Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002473

Physical Location & Seq

Genomic Coordinates Forward (+)

48335473 .. 48338931

Gene Structure 3459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTCAAATGTACAGGAGGTGCAACAACGGGCACATCCACAGAGTGGACAAATGAGAAGCACAGATCATATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGGAGTCAAATCTGTTCATTGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTCCTAGGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAACGTTACTATGGAAAGGCCCCGGATGGATCATATAGTGTCTTGTTATAAGGGGACCCACCTAAGAAGGAAACCAACCTCAGAACACTCAGGTGTAATCGCAAGAACTTCAGAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTTGGGTCAGAATTTTGTGGATGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACAAAAAAGGCTTAAAAGGGCTTCAACCAACTCTTCCAGCAATGATCAACTTGTGCCATTGGGAAATTTTGATACAAAGGAGGTTTCAATGGCCCATAATGCTCCCTCCGGAAGAGAAGAAGAAGGGCATCATCAGTTGCTATTAGAGCACCGTGAGAGCTTCATCTGTCCAAAATCTATCTTCACTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.89

Weight (kDa)

6.76

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33980 AT4G33980
fragaria_vesca	FvH4_2g05920 FvH4_2g05920 FvH4_2g05920
malus_domestica	MD05G1081700.v1.1
prunus_persica	Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1
pyrus_communis	pycom05g07650
rosa_chinensis	RchiOBHm_Chr6g0257491
rosa_laevigata	RLG00000014702
rosa_multiflora	Rmu_sc0004564.1_g000004 Rmu_sc0010794.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208810
rosa_rugosa	Rorug02G0320800 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh2CG357100 Rh2DG395200 Rh6AG089100 Rh6BG080900 Rh6CG077700 Rh6DG073300
rosa_wichuraiana	Rw2G030360 Rw6G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	1 cut(s)	192
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	1 cut(s)	237
AcsI	RAATTY	4 cut(s)	76, 373, 413, 484
AcuI	CTGAAG	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	444, 507
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	2 cut(s)	403, 579
AluI	AGCT	2 cut(s)	403, 579
Alw21I	GWGCWC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	2 cut(s)	218, 510
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	4 cut(s)	76, 373, 413, 484
AspA2I	CCTAGG	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	219, 255, 511
AsuC2I	CCSGG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	255
AvrII	CCTAGG	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	220
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	223
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	354
BisI	GCNGC	1 cut(s)	354
BlnI	CCTAGG	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	3 cut(s)	219, 255, 511
BmiI	GGNNCC	3 cut(s)	221, 256, 257
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	164, 221
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	466
BseAI	TCCGGA	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	164, 221
BseGI	GGATG	3 cut(s)	35, 231, 388
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	3 cut(s)	161, 294, 303
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	2 cut(s)	220, 512
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	223, 528
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	220, 512
Bsp1286I	GDGCHC	2 cut(s)	35, 570
Bsp13I	TCCGGA	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	65, 153, 229, 463
BspACI	CCGC	1 cut(s)	192
BspANI	GGCC	2 cut(s)	220, 512
BspCNI	CTCAG	3 cut(s)	160, 293, 302
BspEI	TCCGGA	1 cut(s)	527
BspLI	GGNNCC	3 cut(s)	221, 256, 257
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	164, 221
BssMI	GATC	4 cut(s)	65, 153, 229, 463
BssT1I	CCWWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	410, 572
Bst6I	CTCTTC	2 cut(s)	457, 526
BstAUI	TGTACA	1 cut(s)	11
BstDEI	CTNAG	6 cut(s)	82, 147, 263, 280, 289, 612
BstF5I	GGATG	3 cut(s)	35, 231, 388
BstKTI	GATC	4 cut(s)	68, 156, 232, 466
BstMBI	GATC	4 cut(s)	65, 153, 229, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 565
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	220, 512
BtsCI	GGATG	3 cut(s)	35, 231, 388
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	355, 603
Cfr13I	GGNCC	3 cut(s)	219, 255, 511
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	6 cut(s)	220, 403, 430, 440, 512, 579
CviKI_1	RGCY	6 cut(s)	220, 403, 430, 440, 512, 579
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	6 cut(s)	82, 147, 263, 280, 289, 612
DpnI	GATC	4 cut(s)	67, 155, 231, 465
DpnII	GATC	4 cut(s)	65, 153, 229, 463
DraIII	CACNNNGTG	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	457, 526
EarI	CTCTTC	2 cut(s)	457, 526
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	2 cut(s)	219, 255
EcoRI	GAATTC	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	330
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	326
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	3 cut(s)	22, 238, 395
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	220, 512
HapII	CCGG	2 cut(s)	223, 528
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	4 cut(s)	110, 197, 338, 608
HpaII	CCGG	2 cut(s)	223, 528
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	4 cut(s)	150, 283, 313, 372
Hpy188III	TCNNGA	3 cut(s)	134, 335, 528
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	261, 536
HpyCH4III	ACNGT	2 cut(s)	410, 572
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	23, 326, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 565
HpyF3I	CTNAG	6 cut(s)	82, 147, 263, 280, 289, 612
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	330
KflI	GGGWCCC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	65, 153, 229, 463
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	7 cut(s)	167, 236, 276, 320, 336, 469, 541
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	4 cut(s)	67, 155, 231, 465
MboI	GATC	4 cut(s)	65, 153, 229, 463
MboII	GAAGA	6 cut(s)	163, 444, 543, 548, 551, 592
MhlI	GDGCHC	2 cut(s)	35, 570
MluCI	AATT	5 cut(s)	76, 104, 373, 413, 484
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	11, 289, 379, 389, 493, 535
MroI	TCCGGA	1 cut(s)	527
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	223, 528
MspR9I	CCNGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	518, 565
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	65, 153, 229, 463
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	3 cut(s)	221, 256, 257
NspI	RCATGY	1 cut(s)	330
OliI	CACNNNNGTG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	197, 338, 608
PflMI	CCANNNNNTGG	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	249
Psp1406I	AACGTT	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	255
PspN4I	GGNNCC	3 cut(s)	221, 256, 257
PspPI	GGNCC	3 cut(s)	219, 255, 511
PspPPI	RGGWCCY	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	4 cut(s)	65, 153, 229, 463
Sau96I	GGNCC	3 cut(s)	219, 255, 511
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	35, 570
SetI	ASST	8 cut(s)	22, 207, 264, 281, 295, 405, 504, 581
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	5 cut(s)	76, 104, 373, 413, 484
SsiI	CCGC	1 cut(s)	192
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	410, 572
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	133
TasI	AATT	5 cut(s)	76, 104, 373, 413, 484
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	197, 338, 608
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	2 cut(s)	355, 610
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	112, 186, 406, 571
TspRI	CASTG	2 cut(s)	355, 610
Van91I	CCANNNNNTGG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	4 cut(s)	76, 373, 413, 484
XceI	RCATGY	1 cut(s)	330
XmaJI	CCTAGG	1 cut(s)	164
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.