Rroxscaffold_6G00392850

Methionyl-trna

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
12611586 .. 12618712
7127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392850.1

Sequence Viewer

Length: 1119 bp
ATGAATTCCTCCTCACTGATGTTGCGTCGGTTCTTGTGCTTCAACGCCTCGCCTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTATTCTATGCTTCTCTTCCAGCAGGAATAGGAAGCCCCTAATCTTCTTAGGCTCTCCTCAGGTCTCTGCAACTGTTCTTGACGCCTTGCTGAATGCATCCGGTGGCCCAGATTCTCTGTTTGAGGTTGCAGCAATTGTGACTCAACCACCTTCCAGGAAGAATAGGGGGAAGAAGGTGCTGCCGTCTCCTTTAGCACAACATGCTCTTGACAGAGGCTTTCCTTCAGAGCTCATTTTCACACCTGCACGAGCTGGAGAGGATATGTTCCTGTCCAGCTTAAGAGCTTTGAAGCCAGAACTTTGTATCACTGCCGCATATGGGAACATTTTACCTAGCAAGTTTCTTAATATCCCGACTTTGGGCACAGTAAATATACACCCAAGTTTGCTGCCGTTGTATCGTGGTGCAGCACCTGTTCAAAGAGCTTTGCAGGATGGTGTCAAAGAAACAGGAGTATCCTTAGCATTTACTGTCCGTGCACTGGATGCTGGACCTGTGATAGCCAGTCAAGGACTGGAAATTGATGATCAAATTAAGGCACCAGATTTGCTTGCTCTCCTATTTTCTGAAGGATCCAAACTATTGATTCACCAGCTTCCTTCCATATTTGATGGTTCAGCTAAATTAAAAGCGCAGTCCCAGGATGACTCTAAAGCTACATTAGCTCCAAAGATTTCTCCTGAGGAGTCATGGCTATCATTTGATCAGGAAGCTGTAGTCCTACATAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACTCGAGCTAAAGTTGTAGTTGTTGACAACAAAAATGGTCACCGCAATATACTGGAGCTTAAAATTATCACAACCAAAGTTTGCAGCCAAAGCAATATTCATGTCAACCAAGCGGATGACATCTCTTTTCGAAAGGGTGCATTAGTATTCCCCTGTGGTGGGTCCACATCACTTGAGGTGCTGGAGATTCAGCTTCCAGGTAAGAAGGTTATGAATGCAGCTGCCTTCTGGAACGGTTTACGTGGTCAACAACTTAAAAGATTTGTTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

372

Amino Acids

39.99

Weight (kDa)

