Rh6CG077700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002473
Physical Location & Seq
Forward (+)
8139224 .. 8143857
4634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG077700.1

Sequence Viewer

Length: 612 bp
ATGGAAGAGCATATTCCTCCGCCGAATTCGGATCCCGAGTTCAGGAGCGAGTTGACTCGGACCGGCGGGTCCAACTCGGCGTCGTCCTCCTTCGTTGCTCTTCGGACTTGCGCGCATGCGACACCGGGCACATCCACAGAGTGGACAAATGAGAAGCACAGATCGTATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGTACCATTCCAGGCATTTGCGGGACTGCCATCCACAAAAGTATGTTCAGGGGATACATCCATCAGAAGAGTTGCCTTTCAAGACTTATAATTCTTCTGACCAGTTCATTGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTCCAAGGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAACGTTACTATGGAAAGGCCCCGGATGGATCATATAGCGTCTTGTTATAAGGGGACCCACCTAAGAAGGAAACCGACCTCAGAACACTCAGGTGTAATCGCAAGAACTTCAGAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGGTAACTCTCAGTCTCTGACTAACTTCCCTTGTCCGCGCAAGTTTGTCCCTTCATTTTCTTATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.87

Weight (kDa)

8.62

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 291, 435
AasI GACNNNNNNGTC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 2 cut(s) 113, 580
AciI CCGC 5 cut(s) 20, 66, 223, 378, 578
AclI AACGTT 1 cut(s) 390
AclWI GGATC 3 cut(s) 26, 39, 423
AcsI RAATTY 2 cut(s) 25, 172
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 42, 141
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 1 cut(s) 212
AleI CACNNNNGTG 1 cut(s) 477
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 3 cut(s) 26, 39, 423
AlwNI CAGNNNCTG 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 2 cut(s) 25, 172
AspLEI GCGC 3 cut(s) 113, 115, 582
AspS9I GGNCC 4 cut(s) 60, 69, 405, 441
AsuC2I CCSGG 2 cut(s) 126, 409
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 3 cut(s) 60, 69, 441
BaeGI GKGCMC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 526
BccI CCATC 3 cut(s) 240, 271, 406
BciT130I CCWGG 1 cut(s) 214
BciVI GTATCC 1 cut(s) 249
BcnI CCSGG 2 cut(s) 126, 409
BcoDI GTCTC 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 533
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme1390I CCNGG 3 cut(s) 126, 214, 409
Bme18I GGWCC 3 cut(s) 60, 69, 441
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 4 cut(s) 60, 69, 405, 441
BmiI GGNNCC 5 cut(s) 33, 70, 407, 442, 443
BmrFI CCNGG 3 cut(s) 126, 214, 409
BpuMI CCSGG 2 cut(s) 126, 409
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 350, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 141
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 350, 407
BseGI GGATG 4 cut(s) 131, 232, 259, 417
BseLI CCNNNNNNNGG 2 cut(s) 42, 141
BseMII CTCAG 4 cut(s) 347, 480, 489, 566
BseNI ACTGG 1 cut(s) 304
BsePI GCGCGC 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 526
Bsh1236I CGCG 2 cut(s) 113, 580
BshFI GGCC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 63, 125, 409
BslFI GGGAC 3 cut(s) 239, 454, 575
BslI CCNNNNNNNGG 2 cut(s) 42, 141
BsmAI GTCTC 1 cut(s) 561
BsmFI GGGAC 3 cut(s) 239, 454, 575
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 4 cut(s) 31, 161, 339, 415
BspACI CCGC 5 cut(s) 20, 66, 223, 378, 578
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 4 cut(s) 346, 479, 488, 565
BspFNI CGCG 2 cut(s) 113, 580
BspLI GGNNCC 5 cut(s) 33, 70, 407, 442, 443
BspMAI CTGCAG 1 cut(s) 544
BspMI ACCTGC 1 cut(s) 533
BspPI GGATC 3 cut(s) 26, 39, 423
BspQI GCTCTTC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 350, 407
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 4 cut(s) 31, 161, 339, 415
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 105, 264
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 113, 117
BstDEI CTNAG 6 cut(s) 178, 333, 449, 466, 475, 552
BstF5I GGATG 4 cut(s) 131, 232, 259, 417
BstFNI CGCG 2 cut(s) 113, 580
BstHHI GCGC 3 cut(s) 113, 115, 582
BstKTI GATC 4 cut(s) 34, 164, 342, 418
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 4 cut(s) 31, 161, 339, 415
BstNI CCWGG 1 cut(s) 214
BstNSI RCATGY 2 cut(s) 119, 516
BstSCI CCNGG 3 cut(s) 124, 212, 407
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 2 cut(s) 113, 580
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 406
BtsCI GGATG 4 cut(s) 131, 232, 259, 417
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 541
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 2 cut(s) 113, 117
CaiI CAGNNNCTG 1 cut(s) 559
