RchiOBHm_Chr6g0257491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002473
Physical Location & Seq
Reverse (-)
12864676 .. 12869250
4575 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23095

Sequence Viewer

Length: 912 bp
ATGGAAGAGCATATTCCTCCGCCGAATTCGGATCCCGAGTTCAGGAGCGAGTTGACTCGGACCGGCGGCTCCAACTCGGCGTCGTCCTCCTTCGTTGCTCTGCGGACTTGCGCGCATGCAACACCGGGCACAGCCACAGAGTGGACAAATGAGAAGCACAGATCGTATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGTACCATTCCAGGCATTTGCGGGACTGCCATCCACAAAAGTATGTTCAGGGGATACATCCATCAGAAGAGTTGCCTTTCAAGACTTATAATTCTTCTGACCAGGTCAGGGAGTCAAATCTGGTATATATCTATTTTCTTTGTGAGCATGTTGGTTTGTTGGTAATCTTATTTATTGCCCTTCTTCCTGTATTTCTTATCTTCTTGAATTGTTTGCAGTTCATTGTTGTTCGAGATAGGCGTTCTCAGAAGATCATCTCTCCAAGGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAACGTCACTATGGAAAGGCCCCAGATGGATCATATAGCGTCTTGTTTTAAGGGGACCCACCTAAGAAGGAAACCGACCTCAGAACACTCAAGTGTAATCGCAAGAACTTCAGAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGTTTCGGGTCAGAACTTTGTGGTTGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACCAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAACTTGTGCCATTGGGAAATTTTGATACAAAGGAGCTTTCAATGGCCCATATTGCTTCCTCCGGAAGAGAAGAACAAGGGCATCATCAGTTGCTATTAGAGGACCGTGAGTGCTTCATCTGTCCAAAATCTATCTGCACTGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.15

Weight (kDa)

