Rw6G007810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002473
Physical Location & Seq
Forward (+)
13010233 .. 13013723
3491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007810.1

Sequence Viewer

Length: 801 bp
ATGGAAGAGCATATTCCTCCGCCGAATTCGGATCCCGAGTTCAGGAGCGAGTTGACTCGGACCGGCGGCTCCAACTCGGCGTCGTCCTCCTTCGTTGCTCTTCGGACTTGCGCGCATGCAACACCGGGCACAGCCACAGAGTGGACAAATGAGAAGCACAGTTCGTATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGTACCATTCCAGGCATTTGCGGGACTGCCATCCACAAAAGTATGTTCAGGGGATACATCCATCAGAAGAGTTGCCTTTCAAGACTTATAATTCTTCTGACCAGTTCATTGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTCCAAGGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAACGTTACTATGGAAAGGCCCCGGATGGATCATATAGTGTCTTGTTATAAAGGGACCCACCTAAGAAGGAAACCGACCTCAGAACACTCAGGTGTAATCGCAAGAACTTCAGAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTTGGGTCAGAACTTTGTGGTTGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACCAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAACTTGTGCCATTGGGAAATTTTGATACAAAGGAGCTTTCAATGGTCCATAATACTCCCTCCGGAAGAGAAGAACAAGGGCATCATCAGTTGCTATTAGAGCACCGTGAGTGCTTCATCTGTCCAAAATCTATCTGCACTGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.95

Weight (kDa)

