Rroxscaffold_7G00208810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002473
Physical Location & Seq
Reverse (-)
58962043 .. 58965736
3694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208810.1

Sequence Viewer

Length: 819 bp
ATGGAAGGGCATATTCCGCCTCTGAATTCGGATCCCGAGTTCCGGAGCGAGTTGACTCGGACCGGCGGCTCCAACCCGGCGTCGTCTTCCTTCGTTCCTCTTCGGACTTGCGCGCATGCAACACCGGGCACATCCACAGAGTGGACAAATGAGAAGCACAGATCGTTTATAAATTCCTTAGAAACATCATTTGTAAATAAATTGCACCATTCCAGGCATTTGTGGGACTGCCATCCACAAAAGTATGTTCAGGGGATACATCCATCAGAAGAGTTGCCTTTCAAGACTTATAATTCTTCTGACCAGGTCAGGGAGTCAAATCTGTTCATTGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTCCAAGGAATGAAACTCTGCTGGAAAGCACTGCGGATTCTAACATTACTATGGAAAGGCCCCGGATGGATCATATAGTGTCTTGTAATAAGGGTACCCACCTAAGAAGGAAACCGATCTCAGAACACTCAGGTGTAATCGCAAGAACTTCAGAGCACAACCCTGCATGTTATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTCGGGTCAGAACTTTGTGGATGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATGCCAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAGCTTGTGCCATTGGGAAATTTTGATACAAAGGAGGTTTCAATGGCCCATAATGCTCCCTCCGGAAGAGAAGAACAAGGGCATCATCAGTTGCTATTAGAGCACCGTGAGTGCTTCATCTGTCCAAAATCTATCTGCACTGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.65

Weight (kDa)

