, 445, 464, 900, 1034, 1037
AspLEI	GCGC	2 cut(s)	538, 691
AspS9I	GGNCC	2 cut(s)	548, 978
AsuHPI	GGTGA	2 cut(s)	638, 848
AsuII	TTCGAA	1 cut(s)	946
AvaI	CYCGRG	1 cut(s)	819
AvaII	GGWCC	2 cut(s)	548, 978
AxyI	CCTNAGG	2 cut(s)	114, 738
BaeGI	GKGCMC	2 cut(s)	163, 422
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BamHI	GGATCC	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	158, 595
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	8 cut(s)	197, 222, 358, 432, 476, 912, 1024, 1046
BccI	CCATC	3 cut(s)	485, 662, 801
BceAI	ACGGC	2 cut(s)	223, 433
BciT130I	CCWGG	4 cut(s)	211, 698, 813, 1014
BciVI	GTATCC	1 cut(s)	523
BclI	TGATCA	2 cut(s)	583, 760
BcoDI	GTCTC	2 cut(s)	124, 246
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	771
BfrI	CTTAAG	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	523
BisI	GCNGC	9 cut(s)	186, 236, 347, 369, 446, 465, 901, 1035, 1038
BlsI	GCNGC	9 cut(s)	187, 237, 348, 370, 447, 466, 902, 1036, 1039
Bme1390I	CCNGG	4 cut(s)	211, 698, 813, 1014
Bme18I	GGWCC	2 cut(s)	548, 978
BmeT110I	CYCGRG	1 cut(s)	819
BmgT120I	GGNCC	2 cut(s)	548, 978
BmiI	GGNNCC	4 cut(s)	160, 597, 631, 979
BmrFI	CCNGG	4 cut(s)	211, 698, 813, 1014
BmsI	GCATC	4 cut(s)	47, 161, 369, 532
BpiI	GAAGAC	1 cut(s)	91
BpmI	CTGGAG	3 cut(s)	330, 890, 1019
Bpu10I	CCTNAGC	1 cut(s)	517
Bpu14I	TTCGAA	1 cut(s)	946
BpuEI	CTTGAG	1 cut(s)	1010
BsaAI	YACGTR	1 cut(s)	1058
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	7 cut(s)	78, 375, 415, 416, 538, 974, 975
Bse1I	ACTGG	2 cut(s)	561, 576
Bse21I	CCTNAGG	2 cut(s)	114, 738
BseBI	CCWGG	4 cut(s)	211, 698, 813, 1014
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	5 cut(s)	152, 496, 547, 706, 812
BseLI	CCNNNNNNNGG	7 cut(s)	78, 375, 415, 416, 538, 974, 975
BseMII	CTCAG	2 cut(s)	128, 729
BseNI	ACTGG	2 cut(s)	561, 576
BseRI	GAGGAG	3 cut(s)	61, 102, 755
BseSI	GKGCMC	2 cut(s)	163, 422
BseXI	GCAGC	8 cut(s)	197, 222, 358, 432, 476, 912, 1024, 1046
BsgI	GTGCAG	2 cut(s)	285, 483
BshFI	GGCC	1 cut(s)	811
BshNI	GGYRCC	2 cut(s)	158, 595
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	7 cut(s)	78, 375, 415, 416, 538, 974, 975
BsmAI	GTCTC	2 cut(s)	124, 246
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	2 cut(s)	154, 1036
BsnI	GGCC	1 cut(s)	811
Bso31I	GGTCTC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	819
Bsp119I	TTCGAA	1 cut(s)	946
Bsp1286I	GDGCHC	2 cut(s)	163, 422
Bsp143I	GATC	3 cut(s)	583, 629, 760
BspACI	CCGC	3 cut(s)	369, 859, 975
BspANI	GGCC	1 cut(s)	811
BspCNI	CTCAG	2 cut(s)	127, 730
BspLI	GGNNCC	4 cut(s)	160, 597, 631, 979
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	2 cut(s)	624, 637
BspT104I	TTCGAA	1 cut(s)	946
BspT107I	GGYRCC	2 cut(s)	158, 595
BspTI	CTTAAG	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	561, 576
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	3 cut(s)	583, 629, 760
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	4 cut(s)	211, 698, 813, 1014
Bst4CI	ACNGT	5 cut(s)	130, 424, 529, 854, 1052
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	334
BstAPI	GCANNNNNTGC	2 cut(s)	158, 257
BstBAI	YACGTR	1 cut(s)	1058
BstBI	TTCGAA	1 cut(s)	946
BstDEI	CTNAG	4 cut(s)	103, 114, 517, 738