6.73

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 291, 435
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 713
AciI CCGC 4 cut(s) 20, 66, 223, 378
AclI AACGTT 1 cut(s) 390
AclWI GGATC 3 cut(s) 26, 39, 423
AcsI RAATTY 4 cut(s) 25, 172, 599, 670
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 42, 141
AgsI TTSAA 2 cut(s) 283, 693
AjnI CCWGG 1 cut(s) 212
AleI CACNNNNGTG 1 cut(s) 477
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 589, 688
AluI AGCT 2 cut(s) 589, 688
Alw21I GWGCWC 1 cut(s) 756
AlwI GGATC 3 cut(s) 26, 39, 423
Ama87I CYCGRG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 713
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 4 cut(s) 25, 172, 599, 670
AspLEI GCGC 2 cut(s) 113, 115
AspS9I GGNCC 4 cut(s) 60, 405, 441, 697
AsuC2I CCSGG 2 cut(s) 126, 409
AsuHPI GGTGA 1 cut(s) 621
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 3 cut(s) 60, 441, 697
BaeGI GKGCMC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 1 cut(s) 526
BccI CCATC 3 cut(s) 240, 271, 406
BciT130I CCWGG 1 cut(s) 214
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 2 cut(s) 126, 409
BfmI CTRYAG 1 cut(s) 540
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 2 cut(s) 67, 540
BlsI GCNGC 2 cut(s) 68, 541
Bme1390I CCNGG 3 cut(s) 126, 214, 409
Bme18I GGWCC 3 cut(s) 60, 441, 697
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 4 cut(s) 60, 405, 441, 697
BmiI GGNNCC 5 cut(s) 33, 70, 407, 442, 443
BmrFI CCNGG 3 cut(s) 126, 214, 409
BmsI GCATC 1 cut(s) 742
BpuMI CCSGG 2 cut(s) 126, 409
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 350, 407
BsaWI WCCGGW 1 cut(s) 713
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 141
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 652
BseAI TCCGGA 1 cut(s) 713
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 350, 407
BseGI GGATG 3 cut(s) 232, 259, 417
BseLI CCNNNNNNNGG 2 cut(s) 42, 141
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 3 cut(s) 347, 480, 489
BseNI ACTGG 1 cut(s) 304
BsePI GCGCGC 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 526
BsgI GTGCAG 1 cut(s) 772
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 756
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 4 cut(s) 63, 125, 409, 714
BslFI GGGAC 2 cut(s) 239, 454
BslI CCNNNNNNNGG 2 cut(s) 42, 141
BsmFI GGGAC 2 cut(s) 239, 454
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 131, 756
Bsp13I TCCGGA 1 cut(s) 713
Bsp143I GATC 4 cut(s) 31, 339, 415, 649
BspACI CCGC 4 cut(s) 20, 66, 223, 378
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 3 cut(s) 346, 479, 488
BspEI TCCGGA 1 cut(s) 713
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 5 cut(s) 33, 70, 407, 442, 443
BspMAI CTGCAG 1 cut(s) 544
BspPI GGATC 3 cut(s) 26, 39, 423
BspQI GCTCTTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 350, 407
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 4 cut(s) 31, 339, 415, 649
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 3 cut(s) 161, 596, 758
Bst6I CTCTTC 4 cut(s) 105, 264, 643, 712
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 113, 117
BstDEI CTNAG 6 cut(s) 178, 333, 449, 466, 475, 798
BstF5I GGATG 3 cut(s) 232, 259, 417
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 115
BstKTI GATC 4 cut(s) 34, 342, 418, 652
BstMBI GATC 4 cut(s) 31, 339, 415, 649
BstMWI GCNNNNNNNGC 1 cut(s) 751
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 2 cut(s) 119, 516
BstSCI CCNGG 3 cut(s) 124, 212, 407
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 406
BtsCI GGATG 3 cut(s) 232, 259, 417
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 541, 789
Cac8I GCNNGC 2 cut(s) 113, 117
CfoI GCGC 2 cut(s) 113, 115
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 4 cut(s) 60, 405, 441, 697
CpoI CGGWCCG 1 cut(s) 60
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 205
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 2 cut(s) 116, 513
CviJI RGCY 7 cut(s) 69, 134, 406, 589, 616, 626, 688
CviKI_1 RGCY 7 cut(s) 69, 134, 406, 589, 616, 626, 688
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 6 cut(s) 178, 333, 449, 466, 475, 798
DpnI GATC 4 cut(s) 33, 341, 417, 651
DpnII GATC 4 cut(s) 31, 339, 415, 649
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 4 cut(s) 105, 264, 643, 712
EarI CTCTTC 4 cut(s) 105, 264, 643, 712
EciI GGCGGA 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 3 cut(s) 60, 441, 697
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 2 cut(s) 405, 441
EcoRI GAATTC 2 cut(s) 25, 599
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 2 cut(s) 119, 516
FaqI GGGAC 2 cut(s) 239, 454
FatI CATG 2 cut(s) 115, 512
FauI CCCGC 1 cut(s) 216
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 2 cut(s) 67, 540
FokI GGATG 3 cut(s) 219, 246, 424
Fsp4HI GCNGC 2 cut(s) 67, 540
GlaI GCGC 2 cut(s) 112, 114
GluI GCNGC 2 cut(s) 67, 540
HaeIII GGCC 1 cut(s) 406
HapII CCGG 4 cut(s) 63, 125, 409, 714
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 113, 115
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 119, 516
Hin6I GCGC 2 cut(s) 111, 113
HinP1I GCGC 2 cut(s) 111, 113
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 4 cut(s) 55, 383, 524, 794
HpaII CCGG 4 cut(s) 63, 125, 409, 714
HphI GGTGA 1 cut(s) 621
Hpy166II GTNNAC 2 cut(s) 54, 144
Hpy188I TCNGA 9 cut(s) 31, 60, 105, 268, 301, 336, 469, 499, 558
Hpy188III TCNNGA 6 cut(s) 35, 43, 283, 320, 521, 714
Hpy8I GTNNAC 2 cut(s) 54, 144
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 100, 447
HpyCH4III ACNGT 3 cut(s) 161, 596, 758
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 4 cut(s) 119, 512, 542, 789
HpyF10VI GCNNNNNNNGC 1 cut(s) 751
HpyF3I CTNAG 6 cut(s) 178, 333, 449, 466, 475, 798
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 119, 516
HspAI GCGC 2 cut(s) 111, 113
KflI GGGWCCC 1 cut(s) 441
Kpn2I TCCGGA 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 4 cut(s) 31, 339, 415, 649
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 3 cut(s) 45, 74, 685
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 1 cut(s) 742
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 391
MalI GATC 4 cut(s) 33, 341, 417, 651
MboI GATC 4 cut(s) 31, 339, 415, 649
MboII GAAGA 8 cut(s) 17, 92, 281, 288, 349, 630, 729, 734
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 131, 756
MluCI AATT 6 cut(s) 25, 172, 200, 292, 599, 670
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 6 cut(s) 27, 97, 475, 565, 575, 721
MroI TCCGGA 1 cut(s) 713
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 4 cut(s) 63, 125, 409, 714
MspR9I CCNGG 3 cut(s) 126, 214, 409
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 751
NciI CCSGG 2 cut(s) 126, 409
NdeII GATC 4 cut(s) 31, 339, 415, 649
NlaIII CATG 2 cut(s) 119, 516
NlaIV GGNNCC 5 cut(s) 33, 70, 407, 442, 443
NmeAIII GCCGAG 1 cut(s) 56
NspI RCATGY 2 cut(s) 119, 516
OliI CACNNNNGTG 1 cut(s) 477
PaeI GCATGC 1 cut(s) 119
PauI GCGCGC 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PfeI GAWTC 3 cut(s) 383, 524, 794
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 68, 541
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 441
PsiI TTATAA 2 cut(s) 291, 435
Psp1406I AACGTT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 5 cut(s) 33, 70, 407, 442, 443
PspPI GGNCC 4 cut(s) 60, 405, 441, 697
PspPPI RGGWCCY 1 cut(s) 441
PstI CTGCAG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 31
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 477
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 2 cut(s) 67, 540
Sau3AI GATC 4 cut(s) 31, 339, 415, 649
Sau96I GGNCC 4 cut(s) 60, 405, 441, 697
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 3 cut(s) 126, 214, 409
SduI GDGCHC 2 cut(s) 131, 756
SetI ASST 6 cut(s) 393, 450, 467, 481, 591, 690
SfaNI GCATC 1 cut(s) 742
SfcI CTRYAG 1 cut(s) 540
SinI GGWCC 3 cut(s) 60, 441, 697
SmiMI CAYNNNNRTG 1 cut(s) 477
SphI GCATGC 1 cut(s) 119
Sse9I AATT 6 cut(s) 25, 172, 200, 292, 599, 670
SsiI CCGC 4 cut(s) 20, 66, 223, 378
StyD4I CCNGG 3 cut(s) 124, 212, 407
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 3 cut(s) 161, 596, 758
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 319
TasI AATT 6 cut(s) 25, 172, 200, 292, 599, 670
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 3 cut(s) 383, 524, 794
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 2 cut(s) 541, 796
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 4 cut(s) 298, 372, 592, 757
TspRI CASTG 2 cut(s) 541, 796
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 3 cut(s) 60, 441, 697
XapI RAATTY 4 cut(s) 25, 172, 599, 670
XceI RCATGY 2 cut(s) 119, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.