6.56

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 824
AciI CCGC 5 cut(s) 20, 66, 103, 223, 492
AclWI GGATC 3 cut(s) 26, 39, 537
AcsI RAATTY 4 cut(s) 25, 172, 710, 781
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 3 cut(s) 42, 141, 310
AgsI TTSAA 3 cut(s) 283, 409, 804
AjnI CCWGG 2 cut(s) 212, 303
AleI CACNNNNGTG 1 cut(s) 591
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 2 cut(s) 700, 799
AluI AGCT 2 cut(s) 700, 799
AlwI GGATC 3 cut(s) 26, 39, 537
Ama87I CYCGRG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 824
AoxI GGCC 2 cut(s) 518, 807
ApeKI GCWGC 1 cut(s) 653
ApoI RAATTY 4 cut(s) 25, 172, 710, 781
AspLEI GCGC 2 cut(s) 113, 115
AspS9I GGNCC 5 cut(s) 60, 519, 555, 808, 865
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 732
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 3 cut(s) 60, 555, 865
BaeGI GKGCMC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 640
BccI CCATC 3 cut(s) 240, 271, 520
BciT130I CCWGG 2 cut(s) 214, 305
BciVI GTATCC 1 cut(s) 249
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 654
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 2 cut(s) 67, 654
BlsI GCNGC 2 cut(s) 68, 655
Bme1390I CCNGG 3 cut(s) 126, 214, 305
Bme18I GGWCC 3 cut(s) 60, 555, 865
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 5 cut(s) 60, 519, 555, 808, 865
BmiI GGNNCC 5 cut(s) 33, 70, 521, 556, 557
BmrFI CCNGG 3 cut(s) 126, 214, 305
BmsI GCATC 1 cut(s) 853
BpuEI CTTGAG 1 cut(s) 574
BpuMI CCSGG 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 464
BsaWI WCCGGW 1 cut(s) 824
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 141, 310
Bse118I RCCGGY 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 763
BseAI TCCGGA 1 cut(s) 824
BseBI CCWGG 2 cut(s) 214, 305
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 2 cut(s) 232, 259
BseLI CCNNNNNNNGG 3 cut(s) 42, 141, 310
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 2 cut(s) 461, 594
BsePI GCGCGC 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 640
BsgI GTGCAG 1 cut(s) 883
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 520, 809
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 63, 125, 825
BslFI GGGAC 2 cut(s) 239, 568
BslI CCNNNNNNNGG 3 cut(s) 42, 141, 310
BsmFI GGGAC 2 cut(s) 239, 568
BsnI GGCC 2 cut(s) 520, 809
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 824
Bsp143I GATC 5 cut(s) 31, 161, 453, 529, 760
BspACI CCGC 5 cut(s) 20, 66, 103, 223, 492
BspANI GGCC 2 cut(s) 520, 809
BspCNI CTCAG 2 cut(s) 460, 593
BspEI TCCGGA 1 cut(s) 824
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 5 cut(s) 33, 70, 521, 556, 557
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 3 cut(s) 26, 39, 537
BsrDI GCAATG 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 464
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 5 cut(s) 31, 161, 453, 529, 760
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 214, 305
Bst4CI ACNGT 2 cut(s) 707, 869
Bst6I CTCTTC 3 cut(s) 264, 754, 823
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 113, 117
BstDEI CTNAG 5 cut(s) 178, 447, 563, 580, 909
BstF5I GGATG 2 cut(s) 232, 259
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 115
BstKTI GATC 5 cut(s) 34, 164, 456, 532, 763
BstMBI GATC 5 cut(s) 31, 161, 453, 529, 760
BstMWI GCNNNNNNNGC 1 cut(s) 815
BstNI CCWGG 2 cut(s) 214, 305
BstNSI RCATGY 3 cut(s) 119, 353, 630
BstSCI CCNGG 3 cut(s) 124, 212, 303
BstSFI CTRYAG 1 cut(s) 654
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 640
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 520, 809
BtsCI GGATG 2 cut(s) 232, 259
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 2 cut(s) 655, 900
Cac8I GCNNGC 2 cut(s) 113, 117
CfoI GCGC 2 cut(s) 113, 115
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 5 cut(s) 60, 519, 555, 808, 865
CpoI CGGWCCG 1 cut(s) 60
CseI GACGC 2 cut(s) 69, 528
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 205
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 3 cut(s) 116, 350, 627
CviJI RGCY 8 cut(s) 69, 134, 520, 700, 727, 737, 799, 809
CviKI_1 RGCY 8 cut(s) 69, 134, 520, 700, 727, 737, 799, 809
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 5 cut(s) 178, 447, 563, 580, 909
DpnI GATC 5 cut(s) 33, 163, 455, 531, 762
DpnII GATC 5 cut(s) 31, 161, 453, 529, 760
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 3 cut(s) 264, 754, 823
EarI CTCTTC 3 cut(s) 264, 754, 823
EciI GGCGGA 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 464
Eco47I GGWCC 3 cut(s) 60, 555, 865
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 2 cut(s) 519, 555