BstEII	GGTNACC	1 cut(s)	854
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	5 cut(s)	152, 496, 547, 706, 812
BstHHI	GCGC	2 cut(s)	538, 691
BstKTI	GATC	3 cut(s)	586, 632, 763
BstMAI	GTCTC	2 cut(s)	124, 246
BstMBI	GATC	3 cut(s)	583, 629, 760
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 158, 257, 542, 719, 906
BstNI	CCWGG	4 cut(s)	211, 698, 813, 1014
BstPI	GGTNACC	1 cut(s)	854
BstSCI	CCNGG	4 cut(s)	209, 696, 811, 1012
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	2 cut(s)	163, 422
BstV1I	GCAGC	8 cut(s)	197, 222, 358, 432, 476, 912, 1024, 1046
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	629
Bsu36I	CCTNAGG	2 cut(s)	114, 738
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	811
BtsCI	GGATG	5 cut(s)	152, 496, 547, 706, 812
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
BveI	ACCTGC	1 cut(s)	307
CaiI	CAGNNNCTG	2 cut(s)	170, 470
CfoI	GCGC	2 cut(s)	538, 691
Cfr13I	GGNCC	2 cut(s)	548, 978
CseI	GACGC	1 cut(s)	146
CspCI	CAANNNNNGTGG	2 cut(s)	970, 1005
CviAII	CATG	1 cut(s)	747
DdeI	CTNAG	4 cut(s)	103, 114, 517, 738
DpnI	GATC	3 cut(s)	585, 631, 762
DpnII	GATC	3 cut(s)	583, 629, 760
Eco31I	GGTCTC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	548, 978
Eco57I	CTGAAG	2 cut(s)	264, 645
Eco81I	CCTNAGG	2 cut(s)	114, 738
Eco88I	CYCGRG	1 cut(s)	819
Eco91I	GGTNACC	1 cut(s)	854
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	854
EcoRII	CCWGG	4 cut(s)	209, 696, 811, 1012
EcoT22I	ATGCAT	1 cut(s)	154
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	750
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	1 cut(s)	746
FauI	CCCGC	1 cut(s)	968
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	2 cut(s)	583, 760
Fnu4HI	GCNGC	9 cut(s)	186, 236, 347, 369, 446, 465, 901, 1035, 1038
FokI	GGATG	5 cut(s)	139, 503, 554, 713, 819
Fsp4HI	GCNGC	9 cut(s)	186, 236, 347, 369, 446, 465, 901, 1035, 1038
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	2 cut(s)	537, 690
GluI	GCNGC	9 cut(s)	186, 236, 347, 369, 446, 465, 901, 1035, 1038
GsuI	CTGGAG	3 cut(s)	330, 890, 1019
HaeIII	GGCC	1 cut(s)	811
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	2 cut(s)	538, 691
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	750
Hin6I	GCGC	2 cut(s)	536, 689
HinP1I	GCGC	2 cut(s)	536, 689
HincII	GTYRAC	3 cut(s)	841, 922, 1064
HindII	GTYRAC	3 cut(s)	841, 922, 1064
HinfI	GANTC	6 cut(s)	167, 196, 643, 704, 743, 1003
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	638, 848
Hpy166II	GTNNAC	5 cut(s)	841, 922, 981, 1055, 1064
Hpy188I	TCNGA	2 cut(s)	283, 625
Hpy188III	TCNNGA	6 cut(s)	134, 263, 409, 737, 764, 1045
Hpy8I	GTNNAC	5 cut(s)	841, 922, 981, 1055, 1064
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	7 cut(s)	216, 223, 288, 620, 666, 1015, 1051
HpyCH4III	ACNGT	5 cut(s)	130, 424, 529, 854, 1052
HpyCH4IV	ACGT	1 cut(s)	1057
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 158, 257, 542, 719, 906
HpyF3I	CTNAG	4 cut(s)	103, 114, 517, 738
HpySE526I	ACGT	1 cut(s)	1057
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	750
HspAI	GCGC	2 cut(s)	536, 689
Ksp22I	TGATCA	2 cut(s)	583, 760
Kzo9I	GATC	3 cut(s)	583, 629, 760
LmnI	GCTCC	2 cut(s)	727, 871