6.76

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 170, 291
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 2 cut(s) 42, 731
AciI CCGC 3 cut(s) 17, 66, 398
AclWI GGATC 3 cut(s) 26, 39, 441
AcsI RAATTY 4 cut(s) 25, 172, 617, 688
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 3 cut(s) 42, 141, 310
AgsI TTSAA 2 cut(s) 283, 711
AjnI CCWGG 2 cut(s) 212, 303
AleI CACNNNNGTG 1 cut(s) 495
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 607, 673
AluI AGCT 2 cut(s) 607, 673
Alw21I GWGCWC 2 cut(s) 522, 774
AlwI GGATC 3 cut(s) 26, 39, 441
Ama87I CYCGRG 1 cut(s) 35
Aor13HI TCCGGA 2 cut(s) 42, 731
AoxI GGCC 2 cut(s) 422, 714
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 4 cut(s) 25, 172, 617, 688
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 2 cut(s) 113, 115
AspS9I GGNCC 3 cut(s) 60, 423, 715
AsuC2I CCSGG 3 cut(s) 77, 126, 427
AsuHPI GGTGA 1 cut(s) 639
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 522, 774
BbvI GCAGC 1 cut(s) 544
BccI CCATC 3 cut(s) 240, 271, 424
BcgI CGANNNNNNTGC 2 cut(s) 549, 583
BciT130I CCWGG 2 cut(s) 214, 305
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 3 cut(s) 77, 126, 427
BfmI CTRYAG 1 cut(s) 558
BfuI GTATCC 1 cut(s) 249
BglI GCCNNNNNGGC 1 cut(s) 631
BisI GCNGC 2 cut(s) 67, 558
BlsI GCNGC 2 cut(s) 68, 559
Bme1390I CCNGG 5 cut(s) 77, 126, 214, 305, 427
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 60, 423, 715
BmiI GGNNCC 4 cut(s) 33, 70, 425, 460
BmrFI CCNGG 5 cut(s) 77, 126, 214, 305, 427
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 1 cut(s) 78
BpuMI CCSGG 3 cut(s) 77, 126, 427
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 368, 425
BsaWI WCCGGW 2 cut(s) 42, 731
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 141, 310
Bse118I RCCGGY 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 670
BseAI TCCGGA 2 cut(s) 42, 731
BseBI CCWGG 2 cut(s) 214, 305
BseDI CCNNGG 2 cut(s) 368, 425
BseGI GGATG 5 cut(s) 131, 232, 259, 435, 592
BseLI CCNNNNNNNGG 3 cut(s) 42, 141, 310
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 3 cut(s) 365, 498, 507
BsePI GCGCGC 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 544
BsgI GTGCAG 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 424, 716
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 522, 774
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 6 cut(s) 43, 63, 77, 125, 427, 732
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 3 cut(s) 42, 141, 310
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 424, 716
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 3 cut(s) 131, 522, 774
Bsp13I TCCGGA 2 cut(s) 42, 731
Bsp143I GATC 6 cut(s) 31, 161, 357, 433, 480, 667
BspACI CCGC 3 cut(s) 17, 66, 398
BspANI GGCC 2 cut(s) 424, 716
BspCNI CTCAG 3 cut(s) 364, 497, 506
BspEI TCCGGA 2 cut(s) 42, 731
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 4 cut(s) 33, 70, 425, 460
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 3 cut(s) 26, 39, 441
BspT107I GGYRCC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 368, 425
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 6 cut(s) 31, 161, 357, 433, 480, 667
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 214, 305
Bst4CI ACNGT 2 cut(s) 614, 776
Bst6I CTCTTC 4 cut(s) 105, 264, 661, 730
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 113, 117
BstDEI CTNAG 6 cut(s) 178, 351, 467, 484, 493, 816
BstF5I GGATG 5 cut(s) 131, 232, 259, 435, 592
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 115
BstKTI GATC 6 cut(s) 34, 164, 360, 436, 483, 670
BstMBI GATC 6 cut(s) 31, 161, 357, 433, 480, 667
BstMWI GCNNNNNNNGC 4 cut(s) 16, 631, 722, 769
BstNI CCWGG 2 cut(s) 214, 305
BstNSI RCATGY 2 cut(s) 119, 534
BstSCI CCNGG 5 cut(s) 75, 124, 212, 303, 425
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 424, 716
BtsCI GGATG 5 cut(s) 131, 232, 259, 435, 592
BtsI GCAGTG 2 cut(s) 393, 559
BtsIMutI CAGTG 3 cut(s) 393, 559, 807
Cac8I GCNNGC 2 cut(s) 113, 117
CfoI GCGC 2 cut(s) 113, 115
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 60, 423, 715
CpoI CGGWCCG 1 cut(s) 60
CseI GACGC 1 cut(s) 69
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 459
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 3 cut(s) 116, 531, 622
CviJI RGCY 7 cut(s) 69, 424, 607, 634, 644, 673, 716
CviKI_1 RGCY 7 cut(s) 69, 424, 607, 634, 644, 673, 716
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 6 cut(s) 178, 351, 467, 484, 493, 816
