Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002473

Physical Location & Seq

Genomic Coordinates Reverse (-)

17146336 .. 17149890

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1081700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGAGAGAATCTCCGGGAGAATACTCCTCCGGATTCGGATCCCGAGTTGACTCTCATCGTCTCCAAGTCGCCGTCCTCCTCCGCCATTACTCTCGACGCTTCCAAGGAGCTCCGGCTTCGTTGTTCGCATGCAGCTTTGGATGCATCCATGGAGTGGACAAATGAGAAGCACAAACTGTATATTAACTCTTTAGAAACATCATTTGTTAACAAGTTATACCGTTCCATGCGTTTGAGGGAGTGGAATAAACAAAAGAACGTTCGAGGAACACATTCATCTCATGAGTTGCCATTCAAGACTCAGAATTCTTCTAAGCAGTTCATGGTTCTTCAAGATGGTAGTTTGCAGAAAATCAACCTTCAAAGGAATGAAACTTTGATGGAAAGCACAGCTGATTCTCATGTTACTTTGAAGAGTCCAGGCATAAGTCATTTTCTGTCTGCAGGAAAAGGCTGCAACAGGTCATCTCCTAATCTTCGAGAGCATGTCTTGTCTTGCAGTACGGGGATCCACCTAAGAGAGAAGCTGACTTCGAAAAACATCAATGCGTCATCAAGGGAAGTATCTGGTCAGAACTTTGTGAATGAAGACGATGGAGAGAAGCTAAGAAATGAATCTGTACCAAAAAGGCATAAAAGAGCTGCGGCCGATGCTTTCAGCAATGATCAACTTGTGCCTGTGGGAAATTTTGATACTAAAGAGGTTTCAGTGGTCCATAATGTTCCCTTTGAAAGAGTAGAGCGTACAACAAATTGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.55

Weight (kDa)