9.36

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 44 - 223 6.1e-31 Formyl transferase
Formyl_trans_C PF02911 252 - 361 4.3e-17 Formyl transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 334
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 622
AciI CCGC 3 cut(s) 396, 886, 956
AclWI GGATC 2 cut(s) 651, 664
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 291, 672
AcyI GRCGYC 1 cut(s) 165
AfiI CCNNNNNNNGG 6 cut(s) 402, 442, 443, 565, 1001, 1002
AflII CTTAAG 1 cut(s) 361
AgsI TTSAA 3 cut(s) 43, 373, 503
AjnI CCWGG 4 cut(s) 236, 723, 838, 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
Alw21I GWGCWC 2 cut(s) 315, 565
Alw26I GTCTC 2 cut(s) 151, 273
Alw44I GTGCAC 1 cut(s) 561
AlwI GGATC 2 cut(s) 651, 664
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 2 cut(s) 187, 836
ApaLI GTGCAC 1 cut(s) 561
ApeKI GCWGC 7 cut(s) 212, 262, 472, 491, 927, 1061, 1064
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 3 cut(s) 188, 575, 1005
AsuHPI GGTGA 2 cut(s) 665, 875
AsuII TTCGAA 1 cut(s) 973
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 2 cut(s) 575, 1005
AxyI CCTNAGG 2 cut(s) 141, 765
BaeGI GKGCMC 2 cut(s) 449, 565
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BamHI GGATCC 1 cut(s) 656
BanI GGYRCC 1 cut(s) 622
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 315, 565
BbvI GCAGC 7 cut(s) 224, 249, 459, 503, 939, 1051, 1073
BccI CCATC 4 cut(s) 64, 512, 689, 828
BceAI ACGGC 2 cut(s) 250, 460
BciT130I CCWGG 4 cut(s) 238, 725, 840, 1041
BciVI GTATCC 1 cut(s) 550
BclI TGATCA 2 cut(s) 610, 787
BcoDI GTCTC 2 cut(s) 151, 273
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 798
BfrI CTTAAG 1 cut(s) 361
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 8 cut(s) 213, 263, 396, 473, 492, 928, 1062, 1065
BlsI GCNGC 8 cut(s) 214, 264, 397, 474, 493, 929, 1063, 1066
Bme1390I CCNGG 4 cut(s) 238, 725, 840, 1041
Bme18I GGWCC 2 cut(s) 575, 1005
BmeT110I CYCGRG 1 cut(s) 846
BmgT120I GGNCC 3 cut(s) 188, 575, 1005
BmiI GGNNCC 3 cut(s) 624, 658, 1006
BmrFI CCNGG 4 cut(s) 238, 725, 840, 1041
BmsI GCATC 2 cut(s) 188, 559
BpmI CTGGAG 3 cut(s) 357, 917, 1046
Bpu10I CCTNAGC 1 cut(s) 544
Bpu14I TTCGAA 1 cut(s) 973
BpuEI CTTGAG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 1085
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 6 cut(s) 402, 442, 443, 565, 1001, 1002
Bse1I ACTGG 4 cut(s) 570, 588, 603, 900
Bse21I CCTNAGG 2 cut(s) 141, 765
BseBI CCWGG 4 cut(s) 238, 725, 840, 1041
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 6 cut(s) 179, 523, 574, 733, 839, 964
BseLI CCNNNNNNNGG 6 cut(s) 402, 442, 443, 565, 1001, 1002
BseMII CTCAG 2 cut(s) 155, 756
BseNI ACTGG 4 cut(s) 570, 588, 603, 900
BseRI GAGGAG 2 cut(s) 129, 782
BseSI GKGCMC 2 cut(s) 449, 565
BseXI GCAGC 7 cut(s) 224, 249, 459, 503, 939, 1051, 1073
BsgI GTGCAG 2 cut(s) 312, 510
BshFI GGCC 2 cut(s) 189, 838
BshNI GGYRCC 1 cut(s) 622
BsiHKAI GWGCWC 2 cut(s) 315, 565
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 6 cut(s) 402, 442, 443, 565, 1001, 1002
BsmAI GTCTC 2 cut(s) 151, 273
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 706
BsmI GAATGC 2 cut(s) 181, 1063
BsnI GGCC 2 cut(s) 189, 838
Bso31I GGTCTC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 846
Bsp119I TTCGAA 1 cut(s) 973
Bsp1286I GDGCHC 3 cut(s) 315, 449, 565
Bsp143I GATC 3 cut(s) 610, 656, 787
BspACI CCGC 3 cut(s) 396, 886, 956
BspANI GGCC 2 cut(s) 189, 838
BspCNI CTCAG 2 cut(s) 154, 757
BspLI GGNNCC 3 cut(s) 624, 658, 1006
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 2 cut(s) 651, 664