EcoRI GAATTC 2 cut(s) 25, 710
EcoRII CCWGG 2 cut(s) 212, 303
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 3 cut(s) 119, 353, 630
FaqI GGGAC 2 cut(s) 239, 568
FatI CATG 3 cut(s) 115, 349, 626
FauI CCCGC 1 cut(s) 216
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 2 cut(s) 67, 654
FokI GGATG 2 cut(s) 219, 246
Fsp4HI GCNGC 2 cut(s) 67, 654
GlaI GCGC 2 cut(s) 112, 114
GluI GCNGC 2 cut(s) 67, 654
HaeIII GGCC 2 cut(s) 520, 809
HapII CCGG 3 cut(s) 63, 125, 825
HgaI GACGC 2 cut(s) 69, 528
HhaI GCGC 2 cut(s) 113, 115
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 119, 353, 630
Hin6I GCGC 2 cut(s) 111, 113
HinP1I GCGC 2 cut(s) 111, 113
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 5 cut(s) 55, 314, 497, 638, 905
HpaII CCGG 3 cut(s) 63, 125, 825
HphI GGTGA 1 cut(s) 732
Hpy166II GTNNAC 2 cut(s) 54, 144
Hpy188I TCNGA 8 cut(s) 31, 60, 268, 301, 450, 583, 613, 669
Hpy188III TCNNGA 7 cut(s) 35, 43, 283, 406, 434, 635, 825
Hpy8I GTNNAC 2 cut(s) 54, 144
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 100, 392, 561
HpyCH4III ACNGT 2 cut(s) 707, 869
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 5 cut(s) 119, 418, 626, 656, 900
HpyF10VI GCNNNNNNNGC 1 cut(s) 815
HpyF3I CTNAG 5 cut(s) 178, 447, 563, 580, 909
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 119, 353, 630
HspAI GCGC 2 cut(s) 111, 113
KflI GGGWCCC 1 cut(s) 555
Kpn2I TCCGGA 1 cut(s) 824
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 5 cut(s) 31, 161, 453, 529, 760
LmnI GCTCC 3 cut(s) 45, 74, 796
Lsp1109I GCAGC 1 cut(s) 640
LweI GCATC 1 cut(s) 853
MabI ACCWGGT 1 cut(s) 303
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 505
MalI GATC 5 cut(s) 33, 163, 455, 531, 762
MboI GATC 5 cut(s) 31, 161, 453, 529, 760
MboII GAAGA 9 cut(s) 17, 281, 288, 377, 394, 463, 741, 840, 845
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 7 cut(s) 25, 172, 200, 292, 409, 710, 781
MlyI GAGTC 2 cut(s) 49, 323
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 7 cut(s) 27, 97, 589, 676, 686, 832, 856
MroI TCCGGA 1 cut(s) 824
MseI TTAA 2 cut(s) 549, 729
MslI CAYNNNNRTG 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 3 cut(s) 63, 125, 825
MspR9I CCNGG 3 cut(s) 126, 214, 305
MvaI CCWGG 2 cut(s) 214, 305
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 815
NciI CCSGG 1 cut(s) 126
NdeII GATC 5 cut(s) 31, 161, 453, 529, 760
NlaIII CATG 3 cut(s) 119, 353, 630
NlaIV GGNNCC 5 cut(s) 33, 70, 521, 556, 557
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 3 cut(s) 119, 353, 630
OliI CACNNNNGTG 1 cut(s) 591
PaeI GCATGC 1 cut(s) 119
PauI GCGCGC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PfeI GAWTC 3 cut(s) 497, 638, 905
PflFI GACNNNGTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 68, 655
PleI GAGTC 2 cut(s) 49, 322
PpsI GAGTC 2 cut(s) 49, 322
PpuMI RGGWCCY 1 cut(s) 555
PsiI TTATAA 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 212, 303
PspGI CCWGG 2 cut(s) 212, 303
PspN4I GGNNCC 5 cut(s) 33, 70, 521, 556, 557
PspPI GGNCC 5 cut(s) 60, 519, 555, 808, 865
PspPPI RGGWCCY 1 cut(s) 555
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 31
PsyI GACNNNGTC 1 cut(s) 305
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 591
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SaqAI TTAA 2 cut(s) 549, 729
SatI GCNGC 2 cut(s) 67, 654
Sau3AI GATC 5 cut(s) 31, 161, 453, 529, 760
Sau96I GGNCC 5 cut(s) 60, 519, 555, 808, 865
SchI GAGTC 2 cut(s) 49, 323
ScrFI CCNGG 3 cut(s) 126, 214, 305
SduI GDGCHC 1 cut(s) 131
SetI ASST 6 cut(s) 309, 507, 564, 581, 702, 801
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 1 cut(s) 853
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 3 cut(s) 60, 555, 865
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SphI GCATGC 1 cut(s) 119
Sse9I AATT 7 cut(s) 25, 172, 200, 292, 409, 710, 781
SsiI CCGC 5 cut(s) 20, 66, 103, 223, 492
StyD4I CCNGG 3 cut(s) 124, 212, 303
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 707, 869
TaiI ACGT 1 cut(s) 507
TaqI TCGA 1 cut(s) 433
TasI AATT 7 cut(s) 25, 172, 200, 292, 409, 710, 781
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 3 cut(s) 497, 638, 905
Tru1I TTAA 2 cut(s) 549, 729
Tru9I TTAA 2 cut(s) 549, 729
TscAI CASTG 2 cut(s) 655, 907
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 4 cut(s) 412, 486, 703, 868
TspRI CASTG 2 cut(s) 655, 907
Tth111I GACNNNGTC 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 3 cut(s) 60, 555, 865
XapI RAATTY 4 cut(s) 25, 172, 710, 781
XceI RCATGY 3 cut(s) 119, 353, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.