FvH4_2g05920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002473
Physical Location & Seq
Forward (+)
4908543 .. 4911886
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05920.t2

Sequence Viewer

Length: 816 bp
ATGGAAGAGCAGCTTATCCCGCCGCTGAAATCGGATCCCGAGTTCACAAGCGAGTTGACTCGCACCATTATCTCCAACTCGGCCTCGTCCGCCTCCGTTGCTCTCGGGACTCCTGTGCATGCAGCACCGGGCATACCCATAGAGTGGACAAATGAGAAGCATAGATCGTATATAAATTCCCTAGAAACATCATTTGTTAATAAGTTGTACCAGTCCAGGCGTTTGTGGGACTGCCATCCACAAATGTATGTTCAGGGGGCACATCCATCACAAGAGTTGCCTTTCAGGACTTATAATTCTTCTGACCAGGTCCGGGAGTCAAATCTGTTCATGGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTCTAAGGAATGAAACTCCGCTGGAAAGCACTGCTGATTCTAACGTTACTGTGGAAAGGCCCAGGATGGATAATATTGTGTCTTGTTATAAGGAGATCCACTTAAGAAGGAAACCGACCTCAGAACACTTGGGTGTAACCGCAAGAAGTTCCGAGAAGAACCCTGCATTTCGTCAGGATTTAGTTGGCAGTACTGCAGAAGTTTCGGGTCAGAACTTTGTGGAGGAGGACCATAGAGGGAAGCCAAGCTGTGAATTCATACCAAAAAGGCTTAGAAGGGCAGCCGATACTTCCAGCAACGATCAACTTGTGCCATTGGGATATGATACAAAAGAGGTTTCAATGGCCCATAACGCTCCCTCCAAAGGAGAAGAACAAGAGCATCATCAATTGCTATTGGAACACCATGAGAGCTTCATCTGTCCAAAATCTATCTTTACTGTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.75

Weight (kDa)