BspT104I TTCGAA 1 cut(s) 973
BspT107I GGYRCC 1 cut(s) 622
BspTI CTTAAG 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 151
BsrI ACTGG 4 cut(s) 570, 588, 603, 900
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 3 cut(s) 610, 656, 787
BssNI GRCGYC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 4 cut(s) 238, 725, 840, 1041
Bst4CI ACNGT 4 cut(s) 157, 451, 556, 1079
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 361
BstAPI GCANNNNNTGC 2 cut(s) 284, 569
BstBAI YACGTR 1 cut(s) 1085
BstBI TTCGAA 1 cut(s) 973
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 4 cut(s) 130, 141, 544, 765
BstEII GGTNACC 1 cut(s) 881
BstF5I GGATG 6 cut(s) 179, 523, 574, 733, 839, 964
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 3 cut(s) 613, 659, 790
BstMAI GTCTC 2 cut(s) 151, 273
BstMBI GATC 3 cut(s) 610, 656, 787
BstMWI GCNNNNNNNGC 4 cut(s) 284, 569, 746, 933
BstNI CCWGG 4 cut(s) 238, 725, 840, 1041
BstNSI RCATGY 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 881
BstSCI CCNGG 4 cut(s) 236, 723, 838, 1039
BstSFI CTRYAG 1 cut(s) 798
BstSLI GKGCMC 2 cut(s) 449, 565
BstV1I GCAGC 7 cut(s) 224, 249, 459, 503, 939, 1051, 1073
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
Bsu36I CCTNAGG 2 cut(s) 141, 765
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 189, 838
BtsCI GGATG 6 cut(s) 179, 523, 574, 733, 839, 964
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 14, 390, 563
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 636
CaiI CAGNNNCTG 1 cut(s) 497
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 188, 575, 1005
CseI GACGC 2 cut(s) 14, 173
CspCI CAANNNNNGTGG 2 cut(s) 997, 1032
CviAII CATG 3 cut(s) 284, 774, 944
DdeI CTNAG 4 cut(s) 130, 141, 544, 765
DpnI GATC 3 cut(s) 612, 658, 789
DpnII GATC 3 cut(s) 610, 656, 787
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 575, 1005
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 291, 672
Eco81I CCTNAGG 2 cut(s) 141, 765
Eco88I CYCGRG 1 cut(s) 846
Eco91I GGTNACC 1 cut(s) 881
EcoICRI GAGCTC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 4 cut(s) 236, 723, 838, 1039
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 3 cut(s) 287, 777, 947
FaqI GGGAC 1 cut(s) 706
FatI CATG 3 cut(s) 283, 773, 943
FauNDI CATATG 1 cut(s) 400
FbaI TGATCA 2 cut(s) 610, 787
Fnu4HI GCNGC 8 cut(s) 213, 263, 396, 473, 492, 928, 1062, 1065
FokI GGATG 6 cut(s) 166, 530, 581, 740, 846, 971
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 8 cut(s) 213, 263, 396, 473, 492, 928, 1062, 1065
FspBI CTAG 1 cut(s) 417
GlaI GCGC 1 cut(s) 717
GluI GCNGC 8 cut(s) 213, 263, 396, 473, 492, 928, 1062, 1065
GsuI CTGGAG 3 cut(s) 357, 917, 1046
HaeIII GGCC 2 cut(s) 189, 838
HapII CCGG 1 cut(s) 183
HgaI GACGC 2 cut(s) 14, 173
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 3 cut(s) 287, 777, 947
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 3 cut(s) 868, 949, 1091
HindII GTYRAC 3 cut(s) 868, 949, 1091
HinfI GANTC 6 cut(s) 194, 223, 670, 731, 770, 1030
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 665, 875
Hpy166II GTNNAC 6 cut(s) 563, 868, 949, 1008, 1082, 1091
Hpy188I TCNGA 2 cut(s) 310, 652
Hpy188III TCNNGA 6 cut(s) 161, 290, 436, 764, 791, 1072
Hpy8I GTNNAC 6 cut(s) 563, 868, 949, 1008, 1082, 1091
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 7 cut(s) 243, 250, 315, 647, 693, 1042, 1078
HpyCH4III ACNGT 4 cut(s) 157, 451, 556, 1079
HpyCH4IV ACGT 1 cut(s) 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 569, 746, 933