DpnI GATC 6 cut(s) 33, 163, 359, 435, 482, 669
DpnII GATC 6 cut(s) 31, 161, 357, 433, 480, 667
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 4 cut(s) 105, 264, 661, 730
EarI CTCTTC 4 cut(s) 105, 264, 661, 730
EciI GGCGGA 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 423
EcoRI GAATTC 2 cut(s) 25, 617
EcoRII CCWGG 2 cut(s) 212, 303
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 3 cut(s) 119, 534, 625
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 115, 530, 621
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 67, 558
FokI GGATG 5 cut(s) 118, 219, 246, 442, 599
Fsp4HI GCNGC 2 cut(s) 67, 558
GlaI GCGC 2 cut(s) 112, 114
GluI GCNGC 2 cut(s) 67, 558
HaeIII GGCC 2 cut(s) 424, 716
HapII CCGG 6 cut(s) 43, 63, 77, 125, 427, 732
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 113, 115
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 119, 534, 625
Hin6I GCGC 2 cut(s) 111, 113
HinP1I GCGC 2 cut(s) 111, 113
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 5 cut(s) 55, 314, 401, 542, 812
HpaII CCGG 6 cut(s) 43, 63, 77, 125, 427, 732
HphI GGTGA 1 cut(s) 639
Hpy166II GTNNAC 2 cut(s) 54, 144
Hpy188III TCNNGA 6 cut(s) 35, 43, 283, 338, 539, 732
Hpy8I GTNNAC 2 cut(s) 54, 144
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 100, 465
HpyCH4III ACNGT 2 cut(s) 614, 776
HpyCH4V TGCA 5 cut(s) 119, 205, 530, 560, 807
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 631, 722, 769
HpyF3I CTNAG 6 cut(s) 178, 351, 467, 484, 493, 816
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 119, 534, 625
HspAI GCGC 2 cut(s) 111, 113
Kpn2I TCCGGA 2 cut(s) 42, 731
KpnI GGTACC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 6 cut(s) 31, 161, 357, 433, 480, 667
LmnI GCTCC 3 cut(s) 45, 74, 730
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 760
MabI ACCWGGT 1 cut(s) 303
MalI GATC 6 cut(s) 33, 163, 359, 435, 482, 669
MboI GATC 6 cut(s) 31, 161, 357, 433, 480, 667
MboII GAAGA 8 cut(s) 78, 92, 281, 288, 367, 648, 747, 752
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 3 cut(s) 131, 522, 774
MluCI AATT 6 cut(s) 25, 172, 200, 292, 617, 688
MlyI GAGTC 2 cut(s) 49, 323
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 6 cut(s) 30, 108, 583, 593, 697, 739
MroI TCCGGA 2 cut(s) 42, 731
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 2 cut(s) 413, 495
MspI CCGG 6 cut(s) 43, 63, 77, 125, 427, 732
MspR9I CCNGG 5 cut(s) 77, 126, 214, 305, 427
MvaI CCWGG 2 cut(s) 214, 305
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 16, 631, 722, 769
NciI CCSGG 3 cut(s) 77, 126, 427
NdeII GATC 6 cut(s) 31, 161, 357, 433, 480, 667
NlaIII CATG 3 cut(s) 119, 534, 625
NlaIV GGNNCC 4 cut(s) 33, 70, 425, 460
NspI RCATGY 2 cut(s) 119, 534
OliI CACNNNNGTG 1 cut(s) 495
PaeI GCATGC 1 cut(s) 119
PauI GCGCGC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PfeI GAWTC 3 cut(s) 401, 542, 812
PflFI GACNNNGTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 68, 559
PleI GAGTC 2 cut(s) 49, 322
PpsI GAGTC 2 cut(s) 49, 322
PsiI TTATAA 2 cut(s) 170, 291
Psp6I CCWGG 2 cut(s) 212, 303
PspGI CCWGG 2 cut(s) 212, 303
PspN4I GGNNCC 4 cut(s) 33, 70, 425, 460
PspPI GGNCC 3 cut(s) 60, 423, 715
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 305
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 2 cut(s) 413, 495
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 2 cut(s) 67, 558
Sau3AI GATC 6 cut(s) 31, 161, 357, 433, 480, 667
Sau96I GGNCC 3 cut(s) 60, 423, 715
SchI GAGTC 2 cut(s) 49, 323
ScrFI CCNGG 5 cut(s) 77, 126, 214, 305, 427
SduI GDGCHC 3 cut(s) 131, 522, 774
SetI ASST 6 cut(s) 309, 468, 499, 609, 675, 708
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 2 cut(s) 413, 495
SphI GCATGC 1 cut(s) 119
Sse9I AATT 6 cut(s) 25, 172, 200, 292, 617, 688
SsiI CCGC 3 cut(s) 17, 66, 398
StyD4I CCNGG 5 cut(s) 75, 124, 212, 303, 425
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 2 cut(s) 614, 776
TaqI TCGA 1 cut(s) 337
TasI AATT 6 cut(s) 25, 172, 200, 292, 617, 688
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 3 cut(s) 401, 542, 812
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 3 cut(s) 400, 559, 814
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 4 cut(s) 316, 390, 610, 775
TspRI CASTG 3 cut(s) 400, 559, 814
Tth111I GACNNNGTC 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 4 cut(s) 25, 172, 617, 688
XceI RCATGY 2 cut(s) 119, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.