6.32

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 294, 456
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 5 cut(s) 20, 23, 90, 386, 507
AclI AACGTT 1 cut(s) 411
AclWI GGATC 3 cut(s) 29, 42, 457
AcsI RAATTY 2 cut(s) 175, 620
AfaI GTAC 2 cut(s) 209, 559
AfiI CCNNNNNNNGG 3 cut(s) 144, 313, 731
AflII CTTAAG 1 cut(s) 469
AgsI TTSAA 1 cut(s) 708
AjnI CCWGG 3 cut(s) 215, 306, 428
AleI CACNNNNGTG 1 cut(s) 498
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 13, 615, 780
AluI AGCT 3 cut(s) 13, 615, 780
AlwI GGATC 3 cut(s) 29, 42, 457
Ama87I CYCGRG 2 cut(s) 38, 104
AoxI GGCC 3 cut(s) 81, 425, 711
ApeKI GCWGC 3 cut(s) 10, 122, 647
ApoI RAATTY 2 cut(s) 175, 620
AspS9I GGNCC 4 cut(s) 310, 426, 595, 712
AsuC2I CCSGG 2 cut(s) 129, 314
AvaI CYCGRG 2 cut(s) 38, 104
AvaII GGWCC 2 cut(s) 310, 595
BaeGI GKGCMC 1 cut(s) 262
BamHI GGATCC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 22, 134, 659
BccI CCATC 3 cut(s) 243, 274, 427
BcgI CGANNNNNNTGC 2 cut(s) 552, 586
BciT130I CCWGG 3 cut(s) 217, 308, 430
BcnI CCSGG 2 cut(s) 129, 314
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 561
BfrI CTTAAG 1 cut(s) 469
BisI GCNGC 4 cut(s) 11, 23, 123, 648
BlsI GCNGC 4 cut(s) 12, 24, 124, 649
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 5 cut(s) 129, 217, 308, 314, 430
Bme18I GGWCC 2 cut(s) 310, 595
BmeT110I CYCGRG 2 cut(s) 38, 104
BmgT120I GGNCC 4 cut(s) 310, 426, 595, 712
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 5 cut(s) 129, 217, 308, 314, 430
BmsI GCATC 1 cut(s) 757
BpuMI CCSGG 2 cut(s) 129, 314
BsaJI CCNNGG 1 cut(s) 428
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 313, 731
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 3 cut(s) 217, 308, 430
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 3 cut(s) 235, 262, 438
BseLI CCNNNNNNNGG 3 cut(s) 144, 313, 731
BseMII CTCAG 2 cut(s) 368, 501
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 3 cut(s) 22, 134, 659
BshFI GGCC 3 cut(s) 83, 427, 713
BsiHKCI CYCGRG 2 cut(s) 38, 104
BsiSI CCGG 2 cut(s) 128, 313
BslFI GGGAC 2 cut(s) 121, 242
BslI CCNNNNNNNGG 3 cut(s) 144, 313, 731
BsmFI GGGAC 2 cut(s) 121, 242
BsnI GGCC 3 cut(s) 83, 427, 713
BsoBI CYCGRG 2 cut(s) 38, 104
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 5 cut(s) 34, 164, 360, 462, 667
BspACI CCGC 5 cut(s) 20, 23, 90, 386, 507
BspANI GGCC 3 cut(s) 83, 427, 713
BspCNI CTCAG 2 cut(s) 367, 500
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 565
BspPI GGATC 3 cut(s) 29, 42, 457
BspTI CTTAAG 1 cut(s) 469
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 5 cut(s) 34, 164, 360, 462, 667
Bst2UI CCWGG 3 cut(s) 217, 308, 430
Bst4CI ACNGT 2 cut(s) 418, 808
BstAFI CTTAAG 1 cut(s) 469
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 5 cut(s) 354, 371, 487, 638, 813
BstF5I GGATG 3 cut(s) 235, 262, 438
BstKTI GATC 5 cut(s) 37, 167, 363, 465, 670
BstMBI GATC 5 cut(s) 34, 164, 360, 462, 667
BstMWI GCNNNNNNNGC 4 cut(s) 19, 89, 98, 719
BstNI CCWGG 3 cut(s) 217, 308, 430
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 5 cut(s) 127, 215, 306, 312, 428
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 3 cut(s) 22, 134, 659
BstX2I RGATCY 2 cut(s) 34, 462
BstYI RGATCY 2 cut(s) 34, 462
BsuRI GGCC 3 cut(s) 83, 427, 713
BtsCI GGATG 3 cut(s) 235, 262, 438
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 4 cut(s) 310, 426, 595, 712
CsiI ACCWGGT 1 cut(s) 306
Csp6I GTAC 2 cut(s) 208, 558
CviAII CATG 3 cut(s) 119, 331, 773
CviJI RGCY 9 cut(s) 13, 83, 427, 610, 615, 637, 650, 713, 780
CviKI_1 RGCY 9 cut(s) 13, 83, 427, 610, 615, 637, 650, 713, 780
CviQI GTAC 2 cut(s) 208, 558
DdeI CTNAG 5 cut(s) 354, 371, 487, 638, 813
DpnI GATC 5 cut(s) 36, 166, 362, 464, 669
DpnII GATC 5 cut(s) 34, 164, 360, 462, 667
EciI GGCGGA 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 310, 595
Eco88I CYCGRG 2 cut(s) 38, 104
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 3 cut(s) 215, 306, 428
FaeI CATG 3 cut(s) 122, 334, 776
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 2 cut(s) 121, 242
FatI CATG 3 cut(s) 118, 330, 772