CfoI GCGC 3 cut(s) 113, 115, 582
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 4 cut(s) 60, 69, 405, 441
CpoI CGGWCCG 1 cut(s) 60
CseI GACGC 2 cut(s) 69, 414
Csp6I GTAC 1 cut(s) 205
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 2 cut(s) 116, 513
CviJI RGCY 1 cut(s) 406
CviKI_1 RGCY 1 cut(s) 406
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 6 cut(s) 178, 333, 449, 466, 475, 552
DpnI GATC 4 cut(s) 33, 163, 341, 417
DpnII GATC 4 cut(s) 31, 161, 339, 415
DraIII CACNNNGTG 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 67
DseDI GACNNNNNNGTC 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 105, 264
EarI CTCTTC 2 cut(s) 105, 264
EciI GGCGGA 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 350
Eco47I GGWCC 3 cut(s) 60, 69, 441
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 2 cut(s) 405, 441
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 2 cut(s) 119, 516
FaqI GGGAC 3 cut(s) 239, 454, 575
FatI CATG 2 cut(s) 115, 512
FauI CCCGC 2 cut(s) 59, 216
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 4 cut(s) 118, 219, 246, 424
Fsp4HI GCNGC 1 cut(s) 540
GlaI GCGC 3 cut(s) 112, 114, 581
GluI GCNGC 1 cut(s) 540
HaeIII GGCC 1 cut(s) 406
HapII CCGG 3 cut(s) 63, 125, 409
HgaI GACGC 2 cut(s) 69, 414
HhaI GCGC 3 cut(s) 113, 115, 582
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 119, 516
Hin6I GCGC 3 cut(s) 111, 113, 580
HinP1I GCGC 3 cut(s) 111, 113, 580
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 3 cut(s) 55, 383, 524
HpaII CCGG 3 cut(s) 63, 125, 409
Hpy166II GTNNAC 2 cut(s) 54, 144
Hpy188I TCNGA 9 cut(s) 31, 60, 105, 268, 301, 336, 469, 499, 561
Hpy188III TCNNGA 5 cut(s) 35, 43, 283, 320, 521
Hpy8I GTNNAC 2 cut(s) 54, 144
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 100, 447, 603
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 512, 542
HpyF3I CTNAG 6 cut(s) 178, 333, 449, 466, 475, 552
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 119, 516
HspAI GCGC 3 cut(s) 111, 113, 580
KflI GGGWCCC 1 cut(s) 441
Kzo9I GATC 4 cut(s) 31, 161, 339, 415
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 526
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 391, 545
MalI GATC 4 cut(s) 33, 163, 341, 417
MboI GATC 4 cut(s) 31, 161, 339, 415
MboII GAAGA 5 cut(s) 17, 92, 281, 288, 349
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 4 cut(s) 25, 172, 200, 292
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 27, 97, 475
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 3 cut(s) 63, 125, 409
MspR9I CCNGG 3 cut(s) 126, 214, 409
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 2 cut(s) 113, 580
NciI CCSGG 2 cut(s) 126, 409
NdeII GATC 4 cut(s) 31, 161, 339, 415
NlaIII CATG 2 cut(s) 119, 516
NlaIV GGNNCC 5 cut(s) 33, 70, 407, 442, 443
NmeAIII GCCGAG 1 cut(s) 56
NspI RCATGY 2 cut(s) 119, 516
OliI CACNNNNGTG 1 cut(s) 477
PaeI GCATGC 1 cut(s) 119
PauI GCGCGC 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PfeI GAWTC 2 cut(s) 383, 524
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 441
PsiI TTATAA 2 cut(s) 291, 435
Psp1406I AACGTT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 5 cut(s) 33, 70, 407, 442, 443
PspPI GGNCC 4 cut(s) 60, 69, 405, 441
PspPPI RGGWCCY 1 cut(s) 441
PstI CTGCAG 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 31
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 477
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 4 cut(s) 31, 161, 339, 415
Sau96I GGNCC 4 cut(s) 60, 69, 405, 441
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 3 cut(s) 126, 214, 409
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 393, 450, 467, 481, 547
SfcI CTRYAG 1 cut(s) 540
SinI GGWCC 3 cut(s) 60, 69, 441
SmiMI CAYNNNNRTG 1 cut(s) 477
SphI GCATGC 1 cut(s) 119
Sse9I AATT 4 cut(s) 25, 172, 200, 292
SsiI CCGC 5 cut(s) 20, 66, 223, 378, 578
StyD4I CCNGG 3 cut(s) 124, 212, 407
StyI CCWWGG 1 cut(s) 350
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 319
TasI AATT 4 cut(s) 25, 172, 200, 292
TfiI GAWTC 2 cut(s) 383, 524
TscAI CASTG 1 cut(s) 541
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 3 cut(s) 298, 372, 585
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 3 cut(s) 60, 69, 441
XapI RAATTY 2 cut(s) 25, 172
XceI RCATGY 2 cut(s) 119, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.