Lsp1109I	GCAGC	8 cut(s)	197, 222, 358, 432, 476, 912, 1024, 1046
LweI	GCATC	4 cut(s)	47, 161, 369, 532
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	1057
MaeIII	GTNAC	2 cut(s)	193, 854
MalI	GATC	3 cut(s)	585, 631, 762
MboI	GATC	3 cut(s)	583, 629, 760
MboII	GAAGA	8 cut(s)	33, 36, 39, 42, 45, 91, 226, 238
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	629
MhlI	GDGCHC	2 cut(s)	163, 422
MluCI	AATT	5 cut(s)	189, 576, 588, 680, 879
MlyI	GAGTC	3 cut(s)	190, 698, 752
MmeI	TCCRAC	2 cut(s)	99, 802
Mph1103I	ATGCAT	1 cut(s)	154
MseI	TTAA	6 cut(s)	335, 402, 591, 683, 876, 1071
MspA1I	CMGCKG	1 cut(s)	1037
MspCI	CTTAAG	1 cut(s)	334
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	4 cut(s)	211, 698, 813, 1014
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	2 cut(s)	154, 1036
MvaI	CCWGG	4 cut(s)	211, 698, 813, 1014
MwoI	GCNNNNNNNGC	6 cut(s)	35, 158, 257, 542, 719, 906
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	3 cut(s)	583, 629, 760
NlaIII	CATG	1 cut(s)	750
NlaIV	GGNNCC	4 cut(s)	160, 597, 631, 979
NmuCI	GTSAC	2 cut(s)	193, 854
NsiI	ATGCAT	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	946
PaeR7I	CTCGAG	1 cut(s)	819
PaqCI	CACCTGC	1 cut(s)	307
PctI	GAATGC	2 cut(s)	154, 1036
PfeI	GAWTC	3 cut(s)	167, 643, 1003
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	9 cut(s)	187, 237, 348, 370, 447, 466, 902, 1036, 1039
PleI	GAGTC	3 cut(s)	190, 698, 751
PpsI	GAGTC	3 cut(s)	190, 698, 751
Ppu21I	YACGTR	1 cut(s)	1058
Psp6I	CCWGG	4 cut(s)	209, 696, 811, 1012
PspEI	GGTNACC	1 cut(s)	854
PspGI	CCWGG	4 cut(s)	209, 696, 811, 1012
PspN4I	GGNNCC	4 cut(s)	160, 597, 631, 979
PspPI	GGNCC	2 cut(s)	548, 978
PspXI	VCTCGAGB	1 cut(s)	819
PstNI	CAGNNNCTG	2 cut(s)	170, 470
PsuI	RGATCY	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	1037
SaqAI	TTAA	6 cut(s)	335, 402, 591, 683, 876, 1071
SatI	GCNGC	9 cut(s)	186, 236, 347, 369, 446, 465, 901, 1035, 1038
Sau3AI	GATC	3 cut(s)	583, 629, 760
Sau96I	GGNCC	2 cut(s)	548, 978
SchI	GAGTC	3 cut(s)	190, 698, 752
ScrFI	CCNGG	4 cut(s)	211, 698, 813, 1014
SduI	GDGCHC	2 cut(s)	163, 422
SfaNI	GCATC	4 cut(s)	47, 161, 369, 532
SfcI	CTRYAG	1 cut(s)	771
Sfr274I	CTCGAG	1 cut(s)	819
SfuI	TTCGAA	1 cut(s)	946
SinI	GGWCC	2 cut(s)	548, 978
SlaI	CTCGAG	1 cut(s)	819
SmlI	CTYRAG	3 cut(s)	334, 819, 989
SmoI	CTYRAG	3 cut(s)	334, 819, 989
Sse9I	AATT	5 cut(s)	189, 576, 588, 680, 879
SsiI	CCGC	3 cut(s)	369, 859, 975
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	209, 696, 811, 1012
TaaI	ACNGT	5 cut(s)	130, 424, 529, 854, 1052
TaiI	ACGT	1 cut(s)	1060
TaqI	TCGA	3 cut(s)	32, 820, 946
TasI	AATT	5 cut(s)	189, 576, 588, 680, 879
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	3 cut(s)	167, 643, 1003
Tru1I	TTAA	6 cut(s)	335, 402, 591, 683, 876, 1071
Tru9I	TTAA	6 cut(s)	335, 402, 591, 683, 876, 1071
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	193, 854
TseI	GCWGC	8 cut(s)	185, 235, 346, 445, 464, 900, 1034, 1037
Tsp45I	GTSAC	2 cut(s)	193, 854
TspDTI	ATGAA	1 cut(s)	1043
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	548, 978
XagI	CCTNNNNNAGG	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XhoI	CTCGAG	1 cut(s)	819
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.