Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002473

Physical Location & Seq

Genomic Coordinates Forward (+)

49665001 .. 49668372

Gene Structure 3372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATGGCGCTCGGTGATTTGCATGGCACATCCACAGAGTGGACAAATGAGAAGCACAGATCATATATAAATTCCTTAGAAACATCATTTGTAAATAAATTGTACCATTCCTGGCATTTGCAGGACTGCCATCCACAAAAGTATGTTCGGGGGACACATCCATCAGAAGAGTTGCCTTTCAAGACTTGTAATTCTTCTGACCAGTTCATTGTTCTTCAAGATAGGCGTTCTCAGAAGATCATCTCTCCTATGAATGAAACTCTGCTGGAAAGCACCGCTGATTCTAATGTTACTATGGAAAGGCCCCGGATGGATCATATAGTGTCTTGTTATAAGGGGACCCACCTAAGAAGGAAACCGACCTCAGAACACTCAGGTGTAATCGCAAGAACTTCAGAGCAGAACCCTGCATGTCATCAGGATTCAGTTGGCAGTGCTGCAGAAGTTTCGGGTCAGAACTTTGTGGATGAGGACAACAGAGGGAAGCTAAACTGTGAATTCATACCAAAAAGGCTTAAAAGGGCTTCACCCAACTCTTCCAGCAATGATCAACTTGTGCCATTGGGAAATTTTGATACAAAGGAGGTTTCAATGGCCCATAATGCTCCCTCCGGAAGAGAAGAACAAGGGCATCATCAGTTGCTATTAGAGCACCTGAGAGCTTCATCTGTCCAAGATCTATCTTCACTGATTCTTAGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.32

Weight (kDa)

