Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002473

Physical Location & Seq

Genomic Coordinates Reverse (-)

10540303 .. 10543427

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g07650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGAGAGAATCTCCGGGAGAATACTCAGCCTCCGGATTCGGATCCCGAGTTGACTCTCACCGTCTCCAATTCGCCGTCCTCCTCCGCCATTACTCTCGACGCTTCCAAGGAGCTCCGGCTTCGTTGTTCGCATGCAGCTTTGGATGCATCCATGGAGTGGACAAATGAGAAGCACGAACTGTATATTAACTCTTTAGAAACATCATTTGTTAACAAGTTATACCGTTCCATGCGTTTGAGGGAGTGGAATAAACAAAAGAACGTTAGAGGAACTCATTCATCACATGAGTTGCCATTCAAGATTCAGAATTCTTCCGAGCAGTTCATGGTTCTTCAAGATGGCGGTTTGCAGAAAATCAACCTTCAAAGGAATGAAACTTTGATGGAAAGCACAGCTGATTCTCATGTTACTTTGAAGAGTCCAGGCATAAGTCATTTTCTGCCTGCAGGAAAAGGCTGCAACGGGTCATCTCCTAATCTTCGAGAGCATGTCTTGTCTTCGAGTACGGGGATCCACTTAAGAGAGAGGCTGACTTCGAAAAACATCAATGCCTCATCAAGAGAAGTATCTGGTCAGAACTTTGTGGATGAAGACGATGGAGAGAAGCTAAGAAATGAATCTGTACCAAAAAGGCATAAAAGAGCTGCGGCTGATGCTTTCAGCAATGATCAACTTGTGCCTTCGGGAAATTTTGATACTAAAGAGGTTTCAGTGGTCCATAATGTTCCCTTTGAAGGAGTAGAGCGTACAACAAATTGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.45

Weight (kDa)