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 11, 23, 123, 648
FokI GGATG 3 cut(s) 222, 249, 445
Fsp4HI GCNGC 4 cut(s) 11, 23, 123, 648
FspBI CTAG 1 cut(s) 182
GluI GCNGC 4 cut(s) 11, 23, 123, 648
HaeIII GGCC 3 cut(s) 83, 427, 713
HapII CCGG 2 cut(s) 128, 313
Hin1II CATG 3 cut(s) 122, 334, 776
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 4 cut(s) 58, 109, 317, 404
HpaII CCGG 2 cut(s) 128, 313
Hpy166II GTNNAC 3 cut(s) 45, 57, 147
Hpy188I TCNGA 6 cut(s) 34, 304, 357, 490, 520, 579
Hpy188III TCNNGA 5 cut(s) 38, 106, 286, 341, 542
Hpy8I GTNNAC 3 cut(s) 45, 57, 147
HpyAV CCTTC 2 cut(s) 468, 636
HpyCH4III ACNGT 2 cut(s) 418, 808
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 118, 122, 533, 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 89, 98, 719
HpyF3I CTNAG 5 cut(s) 354, 371, 487, 638, 813
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 3 cut(s) 122, 334, 776
Kzo9I GATC 5 cut(s) 34, 164, 360, 462, 667
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 3 cut(s) 22, 134, 659
LweI GCATC 1 cut(s) 757
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 412, 502
MalI GATC 5 cut(s) 36, 166, 362, 464, 669
MboI GATC 5 cut(s) 34, 164, 360, 462, 667
MboII GAAGA 5 cut(s) 17, 291, 370, 535, 749
MfeI CAATTG 1 cut(s) 755
MflI RGATCY 2 cut(s) 34, 462
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 4 cut(s) 175, 295, 620, 755
MlyI GAGTC 3 cut(s) 52, 103, 326
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 8 cut(s) 94, 103, 496, 583, 586, 596, 694, 736
MseI TTAA 2 cut(s) 198, 470
MslI CAYNNNNRTG 1 cut(s) 498
MspA1I CMGCKG 2 cut(s) 25, 388
MspCI CTTAAG 1 cut(s) 469
MspI CCGG 2 cut(s) 128, 313
MspR9I CCNGG 5 cut(s) 129, 217, 308, 314, 430
MunI CAATTG 1 cut(s) 755
MvaI CCWGG 3 cut(s) 217, 308, 430
MwoI GCNNNNNNNGC 4 cut(s) 19, 89, 98, 719
NciI CCSGG 2 cut(s) 129, 314
NdeII GATC 5 cut(s) 34, 164, 360, 462, 667
NlaIII CATG 3 cut(s) 122, 334, 776
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 59
NspI RCATGY 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 498
PaeI GCATGC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 346
PfeI GAWTC 1 cut(s) 404
PflFI GACNNNGTC 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 4 cut(s) 12, 24, 124, 649
PleI GAGTC 3 cut(s) 52, 103, 325
PpsI GAGTC 3 cut(s) 52, 103, 325
PsiI TTATAA 2 cut(s) 294, 456
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 3 cut(s) 215, 306, 428
PspGI CCWGG 3 cut(s) 215, 306, 428
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 4 cut(s) 310, 426, 595, 712
PstI CTGCAG 1 cut(s) 565
PsuI RGATCY 2 cut(s) 34, 462
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 2 cut(s) 209, 559
RsaNI GTAC 2 cut(s) 208, 558
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 2 cut(s) 198, 470
SatI GCNGC 4 cut(s) 11, 23, 123, 648
Sau3AI GATC 5 cut(s) 34, 164, 360, 462, 667
Sau96I GGNCC 4 cut(s) 310, 426, 595, 712
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 3 cut(s) 52, 103, 326
ScrFI CCNGG 5 cut(s) 129, 217, 308, 314, 430
SduI GDGCHC 1 cut(s) 262
SetI ASST 7 cut(s) 15, 312, 414, 488, 617, 705, 782
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 1 cut(s) 757
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 2 cut(s) 310, 595
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SphI GCATGC 1 cut(s) 122
Sse9I AATT 4 cut(s) 175, 295, 620, 755
SsiI CCGC 5 cut(s) 20, 23, 90, 386, 507
SspI AATATT 1 cut(s) 442
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 5 cut(s) 127, 215, 306, 312, 428
TaaI ACNGT 2 cut(s) 418, 808
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 340
TasI AATT 4 cut(s) 175, 295, 620, 755
TatI WGTACW 1 cut(s) 557
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 2 cut(s) 198, 470
Tru9I TTAA 2 cut(s) 198, 470
TscAI CASTG 1 cut(s) 403
TseI GCWGC 3 cut(s) 10, 122, 647
TspDTI ATGAA 4 cut(s) 319, 393, 613, 772
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 308
Van91I CCANNNNNTGG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 469
VpaK11BI GGWCC 2 cut(s) 310, 595
XapI RAATTY 2 cut(s) 175, 620
XceI RCATGY 1 cut(s) 122
XspI CTAG 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.