8.78

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33980 AT4G33980
fragaria_vesca	FvH4_2g05920 FvH4_2g05920 FvH4_2g05920
malus_domestica	MD05G1081700.v1.1
prunus_persica	Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1
pyrus_communis	pycom05g07650
rosa_chinensis	RchiOBHm_Chr6g0257491
rosa_laevigata	RLG00000014702
rosa_multiflora	Rmu_sc0004564.1_g000004 Rmu_sc0010794.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208810
rosa_rugosa	Rorug02G0320800 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh2CG357100 Rh2DG395200 Rh6AG089100 Rh6BG080900 Rh6CG077700 Rh6DG073300
rosa_wichuraiana	Rw2G030360 Rw6G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	156
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	2 cut(s)	84, 647
AclI	AACGTT	1 cut(s)	261
AclWI	GGATC	4 cut(s)	35, 48, 505, 518
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	307, 688
AfaI	GTAC	3 cut(s)	505, 624, 748
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	5 cut(s)	298, 335, 365, 415, 734
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	6 cut(s)	112, 137, 395, 529, 607, 644
AluI	AGCT	6 cut(s)	112, 137, 395, 529, 607, 644
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	4 cut(s)	35, 48, 505, 518
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	1 cut(s)	648
ApeKI	GCWGC	3 cut(s)	134, 456, 644
ApoI	RAATTY	2 cut(s)	307, 688
Asp700I	GAANNNNTTC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	715
AsuC2I	CCSGG	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	715
BamHI	GGATCC	2 cut(s)	40, 510
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	146, 443, 631
BccI	CCATC	3 cut(s)	332, 376, 590
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	4 cut(s)	135, 457, 645, 648
BlsI	GCNGC	4 cut(s)	136, 458, 646, 649
Bme1390I	CCNGG	2 cut(s)	17, 423
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	2 cut(s)	42, 512
BmrFI	CCNGG	2 cut(s)	17, 423
BmsI	GCATC	3 cut(s)	133, 155, 643
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	105, 150
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	670
Bse8I	GATNNNNATC	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	105, 150
BseGI	GGATG	2 cut(s)	146, 148
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	18, 70
BseX3I	CGGCCG	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	146, 443, 631
Bsh1285I	CGRYCG	1 cut(s)	651
BshFI	GGCC	1 cut(s)	650
BsiEI	CGRYCG	1 cut(s)	651
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	16, 32, 115
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	650
BsoBI	CYCGRG	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	40, 510, 667
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	84, 647
BspANI	GGCC	1 cut(s)	650
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	42, 512
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	4 cut(s)	35, 48, 505, 518
BspT104I	TTCGAA	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	105, 150
BssMI	GATC	3 cut(s)	40, 510, 667
BssT1I	CCWWGG	2 cut(s)	105, 150
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	180, 224
Bst6I	CTCTTC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	303, 315, 518, 608
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	146, 148
BstKTI	GATC	3 cut(s)	43, 513, 670
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	40, 510, 667
BstMCI	CGRYCG	1 cut(s)	651
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 653
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	134, 491
BstSCI	CCNGG	2 cut(s)	15, 421
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	3 cut(s)	146, 443, 631
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	40, 510
BstYI	RGATCY	2 cut(s)	40, 510
BstZI	CGGCCG	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	650
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	146, 148
BtsIMutI	CAGTG	1 cut(s)	717
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	715
CseI	GACGC	2 cut(s)	107, 540
Csp6I	GTAC	3 cut(s)	504, 623, 747
CviAII	CATG	7 cut(s)	131, 151, 229, 284, 325, 404, 488
CviJI	RGCY	9 cut(s)	112, 118, 137, 395, 456, 529, 607, 644, 650
CviKI_1	RGCY	9 cut(s)	112, 118, 137, 395, 456, 529, 607, 644, 650
CviQI	GTAC	3 cut(s)	504, 623, 747
DdeI	CTNAG	4 cut(s)	303, 315, 518, 608
DpnI	GATC	3 cut(s)	42, 512, 669
DpnII	GATC	3 cut(s)	40, 510, 667
EaeI	YGGCCR	1 cut(s)	648
EagI	CGGCCG	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	648
Eco130I	CCWWGG	2 cut(s)	105, 150
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	715
Eco52I	CGGCCG	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	105, 150
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	105, 150
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	7 cut(s)	134, 154, 232, 287, 328, 407, 491
FatI	CATG	7 cut(s)	130, 150, 228, 283, 324, 403, 487
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	135, 457, 645, 648
FokI	GGATG	2 cut(s)	133, 155
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	135, 457, 645, 648
GluI	GCNGC	4 cut(s)	135, 457, 645, 648
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	3 cut(s)	16, 32, 115
HgaI	GACGC	2 cut(s)	107, 540
Hin1II	CATG	7 cut(s)	134, 154, 232, 287, 328, 407, 491
HincII	GTYRAC	2 cut(s)	51, 211
HindII	GTYRAC	2 cut(s)	51, 211
HinfI	GANTC	7 cut(s)	10, 35, 52, 301, 398, 418, 617
HpaI	GTTAAC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	16, 32, 115
Hpy166II	GTNNAC	3 cut(s)	51, 159, 211
Hpy188I	TCNGA	3 cut(s)	40, 306, 576
Hpy188III	TCNNGA	7 cut(s)	32, 44, 95, 284, 298, 335, 482
Hpy8I	GTNNAC	3 cut(s)	51, 159, 211
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	180, 224
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	6 cut(s)	134, 146, 349, 446, 459, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 653
HpyF3I	CTNAG	4 cut(s)	303, 315, 518, 608
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	134, 154, 232, 287, 328, 407, 491
Kpn2I	TCCGGA	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	40, 510, 667
LmnI	GCTCC	2 cut(s)	109, 117
LpnPI	CCDG	9 cut(s)	29, 45, 128, 408, 432, 435, 448, 555, 693
Lsp1109I	GCAGC	3 cut(s)	146, 443, 631
LweI	GCATC	3 cut(s)	133, 155, 643
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	42, 512, 669
MboI	GATC	3 cut(s)	40, 510, 667
MboII	GAAGA	5 cut(s)	303, 323, 427, 470, 602
MflI	RGATCY	2 cut(s)	40, 510
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	307, 688, 754
MlyI	GAGTC	3 cut(s)	46, 295, 427
MnlI	CCTC	6 cut(s)	39, 88, 91, 231, 260, 697
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	2 cut(s)	186, 210
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	3 cut(s)	16, 32, 115
MspR9I	CCNGG	2 cut(s)	17, 423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	143, 653
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	40, 510, 667
NlaIII	CATG	7 cut(s)	134, 154, 232, 287, 328, 407, 491
NlaIV	GGNNCC	2 cut(s)	42, 512
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	2 cut(s)	134, 491
NspV	TTCGAA	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	134
PagI	TCATGA	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	10, 35, 398, 617
PflMI	CCANNNNNTGG	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	136, 458, 646, 649
PleI	GAGTC	3 cut(s)	46, 295, 426
PpsI	GAGTC	3 cut(s)	46, 295, 426
Psp124BI	GAGCTC	1 cut(s)	114
Psp1406I	AACGTT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	42, 512
PspPI	GGNCC	1 cut(s)	715
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	40, 510
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	505, 624, 748
RsaNI	GTAC	3 cut(s)	504, 623, 747
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	186, 210
SatI	GCNGC	4 cut(s)	135, 457, 645, 648
Sau3AI	GATC	3 cut(s)	40, 510, 667
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	3 cut(s)	46, 295, 427
ScrFI	CCNGG	2 cut(s)	17, 423
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	3 cut(s)	133, 155, 643
SfcI	CTRYAG	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	536
SinI	GGWCC	1 cut(s)	715
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	3 cut(s)	307, 688, 754
SsiI	CCGC	2 cut(s)	84, 647
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	15, 421
StyI	CCWWGG	2 cut(s)	105, 150
TaaI	ACNGT	2 cut(s)	180, 224
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	96, 265, 481, 536
TasI	AATT	3 cut(s)	307, 688, 754
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	4 cut(s)	10, 35, 398, 617
Tru1I	TTAA	2 cut(s)	186, 210
Tru9I	TTAA	2 cut(s)	186, 210
TscAI	CASTG	1 cut(s)	717
TseI	GCWGC	3 cut(s)	134, 456, 644
TspDTI	ATGAA	5 cut(s)	267, 313, 387, 603, 630
TspRI	CASTG	1 cut(s)	717
Van91I	CCANNNNNTGG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	2 cut(s)	307, 688
XceI	RCATGY	2 cut(s)	134, 491
XmnI	GAANNNNTTC	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.