6.21

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33980 AT4G33980
fragaria_vesca	FvH4_2g05920 FvH4_2g05920 FvH4_2g05920
malus_domestica	MD05G1081700.v1.1
prunus_persica	Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1
pyrus_communis	pycom05g07650
rosa_chinensis	RchiOBHm_Chr6g0257491
rosa_laevigata	RLG00000014702
rosa_multiflora	Rmu_sc0004564.1_g000004 Rmu_sc0010794.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208810
rosa_rugosa	Rorug02G0320800 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh2CG357100 Rh2DG395200 Rh6AG089100 Rh6BG080900 Rh6CG077700 Rh6DG073300
rosa_wichuraiana	Rw2G030360 Rw6G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	3 cut(s)	87, 345, 650
AclI	AACGTT	1 cut(s)	264
AclWI	GGATC	4 cut(s)	38, 51, 508, 521
AcsI	RAATTY	2 cut(s)	310, 691
AfaI	GTAC	3 cut(s)	508, 627, 751
AfiI	CCNNNNNNNGG	2 cut(s)	159, 737
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	5 cut(s)	301, 338, 368, 418, 737
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	5 cut(s)	115, 140, 398, 610, 647
AluI	AGCT	5 cut(s)	115, 140, 398, 610, 647
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	4 cut(s)	38, 51, 508, 521
Ama87I	CYCGRG	1 cut(s)	47
Aor13HI	TCCGGA	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	137, 459, 647
ApoI	RAATTY	2 cut(s)	310, 691
Asp700I	GAANNNNTTC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	718
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	539
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	718
BamHI	GGATCC	2 cut(s)	43, 513
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	492, 600
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	149, 446, 634
BccI	CCATC	3 cut(s)	335, 379, 593
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	520
BisI	GCNGC	4 cut(s)	138, 460, 648, 651
BlsI	GCNGC	4 cut(s)	139, 461, 649, 652
Bme1390I	CCNGG	2 cut(s)	17, 426
Bme18I	GGWCC	1 cut(s)	718
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	2 cut(s)	45, 515
BmrFI	CCNGG	2 cut(s)	17, 426
BmsI	GCATC	3 cut(s)	136, 158, 646
BpiI	GAAGAC	2 cut(s)	492, 600
BplI	GAGNNNNNCTC	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	108, 153
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 737
Bse3DI	GCAATG	1 cut(s)	673
Bse8I	GATNNNNATC	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	108, 153
BseGI	GGATG	3 cut(s)	149, 151, 595
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	159, 737
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	149, 446, 634
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	16, 35, 118
BslI	CCNNNNNNNGG	2 cut(s)	159, 737
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	43, 513, 670
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	87, 345, 650
BspCNI	CTCAG	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	45, 515
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	4 cut(s)	38, 51, 508, 521
BspT104I	TTCGAA	1 cut(s)	539
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	108, 153
BssMI	GATC	3 cut(s)	43, 513, 670
BssT1I	CCWWGG	2 cut(s)	108, 153
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	64, 183, 227
Bst6I	CTCTTC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	135, 447
BstDEI	CTNAG	2 cut(s)	27, 611
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	149, 151, 595
BstKTI	GATC	3 cut(s)	46, 516, 673
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	43, 513, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 656
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	2 cut(s)	137, 494
BstSCI	CCNGG	2 cut(s)	15, 424
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	149, 446, 634
BstV2I	GAAGAC	2 cut(s)	492, 600
BstX2I	RGATCY	2 cut(s)	43, 513
BstYI	RGATCY	2 cut(s)	43, 513
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	149, 151, 595
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	135, 447
Cfr13I	GGNCC	1 cut(s)	718
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	507, 626, 750
CviAII	CATG	7 cut(s)	134, 154, 232, 287, 328, 407, 491
CviQI	GTAC	3 cut(s)	507, 626, 750
DdeI	CTNAG	2 cut(s)	27, 611
DpnI	GATC	3 cut(s)	45, 515, 672
DpnII	GATC	3 cut(s)	43, 513, 670
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	108, 153
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	718
Eco53kI	GAGCTC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	108, 153
EcoT22I	ATGCAT	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	108, 153
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	7 cut(s)	137, 157, 235, 290, 331, 410, 494
FatI	CATG	7 cut(s)	133, 153, 231, 286, 327, 406, 490
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	4 cut(s)	138, 460, 648, 651
FokI	GGATG	3 cut(s)	136, 158, 602
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	4 cut(s)	138, 460, 648, 651
GluI	GCNGC	4 cut(s)	138, 460, 648, 651
HapII	CCGG	3 cut(s)	16, 35, 118
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	7 cut(s)	137, 157, 235, 290, 331, 410, 494
HincII	GTYRAC	2 cut(s)	54, 214
HindII	GTYRAC	2 cut(s)	54, 214
HinfI	GANTC	7 cut(s)	10, 38, 55, 304, 401, 421, 620
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	3 cut(s)	16, 35, 118
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	54, 162, 214
Hpy188I	TCNGA	4 cut(s)	43, 309, 319, 579
Hpy188III	TCNNGA	8 cut(s)	35, 47, 98, 301, 338, 485, 561, 687
Hpy8I	GTNNAC	3 cut(s)	54, 162, 214
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	374, 693, 731
HpyCH4III	ACNGT	3 cut(s)	64, 183, 227
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	5 cut(s)	137, 149, 352, 449, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 656
HpyF3I	CTNAG	2 cut(s)	27, 611
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	7 cut(s)	137, 157, 235, 290, 331, 410, 494
Kpn2I	TCCGGA	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	670
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	43, 513, 670
LmnI	GCTCC	2 cut(s)	112, 120
LpnPI	CCDG	8 cut(s)	29, 48, 131, 411, 435, 438, 459, 558
Lsp1109I	GCAGC	3 cut(s)	149, 446, 634
LweI	GCATC	3 cut(s)	136, 158, 646
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	3 cut(s)	45, 515, 672
MboI	GATC	3 cut(s)	43, 513, 670
MboII	GAAGA	6 cut(s)	306, 326, 430, 473, 492, 605
MflI	RGATCY	2 cut(s)	43, 513
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	4 cut(s)	70, 310, 691, 757
MlyI	GAGTC	2 cut(s)	49, 430
MnlI	CCTC	8 cut(s)	42, 91, 94, 234, 263, 522, 565, 700
Mph1103I	ATGCAT	1 cut(s)	151
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	277
MseI	TTAA	3 cut(s)	189, 213, 521
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	3 cut(s)	16, 35, 118
MspR9I	CCNGG	2 cut(s)	17, 426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	146, 656
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	43, 513, 670
NlaIII	CATG	7 cut(s)	137, 157, 235, 290, 331, 410, 494
NlaIV	GGNNCC	2 cut(s)	45, 515
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	2 cut(s)	137, 494
NspV	TTCGAA	1 cut(s)	539
PaeI	GCATGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	277
PfeI	GAWTC	5 cut(s)	10, 38, 304, 401, 620
PflMI	CCANNNNNTGG	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	139, 461, 649, 652
PleI	GAGTC	2 cut(s)	49, 429
PpsI	GAGTC	2 cut(s)	49, 429
Psp124BI	GAGCTC	1 cut(s)	117
Psp1406I	AACGTT	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	45, 515
PspPI	GGNCC	1 cut(s)	718
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	43, 513
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	3 cut(s)	508, 627, 751
RsaNI	GTAC	3 cut(s)	507, 626, 750
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	189, 213, 521
SatI	GCNGC	4 cut(s)	138, 460, 648, 651
Sau3AI	GATC	3 cut(s)	43, 513, 670
Sau96I	GGNCC	1 cut(s)	718
SbfI	CCTGCAGG	1 cut(s)	451
SchI	GAGTC	2 cut(s)	49, 430
ScrFI	CCNGG	2 cut(s)	17, 426
SdaI	CCTGCAGG	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	8 cut(s)	117, 142, 267, 366, 400, 612, 649, 711
SfaNI	GCATC	3 cut(s)	136, 158, 646
SfcI	CTRYAG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	1 cut(s)	718
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SphI	GCATGC	1 cut(s)	137
Sse8387I	CCTGCAGG	1 cut(s)	451
Sse9I	AATT	4 cut(s)	70, 310, 691, 757
SsiI	CCGC	3 cut(s)	87, 345, 650
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	15, 424
StyI	CCWWGG	2 cut(s)	108, 153
TaaI	ACNGT	3 cut(s)	64, 183, 227
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	4 cut(s)	99, 484, 503, 539
TasI	AATT	4 cut(s)	70, 310, 691, 757
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	5 cut(s)	10, 38, 304, 401, 620
Tru1I	TTAA	3 cut(s)	189, 213, 521
Tru9I	TTAA	3 cut(s)	189, 213, 521
TscAI	CASTG	1 cut(s)	720
TseI	GCWGC	3 cut(s)	137, 459, 647
TspDTI	ATGAA	5 cut(s)	270, 316, 390, 606, 633
TspRI	CASTG	1 cut(s)	720
Van91I	CCANNNNNTGG	1 cut(s)	159
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	2 cut(s)	310, 691
XceI	RCATGY	2 cut(s)	137, 494
XmnI	GAANNNNTTC	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.