6.38

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33980 AT4G33980
fragaria_vesca	FvH4_2g05920 FvH4_2g05920 FvH4_2g05920
malus_domestica	MD05G1081700.v1.1
prunus_persica	Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1 Prupe.8G126300_v2.0.a1
pyrus_communis	pycom05g07650
rosa_chinensis	RchiOBHm_Chr6g0257491
rosa_laevigata	RLG00000014702
rosa_multiflora	Rmu_sc0004564.1_g000004 Rmu_sc0010794.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208810
rosa_rugosa	Rorug02G0320800 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600 Rorug05G0571600
rosa_samantha	Rh2CG357100 Rh2DG395200 Rh6AG089100 Rh6BG080900 Rh6CG077700 Rh6DG073300
rosa_wichuraiana	Rw2G030360 Rw6G007810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	611
AciI	CCGC	2 cut(s)	276, 699
AclWI	GGATC	1 cut(s)	321
AcsI	RAATTY	3 cut(s)	70, 497, 568
AcuI	CTGAAG	1 cut(s)	378
AdeI	CACNNNGTG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	181, 218, 591
AjnI	CCWGG	1 cut(s)	110
AleI	CACNNNNGTG	1 cut(s)	375
AluBI	AGCT	2 cut(s)	487, 662
AluI	AGCT	2 cut(s)	487, 662
Alw21I	GWGCWC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	321
Aor13HI	TCCGGA	1 cut(s)	611
AoxI	GGCC	2 cut(s)	302, 594
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	3 cut(s)	70, 497, 568
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	303, 339, 595
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	26, 519
AvaII	GGWCC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	3 cut(s)	138, 169, 304
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	11
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	112, 307
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	3 cut(s)	303, 339, 595
BmiI	GGNNCC	3 cut(s)	305, 340, 341
BmrFI	CCNGG	2 cut(s)	112, 307
BmsI	GCATC	1 cut(s)	640
BpuMI	CCSGG	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	550
BseAI	TCCGGA	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	5 cut(s)	29, 130, 157, 315, 472
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	4 cut(s)	245, 378, 387, 647
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	2 cut(s)	304, 596
BsiHKAI	GWGCWC	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	307, 612
BslFI	GGGAC	2 cut(s)	166, 352
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	166, 352
BsnI	GGCC	2 cut(s)	304, 596
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp13I	TCCGGA	1 cut(s)	611
Bsp143I	GATC	5 cut(s)	59, 237, 313, 547, 676
BspACI	CCGC	2 cut(s)	276, 699
BspANI	GGCC	2 cut(s)	304, 596
BspCNI	CTCAG	4 cut(s)	244, 377, 386, 648
BspEI	TCCGGA	1 cut(s)	611
BspLI	GGNNCC	3 cut(s)	305, 340, 341
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	5 cut(s)	59, 237, 313, 547, 676
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	3 cut(s)	162, 541, 610
BstDEI	CTNAG	7 cut(s)	76, 231, 347, 364, 373, 656, 695
BstF5I	GGATG	5 cut(s)	29, 130, 157, 315, 472
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	5 cut(s)	62, 240, 316, 550, 679
BstMBI	GATC	5 cut(s)	59, 237, 313, 547, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 649
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	110, 305
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	304, 596
BtsCI	GGATG	5 cut(s)	29, 130, 157, 315, 472
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	439, 686
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	303, 339, 595
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	23, 411
CviJI	RGCY	6 cut(s)	304, 487, 514, 524, 596, 662
CviKI_1	RGCY	6 cut(s)	304, 487, 514, 524, 596, 662
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	7 cut(s)	76, 231, 347, 364, 373, 656, 695
DpnI	GATC	5 cut(s)	61, 239, 315, 549, 678
DpnII	GATC	5 cut(s)	59, 237, 313, 547, 676
DraIII	CACNNNGTG	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	162, 541, 610
EarI	CTCTTC	3 cut(s)	162, 541, 610
Eco47I	GGWCC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	378
EcoO109I	RGGNCCY	2 cut(s)	303, 339
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	26, 414
FaqI	GGGAC	2 cut(s)	166, 352
FatI	CATG	2 cut(s)	22, 410
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	5 cut(s)	16, 117, 144, 322, 479
Fsp4HI	GCNGC	1 cut(s)	438
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	304, 596
HapII	CCGG	2 cut(s)	307, 612
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	26, 414
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	281, 422, 691
HpaII	CCGG	2 cut(s)	307, 612
HphI	GGTGA	2 cut(s)	26, 519
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	6 cut(s)	166, 199, 234, 367, 397, 456
Hpy188III	TCNNGA	4 cut(s)	181, 218, 419, 612
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	4 cut(s)	22, 121, 410, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 649
HpyF3I	CTNAG	7 cut(s)	76, 231, 347, 364, 373, 656, 695
Hsp92II	CATG	2 cut(s)	26, 414
HspAI	GCGC	1 cut(s)	8
KflI	GGGWCCC	1 cut(s)	339
Kpn2I	TCCGGA	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	59, 237, 313, 547, 676
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	640
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	61, 239, 315, 549, 678
MboI	GATC	5 cut(s)	59, 237, 313, 547, 676
MboII	GAAGA	8 cut(s)	179, 186, 206, 247, 528, 627, 632, 675
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	5 cut(s)	70, 98, 190, 497, 568
MnlI	CCTC	5 cut(s)	373, 463, 473, 577, 619
MroI	TCCGGA	1 cut(s)	611
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	307, 612
MspR9I	CCNGG	2 cut(s)	112, 307
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	602, 649
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	5 cut(s)	59, 237, 313, 547, 676
NlaIII	CATG	2 cut(s)	26, 414
NlaIV	GGNNCC	3 cut(s)	305, 340, 341
NspI	RCATGY	1 cut(s)	414
OliI	CACNNNNGTG	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	281, 422, 691
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	439
PpuMI	RGGWCCY	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	3 cut(s)	305, 340, 341
PspPI	GGNCC	3 cut(s)	303, 339, 595
PspPPI	RGGWCCY	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	676
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	5 cut(s)	59, 237, 313, 547, 676
Sau96I	GGNCC	3 cut(s)	303, 339, 595
ScrFI	CCNGG	2 cut(s)	112, 307
SduI	GDGCHC	1 cut(s)	654
SetI	ASST	7 cut(s)	348, 365, 379, 489, 588, 657, 664
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	70, 98, 190, 497, 568
SsiI	CCGC	2 cut(s)	276, 699
StyD4I	CCNGG	2 cut(s)	110, 305
TaaI	ACNGT	1 cut(s)	494
TasI	AATT	5 cut(s)	70, 98, 190, 497, 568
TfiI	GAWTC	3 cut(s)	281, 422, 691
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	2 cut(s)	439, 693
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	5 cut(s)	196, 266, 270, 490, 654
TspRI	CASTG	2 cut(s)	439, 693
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	3 cut(s)	70, 497, 568
XceI	RCATGY	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.