HpyF3I CTNAG 4 cut(s) 130, 141, 544, 765
HpySE526I ACGT 1 cut(s) 1084
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 3 cut(s) 287, 777, 947
HspAI GCGC 1 cut(s) 716
Ksp22I TGATCA 2 cut(s) 610, 787
Kzo9I GATC 3 cut(s) 610, 656, 787
LmnI GCTCC 2 cut(s) 754, 898
Lsp1109I GCAGC 7 cut(s) 224, 249, 459, 503, 939, 1051, 1073
LweI GCATC 2 cut(s) 188, 559
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 1084
MaeIII GTNAC 2 cut(s) 220, 881
MalI GATC 3 cut(s) 612, 658, 789
MboI GATC 3 cut(s) 610, 656, 787
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 3 cut(s) 315, 449, 565
MluCI AATT 6 cut(s) 4, 216, 603, 615, 707, 906
MlyI GAGTC 3 cut(s) 217, 725, 779
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 6 cut(s) 362, 429, 618, 710, 903, 1098
MspA1I CMGCKG 1 cut(s) 1064
MspCI CTTAAG 1 cut(s) 361
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 4 cut(s) 238, 725, 840, 1041
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 2 cut(s) 181, 1063
MvaI CCWGG 4 cut(s) 238, 725, 840, 1041
MwoI GCNNNNNNNGC 4 cut(s) 284, 569, 746, 933
NdeI CATATG 1 cut(s) 400
NdeII GATC 3 cut(s) 610, 656, 787
NlaIII CATG 3 cut(s) 287, 777, 947
NlaIV GGNNCC 3 cut(s) 624, 658, 1006
NmuCI GTSAC 2 cut(s) 220, 881
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 287
NspV TTCGAA 1 cut(s) 973
PaeR7I CTCGAG 1 cut(s) 846
PaqCI CACCTGC 1 cut(s) 334
PctI GAATGC 2 cut(s) 181, 1063
PfeI GAWTC 3 cut(s) 194, 670, 1030
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 8 cut(s) 214, 264, 397, 474, 493, 929, 1063, 1066
PleI GAGTC 3 cut(s) 217, 725, 778
PpsI GAGTC 3 cut(s) 217, 725, 778
Ppu21I YACGTR 1 cut(s) 1085
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 4 cut(s) 236, 723, 838, 1039
PspEI GGTNACC 1 cut(s) 881
PspGI CCWGG 4 cut(s) 236, 723, 838, 1039
PspN4I GGNNCC 3 cut(s) 624, 658, 1006
PspPI GGNCC 3 cut(s) 188, 575, 1005
PspXI VCTCGAGB 1 cut(s) 846
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 1064
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 6 cut(s) 362, 429, 618, 710, 903, 1098
SatI GCNGC 8 cut(s) 213, 263, 396, 473, 492, 928, 1062, 1065
Sau3AI GATC 3 cut(s) 610, 656, 787
Sau96I GGNCC 3 cut(s) 188, 575, 1005
SchI GAGTC 3 cut(s) 217, 725, 779
ScrFI CCNGG 4 cut(s) 238, 725, 840, 1041
SduI GDGCHC 3 cut(s) 315, 449, 565
SfaNI GCATC 2 cut(s) 188, 559
SfcI CTRYAG 1 cut(s) 798
Sfr274I CTCGAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 973
SinI GGWCC 2 cut(s) 575, 1005
SlaI CTCGAG 1 cut(s) 846
SmlI CTYRAG 3 cut(s) 361, 846, 1016
SmoI CTYRAG 3 cut(s) 361, 846, 1016
Sse9I AATT 6 cut(s) 4, 216, 603, 615, 707, 906
SsiI CCGC 3 cut(s) 396, 886, 956
SspI AATATT 1 cut(s) 940
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 4 cut(s) 236, 723, 838, 1039
TaaI ACNGT 4 cut(s) 157, 451, 556, 1079
TaiI ACGT 1 cut(s) 1087
TaqI TCGA 2 cut(s) 847, 973
TasI AATT 6 cut(s) 4, 216, 603, 615, 707, 906
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 3 cut(s) 194, 670, 1030
Tru1I TTAA 6 cut(s) 362, 429, 618, 710, 903, 1098
Tru9I TTAA 6 cut(s) 362, 429, 618, 710, 903, 1098
TscAI CASTG 3 cut(s) 21, 397, 570
TseFI GTSAC 2 cut(s) 220, 881
TseI GCWGC 7 cut(s) 212, 262, 472, 491, 927, 1061, 1064
Tsp45I GTSAC 2 cut(s) 220, 881
TspDTI ATGAA 3 cut(s) 17, 932, 1070
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 3 cut(s) 21, 397, 570
Vha464I CTTAAG 1 cut(s) 361
VneI GTGCAC 1 cut(s) 561
VpaK11BI GGWCC 2 cut(s) 575, 1005
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 846
XspI CTAG 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.